GENSCAN 1.0	Date run:  4-Nov-116	Time: 07:06:46

Sequence gi568815591f:120851164_121074841 : 223678 bp : 37.06% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   6375   6673  299  2  2   59    6   303 0.425  14.19
 1.02 Term +   8235   8349  115  0  1   60   42   111 0.220   0.76
 1.03 PlyA +   8483   8488    6                               1.05

 2.04 PlyA -   9067   9062    6                               1.05
 2.03 Term -  17015  16857  159  2  0   58   45   141 0.364   3.76
 2.02 Intr -  38615  38425  191  0  2  110   75    13 0.181   0.58
 2.01 Init -  42269  41867  403  2  1   53   57   227 0.329  12.94
 2.00 Prom -  42740  42701   40                              -9.05

 3.00 Prom +  43428  43467   40                              -9.85
 3.01 Init +  43746  43881  136  2  1   53   57   128 0.431   6.55
 3.02 Term +  50400  50884  485  1  2   82   48   341 0.974  23.42
 3.03 PlyA +  50960  50965    6                               1.05

 4.00 Prom +  51994  52033   40                              -6.95
 4.01 Sngl +  52830  53309  480  2  0   15   41   263 0.566  10.13
 4.02 PlyA +  53396  53401    6                               1.05

 5.00 Prom +  56453  56492   40                              -3.15
 5.01 Init +  84295  84418  124  0  1   68   67    80 0.414   4.28
 5.02 Intr + 100001 100072   72  0  0  101   89   214 0.994  21.26
 5.03 Intr + 102141 102241  101  1  2   91   53    67 0.989   2.41
 5.04 Intr + 104396 104461   66  1  0   48  111    97 0.979   6.18
 5.05 Intr + 113579 113675   97  1  1   66   88    65 0.888   2.96
 5.06 Intr + 115463 115534   72  0  0  104  106    44 0.987   6.26
 5.07 Intr + 116366 116485  120  0  0   48   97    96 0.976   6.05
 5.08 Intr + 116771 116928  158  0  2   86   98   147 0.991  14.31
 5.09 Intr + 117848 118041  194  1  2   26  108   239 0.989  17.07
 5.10 Intr + 119525 119717  193  2  1   55   98   230 0.994  19.27
 5.11 Intr + 138435 138707  273  2  0   51  116   148 0.573  10.71
 5.12 Term + 139746 139760   15  2  0  103   53    16 0.720  -3.14
 5.13 PlyA + 139914 139919    6                               1.05

 6.03 PlyA - 140398 140393    6                               1.05
 6.02 Term - 144835 144697  139  0  1  -30   42   467 0.911  26.75
 6.01 Init - 147268 147228   41  1  2   42  110   -12 0.370  -3.89
 6.00 Prom - 147629 147590   40                              -1.35

 7.00 Prom + 150835 150874   40                              -6.15
 7.01 Init + 158604 158672   69  2  0   71   30    74 0.535   1.00
 7.02 Intr + 164502 164685  184  2  1   85   77   134 0.511  10.44
 7.03 Intr + 195724 195830  107  2  2  101   94    19 0.088   2.81
 7.04 Term + 199745 200044  300  1  0   73   37   473 0.998  34.94
 7.05 PlyA + 200818 200823    6                               1.05

 8.04 PlyA - 201568 201563    6                               1.05
 8.03 Term - 209755 209547  209  2  2   56   43   176 0.088   6.42
 8.02 Intr - 209857 209835   23  0  2   43  101    42 0.018  -2.73
 8.01 Init - 217028 216610  419  2  2   71   48   174 0.043   7.65
 8.00 Prom - 217082 217043   40                              -6.35

 9.03 PlyA - 217623 217618    6                               1.05
 9.02 Term - 222951 222764  188  1  2   48   32   172 0.760   4.27
 9.01 Init - 223645 223561   85  1  1   60  100    50 0.596   4.43

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 217028 216603  426  2  0   71   44   172 0.845   7.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:120851164_121074841|GENSCAN_predicted_peptide_1|137_aa
MQLCRRRVSHSNPASPARDAPATPRSKPPAEHKASAATDPAIASARPRQGARGSAGGREP
QSQPLSSLAHSAEGSRRRAGGTAGRKGDRRVATYRRRWARVHAYFKQRTAETTSHPNAVG
AIHSPERYKHPRIERSP

