FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7565, 209 aa
  1>>>pF1KB7565 209 - 209 aa - 209 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9890+/-0.000864; mu= 4.3807+/- 0.052
 mean_var=243.5392+/-48.521, 0's: 0 Z-trim(115.8): 46  B-trim: 117 in 1/52
 Lambda= 0.082184
 statistics sampled from 16352 (16393) to 16352 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.504), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS3816.1 HMGB2 gene_id:3148|Hs108|chr4           ( 209) 1431 181.3 3.7e-46
CCDS9335.1 HMGB1 gene_id:3146|Hs108|chr13          ( 215) 1182 151.8 2.9e-37
CCDS35428.1 HMGB3 gene_id:3149|Hs108|chrX          ( 200) 1016 132.1 2.3e-31
CCDS2477.1 SP100 gene_id:6672|Hs108|chr2           ( 879)  865 114.9 1.5e-25
CCDS30668.1 HMGB4 gene_id:127540|Hs108|chr1        ( 186)  540 75.6 2.2e-14


>>CCDS3816.1 HMGB2 gene_id:3148|Hs108|chr4                (209 aa)
 initn: 1431 init1: 1431 opt: 1431  Z-score: 942.2  bits: 181.3 E(32554): 3.7e-46
Smith-Waterman score: 1431; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
              130       140       150       160       170       180

              190       200         
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
       :::::::::::::::::::::::::::::
CCDS38 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
              190       200         

>>CCDS9335.1 HMGB1 gene_id:3146|Hs108|chr13               (215 aa)
 initn: 1182 init1: 1182 opt: 1182  Z-score: 782.5  bits: 151.8 E(32554): 2.9e-37
Smith-Waterman score: 1182; 81.3% identity (94.3% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
       ::::::.::::::::::::::::::::::::::.::::.::::::::::::::::::.::
CCDS93 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
       :::::.:::::.::::.:.::::. : : :::::::::::::::::::.:::::.:::::
CCDS93 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
       ::::.::::::::.. .: ::::::.::::::::::::::::::::: .:.:::  .   
CCDS93 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
              130       140       150       160       170       180

              190       200               
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE      
       ::::.: :..::.::.:.:.:.:::::::      
CCDS93 SKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE
              190       200       210     

>>CCDS35428.1 HMGB3 gene_id:3149|Hs108|chrX               (200 aa)
 initn: 1151 init1: 494 opt: 1016  Z-score: 676.5  bits: 132.1 E(32554): 2.3e-31
Smith-Waterman score: 1016; 74.3% identity (88.8% similar) in 206 aa overlap (1-206:1-200)

               10        20        30        40        50        60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
       :.::::.::.::::.:::::::::::::::.:.  ::::::::::::::::::.::::::
CCDS35 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
       ..:::.::.:::::::.: : :: ::  ::::::::::::.::::::: :::::: .::.
CCDS35 DEMAKADKVRYDREMKDYGPAKGGKK--KKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI
               70        80          90       100       110        

              130       140       150       160       170       180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
       ::::.::::::::.. . ..::::  ::::::::::::.: :..::: . : :::..   
CCDS35 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFD-GAKGPAKV--
      120       130       140       150       160        170       

              190       200         
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
       ..:: : ::::::::::.: ::::::   
CCDS35 ARKKVEEEDEEEEEEEEEE-EEEEDE   
         180       190        200   

>>CCDS2477.1 SP100 gene_id:6672|Hs108|chr2                (879 aa)
 initn: 1151 init1: 847 opt: 865  Z-score: 572.1  bits: 114.9 E(32554): 1.5e-25
Smith-Waterman score: 865; 66.7% identity (84.6% similar) in 201 aa overlap (8-208:683-879)

                                      10        20        30       
pF1KB7                        MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVN
                                     : :   :    .:. : ::::::.::.::.
CCDS24 KNWKLSIRCGGYTLKVLMENKFLPEPPSTRKKRILESHNNTLVDPC-EEHKKKNPDASVK
            660       670       680       690        700       710 

        40        50        60        70        80        90       
pF1KB7 FAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKR
       :.:: ::::: :::. ::::.:::::::.:::.:.::::.:.::::.:: : ::::::::
CCDS24 FSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGEKKKKFKDPNAPKR
             720       730       740       750       760       770 

       100       110       120       130       140       150       
pF1KB7 PPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEK
       :: ::::::::.:::::.::::::: :..:::. ::.. .: ::: ::.:::::::::.:
CCDS24 PPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFYEKKAAKLKEKYKK
             780       790       800       810       820       830 

       160       170       180       190       200         
pF1KB7 DIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDEE
       :::::::::: ...::   .   ::::.:   :::.::.:.:.:.:::.:. 
CCDS24 DIAAYRAKGKPNSAKKRVVKAEKSKKKKE---EEEDEEDEQEEENEEDDDK 
             840       850       860          870          

>>CCDS30668.1 HMGB4 gene_id:127540|Hs108|chr1             (186 aa)
 initn: 544 init1: 279 opt: 540  Z-score: 371.8  bits: 75.6 E(32554): 2.2e-14
Smith-Waterman score: 540; 45.5% identity (77.6% similar) in 165 aa overlap (1-165:1-163)

               10        20        30        40        50        60
pF1KB7 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF
       :::    ::....:::. :. . :.. :...:.. :.: :::.::::.:...: .::.:.
CCDS30 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL
       : .:: :::::..:: :::  .  :: .:.::. :.::::.:.:::..:  ..: :.:. 
CCDS30 EALAKLDKARYQEEMMNYVGKR--KKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNW
               70        80          90       100       110        

              130       140       150       160       170       180
pF1KB7 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG
       :. ..::  :.:::  .  .:.::::..: :. :: ...  :: .               
CCDS30 SVVQVAKATGKMWSTATDLEKHPYEQRVALLRAKYFEELELYRKQCNARKKYRMSARNRC
      120       130       140       150       160       170        

              190       200         
pF1KB7 SKKKNEPEDEEEEEEEEDEDEEEEDEDEE
                                    
CCDS30 RGKRVRQS                     
      180                           




209 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:44:49 2016 done: Fri Nov  4 08:44:49 2016
 Total Scan time:  2.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]