GENSCAN 1.0	Date run:  4-Nov-116	Time: 07:57:59

Sequence gi568815594r:42019959_42252677 : 232719 bp : 40.68% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2880   2972   93  0  0   86   69   122 0.903   8.26
 1.02 Intr +   3344   3426   83  2  2   38  106    83 0.807   3.46
 1.03 Intr +   4131   4251  121  1  1   61   64    64 0.528  -0.07
 1.04 Term +   9262   9685  424  1  1   81   51   355 0.618  24.88
 1.05 PlyA +  10941  10946    6                               1.05

 2.00 Prom +  17704  17743   40                              -4.85
 2.01 Init +  22808  22969  162  1  0   70   97   127 0.810  11.58
 2.02 Intr +  23222  23370  149  1  2   69  116   106 0.942   9.61
 2.03 Intr +  29419  29521  103  1  1  119   94    -9 0.173   2.06
 2.04 Intr +  40233  40288   56  2  2  128   66    34 0.065   2.06
 2.05 Intr +  47758  47861  104  1  2   86   75    45 0.063   1.90
 2.06 Intr +  50568  50733  166  1  1   73   82   100 0.794   6.00
 2.07 Intr +  53719  53826  108  1  0   39   92    81 0.769   2.08
 2.08 Intr +  55699  55828  130  1  1   66  108    82 0.999   7.78
 2.09 Intr +  58254  58367  114  2  0  110   69    97 0.995   9.72
 2.10 Term +  65212  65262   51  0  0  101   37    52 0.406  -2.15
 2.11 PlyA +  65575  65580    6                               1.05

 3.11 PlyA -  65595  65590    6                               1.05
 3.10 Term -  86010  85942   69  0  0   59   44   132 0.436   2.86
 3.09 Intr -  93520  93503   18  1  0   94  103    25 0.036   0.49
 3.08 Intr -  97777  97668  110  2  2   96   40    55 0.061   0.58
 3.07 Intr - 100336 100096  241  1  1   81   69   126 0.135   6.20
 3.06 Intr - 102978 102861  118  2  1   29   91    76 0.166   1.55
 3.05 Intr - 112055 111935  121  0  1   89   27    60 0.000  -1.37
 3.04 Intr - 124036 123470  567  2  0  114   68   425 0.995  34.92
 3.03 Intr - 126325 126089  237  2  0   86   52    87 0.016   1.56
 3.02 Intr - 132418 131699  720  2  0  119   81   517 0.034  44.57
 3.01 Init - 133022 132644  379  2  1   83  -45   297 0.540  13.01
 3.00 Prom - 135132 135093   40                              -2.95

 4.00 Prom + 136890 136929   40                              -7.65
 4.01 Sngl + 138488 138709  222  1  0   75   48   293 0.896  18.90
 4.02 PlyA + 139423 139428    6                               1.05

 5.04 PlyA - 140994 140989    6                               1.05
 5.03 Term - 142780 142648  133  0  1   20   45   117 0.038  -2.82
 5.02 Intr - 152602 152427  176  1  2   85   86   160 0.329  13.32
 5.01 Init - 179569 179327  243  1  0   48  113   162 0.375  12.48
 5.00 Prom - 179822 179783   40                              -9.05

 6.03 PlyA - 180203 180198    6                               1.05
 6.02 Term - 181341 181082  260  1  2  112   47   133 0.818   6.33
 6.01 Init - 183824 183671  154  2  1   75   68   117 0.480   7.99
 6.00 Prom - 184434 184395   40                              -6.65

 7.00 Prom + 186067 186106   40                              -8.55
 7.01 Init + 186135 186179   45  2  0   64   95    61 0.310   5.14
 7.02 Term + 198925 199116  192  0  0   86   38   119 0.304   3.14
 7.03 PlyA + 200843 200848    6                               1.05

 8.00 Prom + 210233 210272   40                              -5.65
 8.01 Init + 214220 214250   31  1  1   88   89    15 0.588   1.55
 8.02 Intr + 218736 218940  205  1  1   70   55   206 0.769  12.84
 8.03 Term + 225223 225475  253  1  1   33   33   210 0.464   4.13
 8.04 PlyA + 226225 226230    6                               1.05

 9.03 PlyA - 226744 226739    6                               1.05
 9.02 Term - 227295 227267   29  1  2   94   48    41 0.538  -2.04
 9.01 Intr - 229264 229088  177  2  0   68   87   153 0.364  12.17