>gi568815591f:120851164_121074841|GENSCAN_predicted_CDS_1|414_bp
atgcagctgtgcagacgccgggttagtcattcaaaccccgcttcccccgcccgggacgct
cccgcgacccctcgctcaaagccgcccgcggagcacaaagcgagcgcggccaccgaccca
gccatcgcgtccgcgcgcccccggcagggcgcgaggggaagcgccggcggcagggagccc
cagagccagcccttaagtagtttagcacacagcgcggagggcagccgccggcgggctggc
gggacagcgggcaggaaaggcgacagacgcgtggccacttaccgtcggcgctgggcccgg
gtgcatgcctattttaagcaaaggactgctgaaacaaccagccatccaaatgctgttggt
gccatacattccccggagaggtataaacatccccgcattgaaaggagtccatga

>gi568815591f:120851164_121074841|GENSCAN_predicted_peptide_2|250_aa
MSAGTKIMHFLKNTFLSCIENAALMWVQDFYRKGIPIDSNMIREKAKSLYDHLKQKEGER
SKAGEFSASKGWFDAFNKNVKITEAASADQEAIHEFPDTIKKMIKGKIYLPEEVLMKMKV
CPSLEKNMSLRTFINPMPSVTESFQSSFSTDPSDLSPPPQTAPRQAELGPNSSSASAPPY
NLFITFPPHTWSSLQFHSHESFGQSHALGKGDWGKGDWARVTRTQYSPCTTLRDWMSLKE
EEKGDKMSLA

>gi568815591f:120851164_121074841|GENSCAN_predicted_CDS_2|753_bp
atgtcagcaggcacgaaaatcatgcattttttgaaaaatacctttttatcttgcattgaa
aatgcagctcttatgtgggtccaggatttctataggaaaggcatacctatagactctaat
atgattcgagaaaaagcaaagtcattatatgaccacttgaagcaaaaagaaggtgaaaga
tctaaagctggagaatttagtgccagcaaaggatggtttgatgcttttaataaaaatgtc
aagataacagaagcagcttctgctgaccaagaggcaatacatgagtttccagacactatt
aagaaaatgattaaggggaaaatatatctgcctgaagaggttttaatgaagatgaaagtg
tgccctagtctagaaaaaaacatgtcactaaggacgtttattaacccaatgccaagcgtc
actgagtctttccaatcttccttttctacagacccatctgacctctcccctcctccccag
actgctcctcgccaggcagagctaggtcccaattcttcctcagcctccgctccaccctat
aatctttttatcaccttccctcctcacacctggtccagtttacagtttcattcccatgaa
tcctttggtcaatctcatgcactgggcaagggtgactggggcaaaggtgactgggcaagg
gtgactaggacccagtattcaccctgtaccacactcagggactggatgagtctgaaagag
gaagagaaaggtgataagatgtcactggcatga

>gi568815591f:120851164_121074841|GENSCAN_predicted_peptide_3|206_aa
MWEILELPRDLLNGFAQNADSNMDNKVQAEVALDGNGELVGYYSKASAGDTQANRVWSGP
PANSNRPAAEGPERNTININKKDINTKTPSVGHRHQRPKVDKTTKTRRNKSRKAENSKNQ
SASYLPKDCSSSSAMKQSWMENDFDELTEGAFRRSVITNFSELKEDVQTHHKEAKNLEKR
LDKWLTRINSVEKTLNDLMENGMGNT

>gi568815591f:120851164_121074841|GENSCAN_predicted_CDS_3|621_bp
atgtgggaaattttggaacttcctagggacttgttgaatggctttgcccaaaatgctgat
agcaatatggacaataaagtccaggctgaggtggccttggatggaaatggggaacttgtt
gggtactacagcaaagcctccgctggtgatacccaggcaaacagggtctggagtggacct
ccagcaaactccaacagacctgcagctgagggacctgaaaggaataccatcaacatcaac
aaaaaggacatcaacaccaaaaccccatctgtaggtcaccgacatcaaagaccaaaggta
gataaaaccacaaagacaaggagaaacaagagcagaaaagctgaaaattctaaaaaccag
agtgcctcttatcttccaaaggactgcagctcttcgtcagcgatgaaacaaagctggatg
gagaatgactttgacgagttgacagaaggagccttcagaaggtcggtaataacaaacttc
tctgagctaaaggaggatgttcaaacccatcacaaggaagctaaaaaccttgaaaaaaga
ttagataaatggctaactagaataaacagtgtagagaagaccttaaatgacctgatggag
aatggcatgggaaatacgtga

>gi568815591f:120851164_121074841|GENSCAN_predicted_peptide_4|159_aa
MQFKNDKGAITTDPTKIQTTTREYYKHLYANKLENLEEMDKFLDTYTIPRLNQEEAESLN
RPKTGSEIEAIIESLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFY
EASIILIPKPGRDTTKKENFRPISLMNIDAKILNKIPAN

