GENSCAN 1.0	Date run:  4-Nov-116	Time: 08:33:04

Sequence gi568815595r:129070456_129271757 : 201302 bp : 46.96% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +    522    545   24  1  0  138   94     1 0.535   3.70
 1.02 Term +   1910   2025  116  0  2   29   38   118 0.648  -0.37
 1.03 PlyA +   3759   3764    6                               1.05

 2.18 PlyA -   4259   4254    6                               1.05
 2.17 Term -   6984   6932   53  1  2   95   47    85 0.022   2.69
 2.16 Intr -  14908  14848   61  1  1   92   52    70 0.041   2.11
 2.15 Intr -  20566  20377  190  0  1  -20   58   137 0.168  -0.51
 2.14 Intr -  20891  20648  244  0  1  125   20   405 0.684  33.96
 2.13 Intr -  24714  24531  184  0  1   54  109   415 0.838  39.56
 2.12 Intr -  31253  31201   53  0  2   89  115     9 0.829   2.33
 2.11 Intr -  36560  36322  239  1  2   83   59   125 0.303   6.36
 2.10 Intr -  38064  38048   17  0  2   64  115     8 0.097  -4.56
 2.09 Intr -  46483  46337  147  1  0  122   60    10 0.341   2.03
 2.08 Intr -  51037  50831  207  1  0   70   81   383 0.596  35.07
 2.07 Intr -  60181  60095   87  1  0   90   75   100 0.995   9.07
 2.06 Intr -  63740  63619  122  0  2   74   57   187 0.999  14.41
 2.05 Intr -  64483  64377  107  0  2   95   61   151 0.556  12.96
 2.04 Intr -  70030  69909  122  1  2   45   97   118 0.539   7.69
 2.03 Intr -  75418  75306  113  2  2   97   64   129 0.947  11.50
 2.02 Intr -  88721  88699   23  1  2  145  103    -1 0.385   4.29
 2.01 Init -  89344  89304   41  1  2   89  115    -9 0.605   1.56
 2.00 Prom -  89787  89748   40                             -10.05

 3.00 Prom +  90121  90160   40                              -7.86
 3.01 Sngl +  90519  91166  648  2  0   97   48   379 0.995  28.98
 3.02 PlyA +  91459  91464    6                               1.05

 4.05 PlyA -  93171  93166    6                               1.05
 4.04 Term - 100115  99998  118  1  1  103   32   154 0.999   9.31
 4.03 Intr - 100822 100624  199  2  1   30   82   209 0.996  12.91
 4.02 Intr - 101053 100991   63  2  0   89  115    17 0.518   3.19
 4.01 Init - 101302 101179  124  1  1   97   53   110 0.941   8.73
 4.00 Prom - 111439 111400   40                              -3.16

 5.02 PlyA - 112671 112666    6                               1.05
 5.01 Sngl - 113228 113037  192  2  0   97   49   210 0.150  11.13
 5.00 Prom - 120104 120065   40                              -4.16

 6.00 Prom + 131448 131487   40                              -2.06
 6.01 Init + 132679 132719   41  0  2   76  101    34 0.290   3.32
 6.02 Intr + 159138 159165   28  0  1   65   77    40 0.006  -1.28
 6.03 Intr + 159258 159309   52  2  1   81  107    21 0.233   1.78
 6.04 Term + 162900 163081  182  1  2   37   50   146 0.355   3.47
 6.05 PlyA + 164603 164608    6                               1.05

 7.00 Prom + 169084 169123   40                              -2.06
 7.01 Init + 179826 179915   90  2  0  103  -10   109 0.356   3.09
 7.02 Intr + 181826 181906   81  1  0   56   92    56 0.860   2.63
 7.03 Intr + 182168 182239   72  1  0   58   95   104 0.724   7.70
 7.04 Intr + 182421 182515   95  2  2   64   12   106 0.851  -0.64
 7.05 Intr + 184213 184288   76  1  1  104   76   112 0.948  11.12
 7.06 Intr + 184530 184622   93  2  0  116   62   155 0.953  15.86
 7.07 Intr + 185613 185699   87  2  0  108   94   114 0.998  14.17
 7.08 Intr + 187015 187172  158  0  2   81   97   196 0.999  18.61
 7.09 Intr + 187272 187405  134  0  2   78   43   229 0.988  17.69
 7.10 Intr + 189878 189945   68  0  2   88  116    52 0.999   6.62
 7.11 Intr + 190164 190352  189  2  0  105   77   349 0.999  35.28
 7.12 Intr + 193449 193544   96  2  0   84   94   143 0.996  14.71
 7.13 Intr + 195094 195337  244  0  1   75   96   446 0.999  41.17
 7.14 Intr + 196569 196644   76  1  1   61  105    58 0.998   3.37
 7.15 Intr + 197482 197585  104  1  2   89  101   178 0.997  19.02
 7.16 Intr + 198040 198165  126  2  0   88   92   168 0.999  17.85
 7.17 Intr + 198477 198545   69  1  0   93   96    53 0.976   5.75