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr + 112235 112287   53  1  2   53   86    73 0.834   0.39
S.002 Term - 132418 131490  929  2  2  119   42   570 0.907  46.82


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594r:42019959_42252677|GENSCAN_predicted_peptide_1|240_aa
XDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYREK
GSINSATLINSADIYPIPAMNKKLCLVFEMYMQVRLLGARKANEEGSWKKFFWNSEKKEF
LGRTGGSWFKIILFYIIFYGCLTGIFIGMIQVVLLTISEFKPTYQNHISGPPPGLTQISQ
IQQTEIAFHPNDPKHCEAYVLNVVRFLEKYKDSAQKDDMIFENCDNVPSEPKERGDFNQE

>gi568815594r:42019959_42252677|GENSCAN_predicted_CDS_1|723_bp
nntgatctagaacaacttcgaaaaatcagacgacgaagtccccatgaagatactgagtct
tttactgtatacttgagatcagatgtggaagcaaaatctttggaagtttggggaagccct
gaagctcttgccagagagaaaaaattgcgtaaggaagcagaaatagaatacagagaaaaa
gggtctattaactcagctacattaattaattcagcagatatttatccaatacccgctatg
aacaagaagctgtgcttggtgtttgaaatgtatatgcaagtaagactcttaggagccagg
aaagccaatgaggagggcagttggaagaaattcttctggaactcagagaagaaggagttt
ttaggcaggactggtggcagttggtttaagatcattctattctacataatattttatggc
tgcctgactggcatcttcatcggaatgatccaagtggtgctgctcaccatcagtgaattt
aaacccacatatcagaaccacatatcaggacccccaccaggattaacacagatttctcag
atccagcagactgaaattgcctttcatcctaatgatcccaagcactgtgaggcatatgtg
ctgaacgtagttaggttcctggaaaagtacaaagattcagcccagaaggatgacatgatt
tttgaaaattgtgacaatgtgcccagtgaacccaaagaacgaggagactttaatcaagaa
tga

>gi568815594r:42019959_42252677|GENSCAN_predicted_peptide_2|380_aa
MPPDGEIPPSRDQQTPHTGELQLTSGRCSSGMKLPEEGTGSNVCCSAAPAVDTQDHNSSP
AREQNWTENEFDEVGFRKWVITNSSKLKEHVPTQRKKAKNLEKSNGLNCFFKFLAWIYTG
SASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPFSLGTPTSSHITMPYMVSELGCL
NSPNLSECGGVCNPLYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELL
ENDPSVRFSSLPNGPLQHGSLLNQSVQIDKAIESECEQDKSHRAIHDVKATDLGLGKVRF
KAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIIDTLGAEVDRLE
KELKTLFIIYLEGSSYADLP

>gi568815594r:42019959_42252677|GENSCAN_predicted_CDS_2|1143_bp
atgcctcctgatggggagatacctcccagcagggatcaacagacacctcatacaggagag
ctccagctgacatctggcaggtgctcctctgggatgaagcttccagaggaaggaacaggc
agcaatgtttgctgttctgcagcccctgctgttgatacccaggatcacaactcctcgcca
gcaagggaacaaaactggacggagaatgagtttgacgaagtaggcttcagaaagtgggta
ataacaaactcctccaagctaaaggagcatgttccaacccaacgcaagaaagctaagaac
cttgaaaaaagcaatggattaaactgcttctttaaatttcttgcctggatttataccggt
tcagcaagtatgttctcagaagctatacactcattatctgatacttgtaatcagggttta
ctagcattgggcatcagtaagtctgttcaaacaccagatccttctcatccgttttctttg
ggcaccccaacttcctcccacatcacaatgccgtacatggtcagtgaattggggtgtcta
aatagtcccaatctgagtgagtgtgggggtgtgtgcaatccactgtatgacagcctaggt
tctttgggtgtgggcaccttattaggcatggtctcagcattcctcatctacactaacaca
gaagcactcttagggcggtccatccagccagaacaagtacaacggctcactgaactcctg
gagaatgacccatcagtaagatttagctccttgccaaatgggcctcttcaacatggcagc
ttgcttaatcaaagcgtgcaaattgataaggcaatagagagcgagtgtgaacaagacaaa
agtcacagggcaattcatgatgttaaagccacagatctgggattaggtaaagtaagattt
aaggcagaagtagattttgatgggcgagttgttacaagatcatatttggaaaaacaagat
tttgaccaaatgttacaagaaattcaagaagtgaaaactcctgaagaactagagaccttt
atgcttaaacatggagaaaatattattgatactttaggagctgaagtagatagacttgag
aaggaactgaaaacactcttcattatctacctggaaggctcatcatatgcagacctacct
tag