>gi568815591f:120851164_121074841|GENSCAN_predicted_CDS_4|480_bp
atgcaatttaaaaatgataaaggggctatcaccactgatcccacaaaaatacaaactacc
accagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaatggat
aaattcctggacacatacaccatcccaagactaaaccaggaagaagctgaatctctgaat
agaccaaaaacaggttctgaaattgaggcaataattgagagcctaccaaccaaaaaaagt
ccaggaccagatggcttcacagccgaattctaccagaggtacaaggaggaactggtacca
ttccttctgaaactattccaatcaatagaaaaagagggaatcctccctaactcattttat
gaggccagcatcatcctgataccaaagcctggcagagacacaacaaagaaagagaatttt
agaccaatatccctcatgaacatcgatgcaaaaatcctcaataaaataccagcaaactga

>gi568815591f:120851164_121074841|GENSCAN_predicted_peptide_5|494_aa
MHLLSDFTAEESVRNHDGVVHDGAYGLFEIILFGNKIQESTVIEQLPMDLRDRFTEMREM
DLQVQNAMDQLEQRVSEFFMNAKKNKPEWREEQMASIKKDYYKALEDADEKVQLANQIYD
LVDRHLRKLDQELAKFKMELEADNAGITEILERRSLELDTPSQPVNNHHAHSHTPVEKRK
YNPTSHHTTTDHIPEKKFKSEALLSTLTSDASKENTLGCRNNNSTASSNNAYNVNSSQPL
GSYNIGSLSSGTGAGAITMAAAQAVQATAQMKEGRRTSSLKASYEAFKNNDFQLGKEFSM
ARETVGYSSSSALMTTLTQNASSSAADSRSGRKSKNNNKSSSQQSSSSSSSSSLSSCSSS
STVVQEISQQTTVVPESDSNSQVDWTYDPNEPRYCICNQGPSEAELVMVCRPVFPCRRRF
CPRPFLVGLVVAICLFYQTLTLRGSRKLTAAAPGAVPHTSTETQASRCKKGFSQDKQCFL
LSGNAQETRKTTAL

>gi568815591f:120851164_121074841|GENSCAN_predicted_CDS_5|1485_bp
atgcaccttttatctgactttactgcagaagaaagtgtcaggaatcatgatggagtagtc
catgacggagcctatggcttatttgaaattatactattcggcaataaaatccaagagagt
acagtgattgagcagcttcctatggatctgcgggaccgcttcacggaaatgcgcgagatg
gacctgcaggtgcagaatgcaatggatcaactagaacaaagagtcagtgaattctttatg
aatgcaaagaaaaataaacctgagtggagggaagagcaaatggcatccatcaaaaaagac
tactataaagctttggaagatgcagatgagaaggttcagttggcaaaccagatatatgac
ttggtagatcgacacttgagaaagctggatcaggaactggctaagtttaaaatggagctg
gaagctgataatgctggaattacagaaatattagagaggcgatctttggaattagacact
ccttcacagccagtgaacaatcaccatgctcattcacatactccagtggaaaaaaggaaa
tataatccaacttctcaccatacgacaacagatcatattcctgaaaagaaatttaaatct
gaagctcttctatccacccttacgtcagatgcctctaaggaaaatacactaggttgtcga
aataataattccacagcctcttctaacaatgcctacaatgtgaattcctcccaacctctg
ggatcctataacattggctcgttatcttcaggaactggtgcaggggcaattaccatggca
gctgctcaagcagttcaggctacagctcagatgaaggagggacgaagaacatcaagttta
aaagccagttatgaagcatttaagaataatgactttcagttgggaaaagaattttcaatg
gccagggaaacagttggctattcatcatcttcggcacttatgacaacattaacacagaat
gccagttcatcagcagccgactcacggagtggtcgaaagagcaaaaacaacaacaagtct
tcaagccagcagtcatcatcttcctcctcctcttcttccttatcatcgtgttcttcatca
tcaactgttgtacaagaaatctctcaacaaacaactgtagtgccagaatctgattcaaat
agtcaggttgattggacttacgacccaaatgaacctcgatactgcatttgtaatcagggg
ccaagtgaagctgaactggtcatggtctgtcgcccagtgttcccttgtcgtcggcgattt
tgcccccgacccttcttggtgggcttagtggtggcaatctgtctcttctaccagactctg
accctccgagggtcgaggaagctcacagccgctgcccctggggctgtcccacacacatcc
actgaaacccaggcaagcagatgcaagaaaggattctctcaggacaaacagtgcttcctt
ctctctggtaatgcccaggaaaccagaaagactactgccctgtga

>gi568815591f:120851164_121074841|GENSCAN_predicted_peptide_6|59_aa
MLAWGVGDNISIFRVIEEEEEEEGGGGGGGGEEGGGEGGGEGEEEEEEEEEEEEEEEEE