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:129070456_129271757|GENSCAN_predicted_peptide_1|46_aa
XGETEAQKAFKAILGHMLDKLALDRRKREDRYNGGKIENPCGFPML

>gi568815595r:129070456_129271757|GENSCAN_predicted_CDS_1|141_bp
natggggaaactgaggcacagaaagcattcaaagccatcctggggcacatgttggacaag
cttgccctagaccgaaggaaaagagaagaccgatacaacggtggcaaaatagaaaatccc
tgtggatttcccatgttataa

>gi568815595r:129070456_129271757|GENSCAN_predicted_peptide_2|669_aa
MGKLSDRETTSHRWPEMQKRPSGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGK
VGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKERKKTRAELMKAIDFEYYGYLDE
DDGVIVPLEQEYEKKLRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAVTEEESDEE
GSQEKGGDDSQQKFIAHVPVPSQQEAMAGPGPGPGDPDEQYDFLFKLVLVGDASVGKTCV
VQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKCPQEISAGSKSLKHSEAPLLTLIWDN
TKACYVNSFLQITRHTGLKSSAEVPERERPAKRRGLLCFLGDWGGNLNCEKLTGPSLITC
WWSTGTGTHILDFSSLCIATKPPKESCIVTRDKESHFSCWAFRHSFLRVSFFTAIWPHCP
FHVSNTLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS
NIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM
RHGGPLFSEKSPDHIQLNSKDIGEGWGCGASPPGYRQLQQPGEALELCILWPGCGMEALL
EEGEAGYPGGPPCQPAAGPPPSSHSKTGLNPPRATVRPTASNPVYSSGYGGRDCWSSTQV
FDLPTFIIM

>gi568815595r:129070456_129271757|GENSCAN_predicted_CDS_2|2010_bp
atggggaaactgagtgatagagagactacttctcacagatggcccgaaatgcagaaaagg
ccatctggtttaggtgaatttcgaattcgtgacctgaatgatgaaattaacaagctgcta
agggagaaaggacactgggaggtccggataaaggagctgggaggtcctgattatggaaaa
gttggccctaaaatgctggatcatgaaggaaaagaagtcccaggaaaccgaggttacaag
tactttggagcagcaaaagatttgcctggtgttagagagctgtttgaaaaagaacgtaaa
aagacacgtgctgagctcatgaaggcaatcgattttgagtactatggttacctagatgaa
gatgatggtgttattgtgcctttggaacaggaatatgaaaagaaactcagagccgagtta
gtggaaaagtggaaagcagagagagaggctcggctggcaagaggagaaaaggaagaggag
gaggaagaggaggaagagatcaacatctatgcagtcaccgaggaggagtcggacgaggaa
ggcagccaggagaaaggaggggacgacagccagcagaagttcattgctcacgtccctgtt
ccctcgcagcaagaggccatggcagggccgggcccaggcccgggggacccggacgagcag
tacgatttcctgttcaagctggtgctggtgggcgacgcaagcgtgggcaagacgtgcgtg
gtgcagcgcttcaagaccggcgccttctcggagcgccagggaagcaccatcggcgtcgac
ttcaccatgaagacgctggagatccagggcaagcgggtcaagtgtcctcaggaaatctca
gctggctctaaatccttaaaacattctgaagctcctctactcactcttatctgggacaac
acaaaggcctgttatgtaaactcgtttttgcagatcactaggcacaccggcctcaagtcc
agcgcagaggtaccagagagagaaaggcctgcaaaacgtcgtgggttactgtgcttcctg
ggtgactggggaggaaacttgaactgcgagaagctgacagggccatccctcatcacgtgc
tggtggagtacaggaacaggaacgcacatcctggatttttcttcactctgcatcgccacc
aagcctcccaaggagagctgcattgtaacaagggacaaagaaagccatttctcatgctgg
gccttcaggcactcatttttaagagtttccttcttcacggccatctggccacactgccct
ttccatgtctctaacacgctgcagatctgggacacggccggccaggagcggttccgcacc
atcacccagagctactaccgcagtgccaatggggccatccttgcctacgacatcaccaag
aggagctccttcctgtcggtgcctcactggattgaggatgtgaggaagtatgcgggctcc
aacattgtgcagctgctgatcgggaacaagtcagacctcagcgagcttcgggaggtctcc
ttggctgaggcacagagcctggctgagcactatgacatcctgtgtgccattgagacgtct
gccaaggactcgagcaacgtggaggaggccttcctgagggtggccacggagctcatcatg
cggcacgggggccccttgttcagcgagaagagccccgaccacatccagctgaacagcaag
gacatcggagaaggctggggctgcggagccagccctcctgggtaccggcaactacagcag
ccgggtgaagctctggagctctgcatcctgtggcctggctgcgggatggaggctctcctt
gaggaaggggaagcaggataccctggcgggccaccctgccagccagcagctggccctcca
ccatcttcacattccaagactggcctgaacccgccgcgggccacggtgcggcccactgca
agcaaccctgtctacagctctggctacggaggccgtgactgctggtccagcacgcaggtt
ttcgacttgccaaccttcatcatcatgtga