>gi568815594r:42019959_42252677|GENSCAN_predicted_peptide_3|859_aa
MVSCTFSGPLRETNENVKKFYALRAFMFRMSSEAAMLGESRTPKPRKHRATTRAKIFKRF
FSEGSESNSRLVEELAVIHTYSDDPAPTTSPSSVQPREFGVMQGAPRARFGSRTPPAAAE
ASSPHLGIGEAACQSGARAAAPRAGARRCQPQRQAAAAAATAQTHTLPHARTRADPAGRR
RRHPRSPAPGGEGTCSEGPAPRRRMEEEMQPAEEGPSVPKIYKQRSPYSVLKTFPSKRPA
LAKRYERPTLVELPHVRAPPPPPPPFAPHAAVSISSSEPPPQQFQAQSSYPPGPGRAAAA
ASSSSPSCTPATSQGHLRTPAQPPPASPAASSSSSFAAVVRYGPGAAAAAGTGGTGSDSA
SLELSAGGTSHTHMWRSQSTLPGSDTMVSVFGLMAQRRWQHRSLKQFEWGILGSWGTWPC
GQDWLEKEGQVAVLLPRSEGNTAPKKSRMILDAFAQQCSRVLSLLNCGGKLLDSNHSQSM
ISCVKQEGSSYNERQEHCHIGKGVHSQTSDNVDIEMQYMQRKQQTSAFLRVFTDSLQNYL
LSGSFPTPNPSSASEYGHLADVDPLSTSPVHTLGGWTSPATSESHGHPSSSTLPEEEEEE
DEEGYCPRCQELEQEVISLQQENEELRRKLESIPENISLDSTASLCKSRHLSREPPVKSD
FPNPLQQALAGGASRPFSGAQQSIAYRVNSELEDGIRSPVPLSCEALEMDLTSLGSKQLL
NNYPVYITSKQWDEAVNSSKKDGRRLLRYLIRFVFTTDELKYSCGLGKRKRSVQSGETGP
ERRPLDPVKVTCLREFIRMHCTSNPDWWMPSEEQINKVFSDAVGHARQGRAKTDGDQNHL
MTQFSEPVLIIEQRTTDEE

