GENSCAN 1.0	Date run:  4-Nov-116	Time: 08:37:46

Sequence gi568815578f:49883060_50088053 : 204994 bp : 50.69% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    787   1007  221  2  2   89   49   607 0.914  54.92
 1.02 Intr +   3693   3839  147  2  0   69   59   322 0.846  27.83
 1.03 Term +   4680   4877  198  2  0  113   48   245 0.760  20.40
 1.04 PlyA +   8358   8363    6                               1.05

 2.03 PlyA -  12647  12642    6                               1.05
 2.02 Term -  23786  22560 1227  2  0  126   41  1451 0.999 135.82
 2.01 Init -  25431  25096  336  0  0   33  100   473 0.379  40.28
 2.00 Prom -  26913  26874   40                              -7.76

 3.00 Prom +  27214  27253   40                              -3.16
 3.01 Init +  28652  28793  142  1  1   68   77    52 0.510   2.40
 3.02 Term +  32427  32653  227  1  2   59   43   208 0.718  10.34
 3.03 PlyA +  33126  33131    6                               1.05

 4.00 Prom +  35581  35620   40                              -6.76
 4.01 Init +  37642  37715   74  0  2   63   68    70 0.282   1.05
 4.02 Intr +  45666  45756   91  0  1  117  117     9 0.771   6.70
 4.03 Intr +  53219  53476  258  1  0   69   49   214 0.014  13.26
 4.04 Intr +  58524  58652  129  2  0   84   48   128 0.501   9.29
 4.05 Intr +  62338  62429   92  0  2   63   94    85 0.528   5.39
 4.06 Intr +  63077  63191  115  2  1   92   89    56 0.998   6.55
 4.07 Intr +  66189  66296  108  2  0   46  103   125 0.994  10.28
 4.08 Intr +  69017  69052   36  1  0  100   41    87 0.011   3.66
 4.09 Intr +  73744  74178  435  0  0   74  -56   582 0.002  36.18
 4.10 Term +  74506  74973  468  0  0  -32   46   422 0.014  20.97
 4.11 PlyA +  75013  75018    6                               1.05

 5.00 Prom +  80592  80631   40                              -3.76
 5.01 Init +  87694  87828  135  0  0   84   93    53 0.477   5.68
 5.02 Intr +  98459  98541   83  1  2   94   77    62 0.878   4.14
 5.03 Intr +  99669  99827  159  0  0   57   46   151 0.924   6.90
 5.04 Intr + 100024 100082   59  1  2  102   96   127 0.740  13.43
 5.05 Intr + 100765 101292  528  2  0  137   92   512 0.910  49.41
 5.06 Term + 104813 104997  185  0  2  123   46   228 0.999  19.81
 5.07 PlyA + 105799 105804    6                               1.05

 6.00 Prom + 111757 111796   40                              -5.96
 6.01 Init + 115288 115346   59  0  2   50   61    57 0.134  -0.02
 6.02 Intr + 118922 119155  234  2  0   57   97    93 0.151   3.90
 6.03 Intr + 126916 127101  186  1  0   76   66    99 0.129   5.30
 6.04 Intr + 131195 131243   49  2  1   77   89    34 0.065   1.08
 6.05 Intr + 132524 132571   48  1  0   65   86    66 0.059   2.98
 6.06 Term + 140264 140335   72  1  0   92   50    32 0.202  -2.29
 6.07 PlyA + 143905 143910    6                               1.05

 7.12 PlyA - 146076 146071    6                               1.05
 7.11 Term - 146429 146274  156  2  0   90   41    54 0.374  -1.17
 7.10 Intr - 150715 150689   27  1  0   95   87    45 0.652   3.41
 7.09 Intr - 155668 155548  121  0  1   71   67    54 0.664   2.10
 7.08 Intr - 158436 158302  135  2  0   61   70    92 0.726   4.38
 7.07 Intr - 168999 168854  146  0  2   52   53    70 0.044  -1.02
 7.06 Intr - 170042 169990   53  0  2   97   59    59 0.191   2.53
 7.05 Intr - 170287 170137  151  1  1   39  -11   139 0.043  -1.16
 7.04 Intr - 171500 171298  203  0  2   52   80    70 0.010   1.60
 7.03 Intr - 179421 179262  160  0  1   80   77    70 0.272   4.66
 7.02 Intr - 201195 201070  126  0  0  101  103    78 0.952  11.48
 7.01 Intr - 202588 202505   84  1  0   78   46    56 0.505   0.42