>gi568815595r:129070456_129271757|GENSCAN_predicted_peptide_3|215_aa
MVSLRAPSWSPAAPVQETPQAQKTPTLTGTEDSNYPQTLMFCRKRKRQGPELNGSTGSAQ
TKRTLTETEDSNCPQTLFCRKRKRKGQEVNESTGSARTKPTLAGTEDSNCPQSLMFCRKR
KRKGPEVKGRTGSEREIRPGIGRENSGAPSGGLPVAPARGVITRRRVMGLSQRDWRFSDS
AQAAGLSSGNRSTKCLVFTIGTAGAGGAGRGYVEG

>gi568815595r:129070456_129271757|GENSCAN_predicted_CDS_3|648_bp
atggtgtcgctaagggcgccgtcctggagccccgcggcccctgtccaagaaactccacag
gcccagaagacgccgacgctcacaggaactgaagattccaactacccacagacactgatg
ttttgccggaaacgtaaaagacagggaccggaactgaatgggagtaccggaagtgcccag
acgaagcggacgctcacagaaactgaagattctaactgcccacagacactgttttgtcgg
aaacgtaaaagaaagggacaggaagtgaatgagagtactggaagtgcccggacgaagccg
acgctcgcaggaactgaggattctaactgcccacagagcctgatgttttgtcggaaacgt
aaaagaaagggaccggaagtgaaagggaggaccggaagtgaaagggagatccggccgggg
attgggagagaaaattctggcgctccgtcaggcggtcttccggtagcgccggcacgcggc
gtcatcacacgcagacgtgtgatggggctttcgcagagggactggcggttttcggactca
gcccaggcggcgggtcttagttctggaaacaggagtactaaatgtcttgtgttcactatt
ggtactgcgggagcaggcggcgctgggcgcggttatgtggaaggctga

>gi568815595r:129070456_129271757|GENSCAN_predicted_peptide_4|167_aa
MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRDICYRCGESGHLAKDCDLQ
EDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQK
DCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA

>gi568815595r:129070456_129271757|GENSCAN_predicted_CDS_4|504_bp
atgagcagcaatgagtgcttcaagtgtggacgatctggccactgggcccgggaatgtcct
actggtggaggccgtggtcgtggaatgagaagccgtggcagaggtggttttacctcggat
agagacatttgttatcgctgtggtgagtctggtcatcttgccaaggattgtgatcttcag
gaggatgcctgctataactgcggtagaggtggccacattgccaaggactgcaaggagccc
aagagagagcgagagcaatgctgctacaactgtggcaaaccaggccatctggctcgtgac
tgcgaccatgcagatgagcagaaatgctattcttgtggagaattcggacacattcaaaaa
gactgcaccaaagtgaagtgctataggtgtggtgaaactggtcatgtagccatcaactgc
agcaagacaagtgaagtcaactgttaccgctgtggcgagtcagggcaccttgcacgggaa
tgcacaattgaggctacagcctaa

>gi568815595r:129070456_129271757|GENSCAN_predicted_peptide_5|63_aa
MAAALWPAPLLRQAGSSAAAAASDPGFWRTAVGRHFCPFFVLESWVAEHAGLSAPRPHPR
PQA

>gi568815595r:129070456_129271757|GENSCAN_predicted_CDS_5|192_bp
atggcggccgcactttggcctgcgcctctgctgcgtcaggcgggaagctcggctgctgcc
gccgcctcggacccgggtttctggcgcaccgctgtcggacgacacttctgtcctttcttc
gtcctggaaagctgggtcgccgagcatgcgggtctttcggcgccacggccgcaccccagg
ccgcaggcttag

>gi568815595r:129070456_129271757|GENSCAN_predicted_peptide_6|100_aa
MGQIPHGLVLSLQWVMLETKIKQATTHPYGRMKHGPYNSSGRILCIFAEETKKDVDELDV
ENERKENVKDGSNFWLMQLSGAIERGELVCRDLEQVDESG