>gi568815594r:42019959_42252677|GENSCAN_predicted_CDS_3|2580_bp
atggtgtcatgcacgttctcggggcccctacgggaaacaaatgaaaacgtgaaaaagttc
tacgccttgcgagcttttatgttccgcatgagctcagaggccgcgatgctcggggaaagc
aggaccccaaagccccgtaaacaccgcgcgaccacccgggccaagatcttcaagaggttc
ttttcagaaggatcggagagcaattcccgattggtagaagaacttgctgtaatacacacg
tactctgacgaccccgccccaacgactagcccctcctctgtgcaaccccgagagtttggg
gtcatgcagggggcgccacgagctcgtttcggaagccggaccccgcccgcagccgcagaa
gcctcgagtccacatctgggcattggcgaggcagcctgtcaatcaggagctcgggcggca
gccccccgcgcgggggctcggcgatgccagcctcagcgacaggcggcggcggcggcggcc
acggcacagacacacaccctcccacacgcgcgcaccagggcagacccggcgggcaggcgg
cggaggcaccctcggagcccggcgcccggcggggaggggacgtgctccgagggaccggcc
ccgaggcgccggatggaggaagagatgcagccggcagaggaggggcccagcgtccccaaa
atctacaagcagcgcagcccctacagcgtcctcaagacgttccccagcaagagaccggcg
ctggccaagcgctacgagcgacccaccctggtggagctgccgcacgtgcgggcgcccccg
ccgcccccgccgcccttcgcgccgcacgccgccgtctccatcagcagcagcgagccgccg
ccgcagcagttccaggcgcagagctcctacccccccgggcccggccgggccgccgccgcc
gcttcgtcgtcgtcgccgtcctgcacgcccgccacatcccagggccacttgaggactccg
gcgcagccgccgcccgcgtcccccgccgcctcctcgtcgtcttcgttcgccgctgtcgtc
aggtatggcccaggcgcggcggcggccgccggcaccggcggcacgggtagcgacagcgcc
agcctggagctcagcgcaggagggacctcacatacacatatgtggaggtcccagtccaca
cttccaggatctgacaccatggtctctgtctttggattgatggctcagagaagatggcag
catagatctttaaagcagtttgagtggggaattcttggatcttggggtacttggccatgt
ggacaggattggctggagaaggagggtcaggtggcggtcctgctgccaaggtctgagggt
aatactgctcctaagaagagtcgaatgatcttggatgcctttgcccagcagtgcagtcga
gttcttagcctcttaaattgtggaggaaaactcctggactccaaccattctcagtccatg
atttcttgcgtaaagcaggaaggctcaagttacaacgaaagacaggagcactgtcacatt
gggaaaggggtccacagtcagacctcagacaatgtagacatagagatgcagtatatgcaa
aggaaacaacaaacttctgcctttttgagggttttcactgactctctacaaaattacctg
ctctcgggaagctttccaactccaaacccctcgtcagccagtgaatatggccatctggcc
gacgtggatcctctgtcaacctctcctgtgcatacattaggtggctggacttccccagca
acgtccgaatcccatggccacccatcttcatctacactgccagaagaggaggaggaggag
gacgaggaaggctattgtcctcgatgccaagagctggagcaggaggttatttcactgcaa
caagaaaatgaagagctcagaaggaaattagagagcatcccagaaaatatttcacttgat
tccacagcttccctgtgtaaatctaggcatctatccagagagcccccagtcaagagtgat
tttccaaatcctttgcagcaggccttggctgggggtgcttcaagaccattttcaggggca
cagcaaagcatcgcttacagggtgaactctgaacttgaggatggcatccgcagccccgtc
cctttgagttgtgaggccttggaaatggatttgacctccttgggaagcaagcagctgttg
aacaactatcctgtctacataacgagcaaacagtgggatgaggctgtaaattcttcaaag
aaagatgggagacggctccttcgatacctcatcagatttgttttcacaaccgatgagctt
aagtactcatgcggccttgggaaaaggaaaaggtcagtgcagtcaggagagacaggtccc
gaaagacgccctctggatccagttaaagtaacatgcctccgagaattcattaggatgcat
tgtacctccaaccccgattggtggatgccctcggaagagcagataaacaaagtgttcagc
gacgctgtcggtcacgcccgacaggggcgggcgaaaacagatggagatcagaatcaccta
atgacacagttctcagaacctgtcctcatcattgagcaacgcacgactgatgaagagtag

>gi568815594r:42019959_42252677|GENSCAN_predicted_peptide_4|73_aa
MQEQWQAFSPIGSGNGRLAGSGAQQTPCQIQRDGSQWQVCDGGKQQWWTASESSARAVTN
MDQKRVRLQDLIE

>gi568815594r:42019959_42252677|GENSCAN_predicted_CDS_4|222_bp
atgcaggaacaatggcaagcctttagtccgatcgggagtggcaatgggcgccttgctgga
tcaggagcacagcagacaccctgccagatccagagggatggaagtcagtggcaggtctgc
gacggcggcaaacagcagtggtggacggcaagcgaaagctcagctcgagctgtaacaaac
atggaccagaagagagtgcggttgcaagatttaatagagtga

>gi568815594r:42019959_42252677|GENSCAN_predicted_peptide_5|183_aa
MTQGFPRGTEKKRLEIEQKIRMVALRGEEPFGSPSQKTEEGIPESLPMEFQEAKWFDKDT
HILAKTLLAYLDNGIQGQWLKGMLAHTENLIRDIKELKEQPHGSEGKRVPGRENSKLRDP
ETRLLLEGSRNSQTGVDGVGLGSKSETPSKKKKEVPQTGWLKQQKFEQRQGRRENVMEDE
DGD

>gi568815594r:42019959_42252677|GENSCAN_predicted_CDS_5|552_bp
atgacccagggcttccctagaggtacagaaaagaagaggttggagattgagcaaaaaata
agaatggtggcactaagaggagaggaaccattcggttcaccttcacagaaaactgaagaa
ggaattcctgaaagcttaccaatggagttccaggaagccaagtggtttgataaagacaca
cacatacttgccaagaccttgttagcctacttggataatggaatacagggacagtggttg
aagggcatgcttgctcacactgagaatttgatcagagacataaaggagctgaaggagcaa
ccccatggatctgaggggaagagagttccaggcagagagaacagcaagctcagagaccct
gaaacaaggctgctccttgagggctccagaaacagccagactggtgtggatggagtgggc
ctcggcagcaagagtgaaactccatctaaaaaaaaaaaagaagtaccacaaactgggtgg
ctgaaacaacagaaatttgaacagagacagggacgtagggagaatgtcatggaagatgaa
gatggagattga