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  69017  69082   66  1  0  100   53   167 0.955  12.34
S.002 Sngl +  74563  74973  411  0  0   74   46   362 0.976  26.89
S.003 Intr + 173516 173661  146  2  2  106   53   108 0.873   9.03


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:49883060_50088053|GENSCAN_predicted_peptide_1|188_aa
XLRGAIPYALSLHLDLEPMEKRQLIGTTTIVIVLFTILLLGGSTMPLIRLMDIEDAKAHR
RNKKDVNLSKTEKMGNTVESEHLSELTEEEYEAHYIRRQDLKGFVWLDAKYLNPFFTRRL
TQETPHTKHPVASPPFHGPAPDALTAWLCLSTQDLHHGRIQMKTLTNKWYEEVRQGPSGS
EDDEQELL

>gi568815578f:49883060_50088053|GENSCAN_predicted_CDS_1|567_bp
ngcctgcggggagccatcccctatgccctgagcctacacctggacctggagcccatggag
aagcggcagctcatcggcaccaccaccatcgtcatcgtgctcttcaccatcctgctgctg
ggcggcagcaccatgcccctcattcgcctcatggacatcgaggacgccaaggcacaccgc
aggaacaagaaggacgtcaacctcagcaagactgagaagatgggcaacactgtggagtcg
gagcacctgtcggagctcacggaggaggagtacgaggcccactacatcaggcggcaggac
cttaagggcttcgtgtggctggacgccaagtacctgaaccccttcttcactcggaggctg
acgcaggagacaccccacacaaaacacccagtagcatcccctcccttccatggccctgcc
cctgacgccctgacggcttggttgtgtctctcgacccaggacctgcaccacgggcgcatc
cagatgaaaactctcaccaacaagtggtacgaggaggtacgccagggcccctccggctcc
gaggacgacgagcaggagctgctctga

>gi568815578f:49883060_50088053|GENSCAN_predicted_peptide_2|520_aa
MGKPSSMDTKFKDDLFRKYVQFHESKVDTTTSRQRPGSDECLRVAASTLLSLHKVDPFYR
FRLIQFYEVVESSLRSLSSSSLRALHGAFSMLETVGINLFLYPWKKEFRSIKTYTGPFVY
YVKSTLLEEDIRAILSCMGYTPELGTAYKLRELVETLQVKMVSFELFLAKVECEQMLEIH
SQVKDKGYSELDIVSERKSSAEDVRGCSDALRRRAEGREHLTASMSRVALQKSASERAAK
DYYKPRVTKPSRSVDAYDSYWESRKPPLKASLSLRKEPVATDVGDDLKDEIIRPSPSLLT
MASSPHGSPDVLPPASPSNGPALLRGTYFSTQDDVDLYTDSEPRATYRRQDALRPDVWLL
RNDAHSLYHKRSPPAKESALSKCQSCGLSCSSSLCQRCDSLLTCPPASKPSAFPSKASTH
DSLAHGASLREKYPGQTQGLDRLPHLHSKSKPSTTPTSRCGFCNRPGATNTCTQCSKVSC
DACLSAYHYDPCYKKSELHKFMPNNQLNYKSTQLSHLVYR