>gi568815591f:120851164_121074841|GENSCAN_predicted_CDS_6|180_bp
atgttagcctggggagttggtgataatatatccatattcagagttattgaagaagaagaa
gaagaagaaggaggaggaggaggaggaggaggagaagaaggaggaggagaaggaggagga
gaaggagaagaagaagaagaggaagaagaagaagaagaagaagaagaggaagaagaataa

>gi568815591f:120851164_121074841|GENSCAN_predicted_peptide_7|219_aa
MSKIWPLEQVFETKWRRVTGDEEVKESMETHFGSHGRRAILYRPPFYSKTELQLHQHILT
QHGYTVVIAEERLNAGLGPGLLEQGDLGSWDLLICLSSKKAEGTPCISKEVMCQLGLHQK
DAQEEGHEGTIKEEPKRRLAQLSAKPAPAKVEAKLKKAAAKDKSSGKNVQTKGKRRAKGK
QAKVANQETKEDLPAENGEMKTEESPASDEAGEKETKSD

>gi568815591f:120851164_121074841|GENSCAN_predicted_CDS_7|660_bp
atgtctaagatatggccattggagcaggtgtttgaaacgaagtggaggagagtcactgga
gatgaagaggtcaaagaatcaatggagacacactttggcagccatggccgaagggccata
ctctacaggcctcctttctacagcaaaacagagcttcagctacaccagcacattctgact
caacatggctatacggttgtcatcgctgaagaaaggctcaatgctggcctagggccgggg
ctactagaacaaggtgatctgggctcttgggatctgctcatttgcctgtcttctaagaaa
gcagaaggaacaccctgtatatccaaggaagtcatgtgccagttaggtttacatcaaaag
gatgcccaagaagaaggtcatgaagggaccatcaaggaagagcccaagaggagattggcg
cagttgtcagctaaacctgctcctgcaaaagtggaagcgaagctgaaaaaggcagcagcg
aaggataaatcttcaggcaaaaatgtgcaaacaaaagggaaaaggagagcaaagggaaaa
caggccaaagtggcaaaccaagaaactaaagaagatttacctgcagaaaacggggaaatg
aaaactgaggagagtccagcctctgatgaagcaggagagaaagaaaccaagtctgattaa

>gi568815591f:120851164_121074841|GENSCAN_predicted_peptide_8|216_aa
MGKDFLSKTPKAMATKAKIDKWDLIKLKSFCTAKETTIRVNRRPTEWEKIFAIYLSDKRL
TSRIYKELKQIYKKKTNNPIEKWAKDMNRHFSKEDIYAAKTHMKKCSSSLAIREMQIKTT
MRYHLTPVRMAIIKKSGNNRSEAADLRGVKLQIFAVSVTAHKGSVDPKSEQQQDLLQSAK
EQSFHNVKRDRSGLPLLAGTACFYSLIWPHPHPADW

>gi568815591f:120851164_121074841|GENSCAN_predicted_CDS_8|651_bp
atgggcaaggacttcttgtctaaaacaccaaaagcaatggcaacaaaagccaaaattgac
aaatgggatctaattaaactaaagagcttctgtacagcaaaagaaactaccatcagagtg
aacaggcgacctacagaatgggagaaaatttttgcaatctacttatctgacaaaaggcta
acatccagaatctacaaagaactcaaacaaatttacaagaaaaaaacaaacaaccccatc
gaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaa
acacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccaca
atgagataccatctcacaccagttagaatggccatcattaaaaagtcaggaaacaacagg
agtgaagctgcagaccttcgcggagtgaagctgcagatcttcgcagtgagtgttacagct
cataaaggcagtgtggacccaaagagtgagcagcagcaagatttattgcaaagcgcaaaa
gaacaaagcttccacaacgtgaaaagggaccggagcgggttgccactgctggctgggaca
gcctgcttttattctcttatctggccccacccacatcctgctgattggtag

>gi568815591f:120851164_121074841|GENSCAN_predicted_peptide_9|90_aa
MPTGSNVIQEKAKSLYDNLKQKKGKGSKASKSGGNRIFKAHYTQYSLERIVRAMEESSNR
ENIMKIWKDYTTEDATVAIEKAMKTISPKE

>gi568815591f:120851164_121074841|GENSCAN_predicted_CDS_9|273_bp
atgcctacaggctctaatgtgattcaagagaaagcaaagtcattatatgacaacttaaag
caaaagaaaggtaaaggatctaaagcctctaaatcagggggtaataggatctttaaggct
cattatacacagtactctttggaaaggattgtcagagctatggaagagagctccaacaga
gagaacatcatgaaaatctggaaggattacaccactgaagatgccactgttgctatagaa
aaagccatgaaaaccatcagcccaaaagaataa