Result of FASTA (omim) for pF1KB7422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7422, 136 aa
  1>>>pF1KB7422 136 - 136 aa - 136 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8045+/-0.000318; mu= 14.8533+/- 0.020
 mean_var=65.5695+/-12.816, 0's: 0 Z-trim(115.6): 20  B-trim: 0 in 0/55
 Lambda= 0.158388
 statistics sampled from 26195 (26215) to 26195 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.307), width:  16
 Scan time:  4.670

The best scores are:                                      opt bits E(85289)
NP_066403 (OMIM: 142780) histone H3.2 [Homo sapien ( 136)  862 204.9 3.3e-53
NP_003527 (OMIM: 602818) histone H3.1 [Homo sapien ( 136)  856 203.5 8.5e-53
NP_003521 (OMIM: 602811) histone H3.1 [Homo sapien ( 136)  856 203.5 8.5e-53
NP_003526 (OMIM: 602817) histone H3.1 [Homo sapien ( 136)  856 203.5 8.5e-53
NP_003522 (OMIM: 602812) histone H3.1 [Homo sapien ( 136)  856 203.5 8.5e-53
NP_003520 (OMIM: 602810) histone H3.1 [Homo sapien ( 136)  856 203.5 8.5e-53
NP_003528 (OMIM: 602819) histone H3.1 [Homo sapien ( 136)  856 203.5 8.5e-53
NP_003524 (OMIM: 602814) histone H3.1 [Homo sapien ( 136)  856 203.5 8.5e-53
NP_003523 (OMIM: 602813) histone H3.1 [Homo sapien ( 136)  856 203.5 8.5e-53
NP_066298 (OMIM: 602816) histone H3.1 [Homo sapien ( 136)  856 203.5 8.5e-53
NP_003525 (OMIM: 602815) histone H3.1 [Homo sapien ( 136)  856 203.5 8.5e-53
NP_002098 (OMIM: 601128) histone H3.3 [Homo sapien ( 136)  843 200.6 6.7e-52
NP_005315 (OMIM: 601058) histone H3.3 [Homo sapien ( 136)  843 200.6 6.7e-52
NP_003484 (OMIM: 602820) histone H3.1t [Homo sapie ( 136)  838 199.4 1.5e-51
NP_001013721 (OMIM: 616134) histone H3.3C [Homo sa ( 135)  797 190.0 9.7e-49
NP_001800 (OMIM: 117139) histone H3-like centromer ( 140)  376 93.9 9.1e-20
NP_001035891 (OMIM: 117139) histone H3-like centro ( 114)  170 46.7 1.2e-05


>>NP_066403 (OMIM: 142780) histone H3.2 [Homo sapiens]    (136 aa)
 initn: 862 init1: 862 opt: 862  Z-score: 1076.2  bits: 204.9 E(85289): 3.3e-53
Smith-Waterman score: 862; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KB7 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_066 MPKDIQLARRIRGERA
              130      

>>NP_003527 (OMIM: 602818) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1068.8  bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KB7 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003521 (OMIM: 602811) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1068.8  bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KB7 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003526 (OMIM: 602817) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1068.8  bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KB7 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003522 (OMIM: 602812) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1068.8  bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KB7 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003520 (OMIM: 602810) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1068.8  bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KB7 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003528 (OMIM: 602819) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1068.8  bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KB7 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003524 (OMIM: 602814) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1068.8  bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KB7 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003523 (OMIM: 602813) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1068.8  bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KB7 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_066298 (OMIM: 602816) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 856 init1: 856 opt: 856  Z-score: 1068.8  bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_066 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KB7 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_066 MPKDIQLARRIRGERA
              130      




136 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:39:23 2016 done: Fri Nov  4 07:39:24 2016
 Total Scan time:  4.670 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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