>gi568815578f:49883060_50088053|GENSCAN_predicted_CDS_2|1563_bp
atggggaagcccagttcaatggatactaaattcaaggatgacttatttcggaagtacgtg
cagttccatgagagcaaagtggataccaccaccagcaggcagcggcctggcagcgatgag
tgcctgcgggtggcagcctcaaccctgctcagcctgcacaaggtggatcccttttatcga
ttccggctgatccagttctatgaggtggtggagagctccttgcgctcgctcagctcctct
agcctgcgggctctgcacggcgccttcagcatgctggagacggtgggcatcaacctcttc
ctctacccgtggaagaaggaattcagaagcatcaagacctacacgggcccttttgtttat
tatgtcaagtcgacattactggaagaggacatccgagccatcctgagctgcatgggctac
acacctgagctgggcactgcatacaagctcagagagctcgtggagaccctccaggtgaag
atggtctcctttgagctctttctggccaaagtcgagtgtgagcagatgctagaaatccac
tcacaagtgaaggacaagggctactccgagctggacattgtgagcgagcgcaagagcagt
gcagaggatgtgcgcggctgctcggacgccctgcggcggcgggcagagggccgggagcac
ctgacggcctccatgtcacgagtggcactccagaagtcggccagcgagcgggcggccaag
gactactacaagccccgcgtgaccaagccctcgaggtcagtggatgcctatgacagctac
tgggagagccggaagccacccctgaaggcctcattgagtcttcggaaggagcctgtggca
acggatgtgggggacgacctcaaggatgagatcatccgcccatccccttcgctgctgacc
atggccagctccccccacggcagcccggatgtgcttccacccgcctcccccagcaacggc
ccggccctgctgcgcggtacctacttctccactcaggatgacgtggatctgtacacagac
tctgaacccagggccacctaccgtcggcaggatgctctgcggccggatgtgtggctgctc
agaaacgatgcccactccctctaccacaagcgctcgccccctgccaaagagtccgccctc
tccaagtgccaaagctgcgggctgtcctgcagctcctccctctgccagcgctgtgacagc
ctgctcacctgtcctccagcttccaagcccagcgccttccccagcaaggcctcgactcat
gacagcctggcccacggggcatctctgcgggagaagtacccaggccagactcagggcctc
gaccgcctcccgcaccttcactccaaatccaagccctccaccacgcccacttcccgctgt
ggcttctgcaaccgcccaggcgccaccaacacctgcacccagtgttcaaaagtctcatgt
gacgcctgcctcagcgcttaccattatgacccctgctacaaaaagagtgagctgcacaag
ttcatgcccaacaaccagctgaactacaagtccacccagctctcccatctcgtgtacaga
tag

>gi568815578f:49883060_50088053|GENSCAN_predicted_peptide_3|122_aa
MDAAKDVCIHDAITLVSHWYLPRILGDQLESKETGSERWHEVRQVAQGVLRPVPGGQQRP
GNTRPGNDVTMRRARREGGPRLRAGSGKRSMPAADGDYNPEAEDKAEGRRARTKPAEPHF
GA

>gi568815578f:49883060_50088053|GENSCAN_predicted_CDS_3|369_bp
atggatgctgcaaaggatgtctgcattcacgatgccatcactttagtttctcattggtac
ctcccaagaatcctgggagatcagctggagagcaaagaaacgggctcagaaagatggcat
gaggtacgacaagtagctcaaggggtactgagaccagtacccgggggccagcagcgaccc
ggaaacactcggcccggaaatgatgtcaccatgaggcgggcccgaagagagggtggacca
cggctgcgcgctggctccgggaagcggtcgatgcccgcggccgacggagactacaaccca
gaggcggaggacaaagcggaaggccgaagagcgaggacgaaaccggcggaaccgcacttt
ggagcctaa