>gi568815594r:42019959_42252677|GENSCAN_predicted_peptide_6|137_aa
MEAMAKSRSSVCLGILVCSELLRALPGAAGYLSPSVGPGTTKDPMPASFGPGRHANIIIF
NVCLGVQKTEKHGLKDLLTEKEKHHENLNWNWHGGQEFSCSEYLHGGGLGTSNGFQSKPK
CQHYPTTEAMKVLTESG

>gi568815594r:42019959_42252677|GENSCAN_predicted_CDS_6|414_bp
atggaagcaatggctaagagcagatcttccgtgtgccttggcatcctggtgtgctctgaa
ttgttaagagctttgcctggagctgcaggatacctcagcccttcagtaggacctgggaca
accaaagaccccatgccggccagctttggcccagggcgccatgcaaatatcatcattttc
aatgtctgccttggtgttcaaaagactgagaaacacgggttaaaagacttgttaacggag
aaggagaaacatcatgaaaacctaaattggaactggcatggaggccaggaattcagttgt
tctgagtatctccacggtggtggacttggaacctcaaatgggttccagtcaaaacccaag
tgtcaacactacccaacgacagaggccatgaaggttctaacagagtctggctga

>gi568815594r:42019959_42252677|GENSCAN_predicted_peptide_7|78_aa
MAGYNILRAVSFNDQEQGQSRDYTGMNEDAICMVGPSEHLQARWRLFSSCPPTFLLRPPP
LLMATQISYFTPISVVIS

>gi568815594r:42019959_42252677|GENSCAN_predicted_CDS_7|237_bp
atggcgggatacaatatcctgagagcagtttccttcaacgaccaggagcagggacaaagc
agagattacacggggatgaacgaagatgcaatctgcatggttggcccctcagaacatctt
caggctcggtggcgtcttttcagttcctgtccccccaccttcctcctgaggccacccccg
ctgctcatggccacacaaatctcttatttcacccccatttctgttgtgatctcctag

>gi568815594r:42019959_42252677|GENSCAN_predicted_peptide_8|162_aa
METPEIEAWNDRQQEETKPEEKNGAGSSVKTLPGCKEAALIMQRMQLEELFDLTVVTEIC
AASSDLEQEVILEFWKDSSSGHSKLKTFWKWFTILDAIKNTCESWEEVKISTLREVWKKL
IPVLKDDFEGFKTLVEEVTADVVEIARELELEVEPEDETELL

>gi568815594r:42019959_42252677|GENSCAN_predicted_CDS_8|489_bp
atggagacgcccgagattgaagcctggaatgacagacagcaagaagaaacgaaaccagag
gagaagaatggagctggatcgtctgtgaagaccctgccaggctgcaaagaagctgcactc
ataatgcagagaatgcagctggaggagctctttgatttaactgttgttactgaaatctgt
gcagcatcaagtgacttagagcaggaagttatcttagaattctggaaagattcaagctct
ggacatagtaaattgaaaaccttctggaaatggtttaccattctcgatgccattaagaac
acttgtgaatcatgggaggaagtcaaaatatcaacattaagagaagtttggaagaagtta
attccagtcctcaaggatgactttgaggggttcaagactttagtggaggaagtaactgca
gatgtggtggaaatagcaagagaactagaattagaagtggagcccgaagatgagactgaa
ttgctgtaa

>gi568815594r:42019959_42252677|GENSCAN_predicted_peptide_9|68_aa
XNNTTSPLAVMQSHVTSPAQWTVNKRDIRPFHAKAVNAKDLTAPGNLAALVRVAEPQDER
QPPAKCGY

>gi568815594r:42019959_42252677|GENSCAN_predicted_CDS_9|207_bp
nagaataacaccacaagccctcttgcagttatgcaaagtcacgtgactagccctgcacaa
tggactgtgaataagagagatatacgtcccttccatgcaaaggctgtgaatgccaaggat
ctcacagctccgggcaatctggcagccctggtgagggtagcagaaccacaagatgaaagg
cagccaccagccaaatgtggctactag