Result of FASTA (omim) for pF1KB7512
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7512, 243 aa
  1>>>pF1KB7512 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8176+/-0.000291; mu= 6.2828+/- 0.019
 mean_var=220.5937+/-51.653, 0's: 0 Z-trim(122.7): 4  B-trim: 2251 in 1/55
 Lambda= 0.086353
 statistics sampled from 41107 (41127) to 41107 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.482), width:  16
 Scan time:  7.810

The best scores are:                                      opt bits E(85289)
NP_778231 (OMIM: 606246) juxtaposed with another z ( 243) 1643 216.3 3.9e-56
XP_016867320 (OMIM: 606246) PREDICTED: juxtaposed  ( 179) 1207 161.8 7.1e-40
XP_016867321 (OMIM: 606246) PREDICTED: juxtaposed  ( 179) 1207 161.8 7.1e-40
XP_006715719 (OMIM: 606246) PREDICTED: juxtaposed  ( 179) 1207 161.8 7.1e-40


>>NP_778231 (OMIM: 606246) juxtaposed with another zinc   (243 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1128.8  bits: 216.3 E(85289): 3.9e-56
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KB7 MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQELQQPTYVALSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_778 MTGIAAASFFSNTCRFGGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQELQQPTYVALSY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 INRFMTDAARREQESLKKKIQPKLSLTLSSSVSRGNVSTPPRHSSGSLTPPVTPPITPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_778 INRFMTDAARREQESLKKKIQPKLSLTLSSSVSRGNVSTPPRHSSGSLTPPVTPPITPSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SFRSSTPTGSEYDEEEVDYEESDSDESWTTESAISSEAILSSMCMNGGEEKPFACPVPGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_778 SFRSSTPTGSEYDEEEVDYEESDSDESWTTESAISSEAILSSMCMNGGEEKPFACPVPGC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGKSYKTAQGLRHHTINFHPPVSAEIIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_778 KKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGKSYKTAQGLRHHTINFHPPVSAEIIRK
              190       200       210       220       230       240

          
pF1KB7 MQQ
       :::
NP_778 MQQ
          

>>XP_016867320 (OMIM: 606246) PREDICTED: juxtaposed with  (179 aa)
 initn: 1207 init1: 1207 opt: 1207  Z-score: 836.8  bits: 161.8 E(85289): 7.1e-40
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 179 aa overlap (65-243:1-179)

           40        50        60        70        80        90    
pF1KB7 DNHIDTDPRVLEKQELQQPTYVALSYINRFMTDAARREQESLKKKIQPKLSLTLSSSVSR
                                     ::::::::::::::::::::::::::::::
XP_016                               MTDAARREQESLKKKIQPKLSLTLSSSVSR
                                             10        20        30

          100       110       120       130       140       150    
pF1KB7 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
               40        50        60        70        80        90

          160       170       180       190       200       210    
pF1KB7 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
              100       110       120       130       140       150

          220       230       240   
pF1KB7 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
       :::::::::::::::::::::::::::::
XP_016 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
              160       170         

>>XP_016867321 (OMIM: 606246) PREDICTED: juxtaposed with  (179 aa)
 initn: 1207 init1: 1207 opt: 1207  Z-score: 836.8  bits: 161.8 E(85289): 7.1e-40
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 179 aa overlap (65-243:1-179)

           40        50        60        70        80        90    
pF1KB7 DNHIDTDPRVLEKQELQQPTYVALSYINRFMTDAARREQESLKKKIQPKLSLTLSSSVSR
                                     ::::::::::::::::::::::::::::::
XP_016                               MTDAARREQESLKKKIQPKLSLTLSSSVSR
                                             10        20        30

          100       110       120       130       140       150    
pF1KB7 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
               40        50        60        70        80        90

          160       170       180       190       200       210    
pF1KB7 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
              100       110       120       130       140       150

          220       230       240   
pF1KB7 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
       :::::::::::::::::::::::::::::
XP_016 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
              160       170         

>>XP_006715719 (OMIM: 606246) PREDICTED: juxtaposed with  (179 aa)
 initn: 1207 init1: 1207 opt: 1207  Z-score: 836.8  bits: 161.8 E(85289): 7.1e-40
Smith-Waterman score: 1207; 100.0% identity (100.0% similar) in 179 aa overlap (65-243:1-179)

           40        50        60        70        80        90    
pF1KB7 DNHIDTDPRVLEKQELQQPTYVALSYINRFMTDAARREQESLKKKIQPKLSLTLSSSVSR
                                     ::::::::::::::::::::::::::::::
XP_006                               MTDAARREQESLKKKIQPKLSLTLSSSVSR
                                             10        20        30

          100       110       120       130       140       150    
pF1KB7 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GNVSTPPRHSSGSLTPPVTPPITPSSSFRSSTPTGSEYDEEEVDYEESDSDESWTTESAI
               40        50        60        70        80        90

          160       170       180       190       200       210    
pF1KB7 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSEAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKPFKCRCGK
              100       110       120       130       140       150

          220       230       240   
pF1KB7 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
       :::::::::::::::::::::::::::::
XP_006 SYKTAQGLRHHTINFHPPVSAEIIRKMQQ
              160       170         




243 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:19:34 2016 done: Fri Nov  4 08:19:35 2016
 Total Scan time:  7.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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