>gi568815578f:49883060_50088053|GENSCAN_predicted_peptide_4|601_aa
MVITGVWLRLCLALGARSAPCTKDGQCTVSHDGQRQEILRELERIKEPVFSSQGPLACVR
GAPRGGPPASPAPNRSPPREPRPLGLLLIGRRCAAQSGSKMAAQQRDCGGAAQLAGPAAE
ADPLGRFTCPVCLEVYEKPVQECLKPKKPVCGVCRSALAPGVRAVELERQIESTETSCHG
CRKNIRSHVATCSKYQNYIMEGVKATIKDASLQPRNVPNRYTFPCPYCPEKNFDQEGLVE
HCKLFHSTDTKSVVCPICASMPWGDPNYRSANFREHIQRRHRFSYDTFVDYDVDEEDMMN
QAPSYGARPVSSMVSVYAGARGSGSRISESHSTSFWGGMGSGDLAGGMAGDLAGMGGIQN
EKETMQSLNDHLASYLDRMRSLETKNWKPESKIREHLEKKGPQVRDWSHHFKTIEDLRAQ
IFTNTVDNACIVLQINNACLAADDFTIEENTTEVTTQSTEVGTAEMTHRTETCSPVLGDR
PGLHEKSEGQLGEQPEGGGGPLFPADGTAQWDTAVPGVRAGTDPGRGTVPGPGVGSPAEH
KVKLEAEITTYCRLLEDSEDFNLGDALDSRNSMQTIQKTTTRQTVDGKVVSETNDTKVLR
H

>gi568815578f:49883060_50088053|GENSCAN_predicted_CDS_4|1806_bp
atggttatcacaggagtgtggctgaggctgtgtttggccctgggtgccaggtctgcaccc
tgcactaaggatgggcaatgtacagtaagccatgatgggcagaggcaggaaatacttaga
gaactggaaagaataaaggagccggtgttctcttcgcagggcccgctcgcttgcgtcaga
ggggccccgaggggcggcccacccgctagccccgcccccaaccgctcaccgccccgcgag
ccccgccccctcggcctcctcctcatcggccgccgttgcgcggcgcagagcggcagcaag
atggcggcgcaacagcgggactgcgggggtgctgcgcagctggcggggccggcggcggag
gctgaccccctaggacgcttcacgtgtcccgtgtgcttagaggtgtacgagaagccggta
caggaatgtctgaagccgaagaagcctgtctgtggggtgtgtcgcagcgctctggcacct
ggcgtccgagccgtggagctcgagcggcagatcgagagcacagagacttcttgccatggc
tgccgtaagaatatccggtcccacgtggctacttgttccaaataccagaattacatcatg
gaaggtgtgaaggccaccattaaggatgcatctcttcagccaaggaatgttccaaaccgt
tacacctttccttgtccttactgtcctgagaagaactttgatcaggaaggacttgtggaa
cactgcaaattattccatagcacggataccaaatctgtggtttgtccgatatgtgcctcg
atgccctggggagaccccaactaccgcagcgccaacttcagagagcacatccagcgccgg
caccggttttcttatgacacttttgtggattatgatgttgatgaagaggacatgatgaat
caggcgcccagctatggcgcccggccggtcagcagtatggttagcgtctatgcaggtgcc
cggggctctggttcccggatctccgagtcccactccaccagcttctggggcggcatgggg
tccggggacctggccggggggatggctggggatctggcaggaatgggaggcatccagaac
gagaaggagaccatgcaaagcctgaacgaccatctggcctcctacctggacagaatgagg
agcctggagaccaagaactggaagccggagagcaaaatccgggagcacctggagaagaag
ggaccccaggtcagagactggagccatcacttcaaaaccatcgaggacctgagggctcag
atcttcacaaatactgtggacaatgcctgcattgttctgcagatcaacaatgcctgtctt
gctgctgatgactttacaattgaggagaacactacagaagtcaccacgcagtccaccgag
gttggaactgctgagatgactcacagaactgagacatgcagtccagtccttggagatcga
cctggactccatgagaaatctgaaggccagcttggagaacagcctgagggaggtggaggc
ccgctatttcctgcagatggaacagctcagtgggatactgctgtacctggagtcagagct
ggcacagacccaggcagagggacagtgccaggcccaggagtaggaagccctgctgaacat
aaggtcaagctggaggctgagatcaccacctactgccgcctgctggaagacagcgaggac
ttcaatcttggtgatgccctggacagccgcaactccatgcaaaccatccaaaagaccacc
acccgccagacagtggatggcaaagtggtgtctgagaccaacgacaccaaagttctgaga
cattaa

