Result of FASTA (omim) for pF1KB7523
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7523, 144 aa
  1>>>pF1KB7523 144 - 144 aa - 144 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1906+/-0.000287; mu= 12.9878+/- 0.018
 mean_var=67.5009+/-13.382, 0's: 0 Z-trim(119.0): 7  B-trim: 281 in 1/52
 Lambda= 0.156106
 statistics sampled from 32545 (32552) to 32545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.382), width:  16
 Scan time:  4.760

The best scores are:                                      opt bits E(85289)
XP_016868251 (OMIM: 603477) PREDICTED: protein BUD ( 144) 1036 241.1 4.5e-64
XP_005250731 (OMIM: 603477) PREDICTED: protein BUD ( 144) 1036 241.1 4.5e-64
NP_003901 (OMIM: 603477) protein BUD31 homolog [Ho ( 144) 1036 241.1 4.5e-64
XP_005250727 (OMIM: 603477) PREDICTED: protein BUD ( 145)  904 211.4   4e-55
XP_016868249 (OMIM: 603477) PREDICTED: protein BUD ( 145)  904 211.4   4e-55
XP_005250728 (OMIM: 603477) PREDICTED: protein BUD ( 145)  904 211.4   4e-55
XP_016868250 (OMIM: 603477) PREDICTED: protein BUD ( 145)  904 211.4   4e-55


>>XP_016868251 (OMIM: 603477) PREDICTED: protein BUD31 h  (144 aa)
 initn: 1036 init1: 1036 opt: 1036  Z-score: 1271.3  bits: 241.1 E(85289): 4.5e-64
Smith-Waterman score: 1036; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
               70        80        90       100       110       120

              130       140    
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG
       ::::::::::::::::::::::::
XP_016 VPKSKLEVGRIIECTHCGCRGCSG
              130       140    

>>XP_005250731 (OMIM: 603477) PREDICTED: protein BUD31 h  (144 aa)
 initn: 1036 init1: 1036 opt: 1036  Z-score: 1271.3  bits: 241.1 E(85289): 4.5e-64
Smith-Waterman score: 1036; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
               70        80        90       100       110       120

              130       140    
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG
       ::::::::::::::::::::::::
XP_005 VPKSKLEVGRIIECTHCGCRGCSG
              130       140    

>>NP_003901 (OMIM: 603477) protein BUD31 homolog [Homo s  (144 aa)
 initn: 1036 init1: 1036 opt: 1036  Z-score: 1271.3  bits: 241.1 E(85289): 4.5e-64
Smith-Waterman score: 1036; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
               70        80        90       100       110       120

              130       140    
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG
       ::::::::::::::::::::::::
NP_003 VPKSKLEVGRIIECTHCGCRGCSG
              130       140    

>>XP_005250727 (OMIM: 603477) PREDICTED: protein BUD31 h  (145 aa)
 initn: 902 init1: 902 opt: 904  Z-score: 1110.6  bits: 211.4 E(85289): 4e-55
Smith-Waterman score: 904; 93.5% identity (95.7% similar) in 139 aa overlap (1-139:1-137)

               10        20        30        40        50        60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
               70        80        90       100       110       120

              130       140       
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG   
       ::::::::  ..  :.  :        
XP_005 VPKSKLEV--VMSDTQAWCCFQLKILP
                130       140     

>>XP_016868249 (OMIM: 603477) PREDICTED: protein BUD31 h  (145 aa)
 initn: 902 init1: 902 opt: 904  Z-score: 1110.6  bits: 211.4 E(85289): 4e-55
Smith-Waterman score: 904; 93.5% identity (95.7% similar) in 139 aa overlap (1-139:1-137)

               10        20        30        40        50        60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
               70        80        90       100       110       120

              130       140       
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG   
       ::::::::  ..  :.  :        
XP_016 VPKSKLEV--VMSDTQAWCCFQLKILP
                130       140     

>>XP_005250728 (OMIM: 603477) PREDICTED: protein BUD31 h  (145 aa)
 initn: 902 init1: 902 opt: 904  Z-score: 1110.6  bits: 211.4 E(85289): 4e-55
Smith-Waterman score: 904; 93.5% identity (95.7% similar) in 139 aa overlap (1-139:1-137)

               10        20        30        40        50        60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
               70        80        90       100       110       120

              130       140       
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG   
       ::::::::  ..  :.  :        
XP_005 VPKSKLEV--VMSDTQAWCCFQLKILP
                130       140     

>>XP_016868250 (OMIM: 603477) PREDICTED: protein BUD31 h  (145 aa)
 initn: 902 init1: 902 opt: 904  Z-score: 1110.6  bits: 211.4 E(85289): 4e-55
Smith-Waterman score: 904; 93.5% identity (95.7% similar) in 139 aa overlap (1-139:1-137)

               10        20        30        40        50        60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
               70        80        90       100       110       120

              130       140       
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG   
       ::::::::  ..  :.  :        
XP_016 VPKSKLEV--VMSDTQAWCCFQLKILP
                130       140     




144 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:25:26 2016 done: Fri Nov  4 08:25:27 2016
 Total Scan time:  4.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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