>gi568815595r:129070456_129271757|GENSCAN_predicted_CDS_6|303_bp
atggggcagatccctcatggcttggtgctgtccttgcaatgggtcatgctggagactaag
atcaagcaggctaccacgcatccttacgggagaatgaagcacggtccctacaactcttcc
ggaagaattctatgtatatttgctgaagagacaaagaaggatgtggatgaattggatgtg
gagaatgagaggaaagaaaatgtcaaggatggctctaatttctggcttatgcaactgagt
ggtgccattgagagaggtgagctggtctgcagggacttggaacaggttgatgagtctggt
tag

>gi568815595r:129070456_129271757|GENSCAN_predicted_peptide_7|620_aa
MEEADINQIITRVIICKCVICYEGTSYNEMARVFNETPINPRKCAHILTKILYLINQGEH
LGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSRQVMGFLTKDMTG
KEDNYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK
RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVNKMISKVTRHGLKSPFAYCMMIRV
ASKQLEEEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLF
CSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDSNRSIATLAITTLLKTGSES
SIDRLMKQISSFMSEISDEFKVVVVQAISALCQKYPRKHAVLMNFLFTMLREEGGFEYKR
AIVDCIISIIEENSESKETGLSHLCEFIEDCEFTVLATRILHLLGQEGPKTTNPSKYIRF
IYNRVVLEHEEVRAGAVSALAKFGAQNEEMLPSILVLLKRCVMDDDNEVRDRATFYLNVL
EQKQKALNAGYILNGLTVSIPGLERALQQYTLEPSEKPFDLKSVPLATAPMAEQRTESTP
ITAVKQPEKVAATRQEIFQX

>gi568815595r:129070456_129271757|GENSCAN_predicted_CDS_7|1860_bp
atggaggaggcagacatcaaccagataatcacacgtgtaattatttgcaaatgtgtcatc
tgctatgaaggaactagttacaacgagatggcccgtgtatttaatgaaactcccatcaac
cctcggaaatgtgcccacatcctcaccaagattctttatctcataaaccagggggagcac
ctggggaccacggaagcgaccgaggccttctttgccatgaccaagctctttcagtccaat
gatcccacactccgtcggatgtgctacttgaccatcaaggagatgtcttgcattgcagag
gatgtcatcattgtcaccagcaggcaagtcatggggttcctaacaaaagacatgactggg
aaagaagacaactaccggggcccggccgtgcgagccctctgccagatcactgatagcacc
atgctgcaggctattgagcgctacatgaaacaagccattgtggacaaggtgcccagtgtc
tccagctctgccctcgtgtcttccttgcacctgctgaagtgcagctttgacgtggtcaag
cgctgggtgaatgaggctcaggaggcagcatccagtgataacatcatggtccagtaccac
gcactagggctcctgtaccatgtgcgtaagaatgaccgcctagccgtcaataagatgatc
agcaaggtcacacggcatggccttaagtctccctttgcctactgcatgatgatccgggtg
gccagcaagcagctggaagaggaggatggcagccgtgacagcccactgtttgacttcatc
gagagctgcttgcgcaacaagcacgagatggtggtgtatgaagccgcctcggccatcgtc
aatctgccaggctgcagtgccaaagagctggccccggctgtgtcagtgctccagcttttc
tgcagctcacccaaggctgctctccgctatgctgctgttcgtaccctcaataaggttgcc
atgaagcatccgtcagctgtgacagcttgtaatctggatctggagaacctggtcacagat
tcaaaccgcagcattgccacgctggccatcaccaccctccttaagacgggcagcgagagc
agcatcgaccgcctcatgaagcagatctcctccttcatgtcagaaatctcggatgaattc
aaggtggtggttgtccaggccatcagtgccctgtgtcagaaatatcctcgcaaacacgcc
gtccttatgaacttcctgttcaccatgctgcgggaagagggtggctttgagtataagcgc
gctatcgtggactgcatcatcagcatcattgaagagaactcagagagcaaggagacaggg
ctgtcacatctgtgcgagttcatcgaggactgcgagttcacagtgctggccacccgtatt
ctacatctcctgggccaggaggggcccaagaccaccaatccctcaaagtacatccgcttc
atctataaccgagtggtcttggagcatgaggaggtccgggcaggtgctgtgagtgctctg
gcgaagtttggagcccagaatgaagagatgttacccagtatcttggtgttgctgaagagg
tgtgtgatggatgatgacaatgaagtaagggaccgagccaccttctacctaaatgtcctg
gagcagaagcagaaggcccttaatgcaggctatatcctaaatggtctgactgtgtccatc
cctggtctggagagggctctgcagcagtacactctagaaccatcagaaaaaccttttgac
ctcaagtctgtgcccctggccacggcgcccatggcagagcagagaacagaaagtaccccc
atcacagcagtcaaacagcctgagaaagtggcagctaccaggcaggagatcttccaggnn