>gi568815578f:49883060_50088053|GENSCAN_predicted_peptide_5|382_aa
MERAGLYQCSLMGKGPRPETVCEQVCVYEPLSPPTLQVPGDSLGKLEPGEDDFVHGCHTR
HQVTKQTVVLPFSPSTGDDPRCASEPRLGGVPARALTATRREPGQQPAHLLGEWPSAETS
LRLARRKPSDPNRKPNYSELQDSNPEFTFQQPYDQAHLLAAIPPPEILNPTASLPMLIWD
SVLAPQAQPIAWASLRLQESPRVAELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSVSSLE
AEAYAAFPGLGQVPKQLAQLSEAKDLQARKAFNCKYCNKEYLSLGALKMHIRSHTLPCVC
GTCGKAFSRPWLLQGHVRTHTGEKPFSCPHCSRAFADRSNLRAHLQTHSDVKKYQCQACA
RTFSRMSLLHKHQESGCSGCPR

>gi568815578f:49883060_50088053|GENSCAN_predicted_CDS_5|1149_bp
atggagagagcagggctctatcagtgcagtctgatgggtaaggggcctaggcccgagaca
gtctgcgagcaagtgtgcgtgtatgagcccctgagcccgcccaccctgcaagtgcctgga
gactcactggggaagctagaaccaggggaggacgattttgttcacggctgtcacacccgg
caccaagtgactaaacagacagtagttctgcccttcagccccagcaccggggacgacccg
cgctgcgccagcgaaccccgcctcggaggagtccccgcccgggctctcaccgccacgcgg
cgcgagcccggccagcagccggcgcacctgctcggggagtggccttcggcggagacgagc
ctccgattggcgcggaggaagccctccgaccccaatcggaagcctaactacagcgagctg
caggactctaatccagagtttaccttccagcagccctacgaccaggcccacctgctggca
gccatcccacctccggagatcctcaaccccaccgcctcgctgccaatgctcatctgggac
tctgtcctggcgccccaagcccagccaattgcctgggcctcccttcggctccaggagagt
cccagggtggcagagctgacctccctgtcagatgaggacagtgggaaaggctcccagccc
cccagcccaccctcaccggctccttcgtccttctcctctacttcagtctcttccttggag
gccgaggcctatgctgccttcccaggcttgggccaagtgcccaagcagctggcccagctc
tctgaggccaaggatctccaggctcgaaaggccttcaactgcaaatactgcaacaaggaa
tacctcagcctgggtgccctcaagatgcacatccgaagccacacgctgccctgcgtctgc
ggaacctgcgggaaggccttctctaggccctggctgctacaaggccatgtccggacccac
actggcgagaagcccttctcctgtccccactgcagccgtgccttcgctgaccgctccaac
ctgcgggcccacctccagacccactcagatgtcaagaagtaccagtgccaggcgtgtgct
cggaccttctcccgaatgtccctgctccacaagcaccaagagtccggctgctcaggatgt
ccccgctga

>gi568815578f:49883060_50088053|GENSCAN_predicted_peptide_6|215_aa
MNEQTEGGDKDDAGTGFFANIYGQLILQLWGADIHQDHEYSPRPRIFTKTTNLHLAGAHC
CDSIIPGNELHGVTAPSRESGTELRKDKGLVQECTAIRPRPRRDECSTRPPLWGPQTARR
QANPAWKIRRWKARRLIEGAGSGGGGGEGAAGAVRPGPETPSSQIPEFSSRALEVVGRTL
TPETLVDVNSNRPSPVGESPYGSPTTGGWCSQDAG

>gi568815578f:49883060_50088053|GENSCAN_predicted_CDS_6|648_bp
atgaatgagcagactgagggaggagacaaggatgatgccgggacaggatttttcgccaat
atctatggacagctcattcttcaactctggggggccgatattcaccaagaccacgaatat
tcacccagaccacgaatcttcaccaagaccacaaatcttcaccttgcaggtgctcactgc
tgtgactcaatcattccagggaatgagctgcatggggtgacagccccttcgagagagtca
gggactgagctcagaaaagacaaaggacttgtccaagaatgcacagccattaggccgcgg
ccccggcgagacgaatgcagcacacggccgcctttatggggcccgcagacagcgcgtcgc
caggctaaccctgcgtggaaaattcggaggtggaaggcgaggcgccttattgagggggcc
ggcagcggcggcggcggcggcgagggggcggcgggggctgtgcggcccgggccggaaact
ccaagttcacagatccctgaattctcttcgagggccctggaggtggtgggtaggacccta
actccagaaaccctggtagatgtcaacagcaacaggccctcacctgttggggaaagtccc
tatgggtcacccacaactggaggctggtgtagccaggatgcaggctag

>gi568815578f:49883060_50088053|GENSCAN_predicted_peptide_7|453_aa
TTRCRCLHGSNYAVQDSFPEERARMPERTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN
MNGVNSSNGVESDQECGLSHQKDWRWNSGPASHRLCAPGKCPDITDHLPRGVHGLPHAAV
GRFGTRIKMVKNGDSGLGELCLCSAEQEGMVLRGTHRATGSPTLSCCRVSWDKATTQRPP
SQDPAQFGDRQSPMNLLARLEPAAIWSDGLFMEPGGGGPGPDPANLEVISSRGWGAFGVL
IRHSSSDLLQGQERRTPAEITHIIRFSEKCEPYCRLHIREICTTHNPPHNPQPLSDCLPR
NRSLVLKRDGEDEQGFYTRRQKGTSAKENENTRPGEAAGMRAVVVLRGEAVSQCTFILAW
GGGSSKWDLFSTDTIDRGLSTHPCQLGNFGAGKGLSVATVLAGLHTGCSLCLELSLRRHP
HGFLRFVLQISLASLSETPYSTPSNRESPRAMS

>gi568815578f:49883060_50088053|GENSCAN_predicted_CDS_7|1362_bp
accactagatgccgctgtttacacgggagcaattatgcagtacaagactcctttcctgag
gagagggcacggatgccggagaggacaatttatgaaaaccgaatatacagccttaaaata
gaatgtggacctaaatacccagaagcacccccctttgtaagatttgtaacaaaaattaat
atgaatggagtaaatagttctaatggagtggaaagtgaccaagaatgtggactgagccac
cagaaggactggcgctggaattctggccctgcctctcaccggctgtgtgccccgggcaag
tgtccagacatcactgatcatctgcctcggggggtgcatggcttgcctcatgcagctgta
ggaagatttggaacgaggataaagatggtgaaaaatggggactcaggcctcggggagctg
tgtctctgctcagcggagcaggaagggatggtcctgaggggaactcacagagcaactggc
tcccccaccttgtcctgctgccgggtgtcctgggacaaggctaccacccagcggccaccc
agccaggatccagcccagtttggagacaggcagtcccccatgaacctgctcgccaggctg
gagccagccgccatctggagcgacgggctgtttatggagccaggcggcggcggccctggc
cctgacccggccaatctggaagtgattagcagccggggctggggagcatttggagttctc
atcaggcattccagctcggacctgctccaaggccaggagcgcagaacaccagcagagatc
acccacatcattagattctcagagaagtgcgaaccctattgcagattgcatatacgagag
atatgcacaacacacaaccccccacacaacccccagcccctttcagattgtcttccacga
aaccggtccctggtgctaaaaagagacggagaagatgaacagggattttataccaggcgt
cagaagggaaccagtgctaaagaaaatgaaaacaccaggccgggagaggcagctggcatg
cgggccgtggtggttttacgtggtgaggcggtatctcagtgcacgtttattctggcctgg
ggaggaggcagcagcaaatgggacttgttcagcacagacaccattgacaggggcctctcc
actcatccctgccagctggggaacttcggggctgggaagggcctttctgtggccacggtc
ctggctggccttcacactggctgttccctctgcctggaactctctctccgcagacaccca
catggcttccttcgattcgtcctgcagatctccctggcatcactttctgagacaccgtac
tcaaccccctccaacagggaaagcccccgcgctatgtcctga