GENSCAN 1.0	Date run:  4-Nov-116	Time: 07:02:06

Sequence gi568815589r:38311403_38524358 : 212956 bp : 44.97% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   4452   4532   81  0  0   54   56   136 0.027   5.75
 1.02 Intr +  19365  19431   67  0  1   63   84    40 0.010   0.01
 1.03 Intr +  37239  37268   30  2  0  101   83    46 0.396   3.73
 1.04 Intr +  40544  40625   82  1  1   87   74    50 0.700   2.71
 1.05 Term +  41632  41798  167  2  2   71   52    58 0.034  -1.42
 1.06 PlyA +  42023  42028    6                               1.05

 2.07 PlyA -  42283  42278    6                               1.05
 2.06 Term -  43530  43433   98  1  2   84   42   238 0.093  16.93
 2.05 Intr -  52071  52015   57  1  0   92   82    17 0.094   0.36
 2.04 Intr -  61567  61508   60  2  0   97   87    55 0.707   5.01
 2.03 Intr -  67432  67348   85  1  1   24  113    66 0.011   2.09
 2.02 Intr -  74404  74273  132  1  0   62   77    71 0.056   4.24
 2.01 Init -  81558  81415  144  0  0   55   18   114 0.066   1.22
 2.00 Prom -  83660  83621   40                               0.24

 3.00 Prom +  84070  84109   40                              -9.95
 3.01 Sngl +  84347  85900 1554  1  0   82   48  2328 0.937 221.58
 3.02 PlyA +  86032  86037    6                               1.05

 4.09 PlyA -  87600  87595    6                               1.05
 4.08 Term - 100147  99998  150  1  0  106   45   136 0.963   9.01
 4.07 Intr - 101951 101835  117  2  0  121   97    91 0.999  13.96
 4.06 Intr - 102801 102692  110  1  2   99   63   112 0.780   9.80
 4.05 Intr - 103676 103604   73  2  1   15   94    51 0.154  -2.62
 4.04 Intr - 107778 107697   82  2  1  105   75    10 0.917   1.04
 4.03 Intr - 108529 108416  114  0  0   64   61   179 0.970  12.36
 4.02 Intr - 111092 111020   73  0  1   75   92    15 0.973  -0.94
 4.01 Init - 113022 112563  460  0  1   83  109   728 0.995  68.32
 4.00 Prom - 114234 114195   40                              -5.16

 5.04 PlyA - 118418 118413    6                               1.05
 5.03 Term - 121073 120886  188  0  2   64   50   145 0.404   5.95
 5.02 Intr - 126953 126860   94  2  1  100   72     8 0.185  -0.06
 5.01 Init - 128357 128301   57  2  0   75  121    19 0.229   5.21
 5.00 Prom - 138456 138417   40                              -4.26

 6.00 Prom + 139647 139686   40                              -5.36
 6.01 Init + 142418 142428   11  1  2  117   43    18 0.030  -0.92
 6.02 Intr + 144716 144791   76  2  1   91   89    57 0.031   5.62
 6.03 Intr + 147806 147903   98  1  2   13   94    28 0.030  -5.29
 6.04 Intr + 150701 150831  131  2  2  132   79   160 0.944  19.84
 6.05 Intr + 158445 158563  119  1  2   76   99    96 0.903   9.68
 6.06 Intr + 163025 163138  114  1  0   78  115     7 0.297   3.04
 6.07 Intr + 167045 167367  323  1  2  -26    4   260 0.264   0.86
 6.08 Term + 167450 167948  499  2  1    4   50   288 0.440  10.60
 6.09 PlyA + 170026 170031    6                               1.05

 7.03 PlyA - 170418 170413    6                               1.05
 7.02 Term - 176894 176479  416  0  2    9   43   406 0.465  23.62
 7.01 Init - 193736 193514  223  2  1   76   32   116 0.047   3.76
 7.00 Prom - 199363 199324   40                              -2.06

 8.04 PlyA - 201363 201358    6                               1.05
 8.03 Term - 207343 207216  128  2  2   53   48   104 0.847   1.34
 8.02 Intr - 207690 207610   81  1  0   60   57    66 0.478   0.31
 8.01 Intr - 212013 211950   64  0  1  116   91     5 0.663   1.89

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  43380  43516  137  1  2    7   50   276 0.878  13.88
S.002 Init -  62948  62798  151  2  1   58   69    83 0.818   3.60


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:38311403_38524358|GENSCAN_predicted_peptide_1|142_aa
XSSANHQAASQRAGPYSSLDFRDPIGIVIKKNDYKYPDKEKRKEKDFYEGVIGKQVVFGY
SCPQGWAVSCHVLEAELTLLATGDGTRREFEVTNLEMLAADVFLLLRRLLVLWKRITNPE
TMLTCTTSGVPAVRPAAHAPPL

>gi568815589r:38311403_38524358|GENSCAN_predicted_CDS_1|429_bp
nngtccagtgccaaccaccaggctgccagtcaacgagcaggtccctactcctctctggac
ttccgtgaccccatcggaatagtgataaagaaaaatgattataaatatccagataaggaa
aaaagaaaagaaaaggatttctatgaaggggttattgggaaacaggtggtgttcggttac
tcctgcccacaaggatgggctgtcagctgccatgtgttagaagctgagctgaccctcttg
gctacaggtgatggcaccagaagggagtttgaagtcacaaacctggagatgttggcagca
gatgttttcttactcctccgcaggctgctggtattgtggaaaaggataacaaacccagag
acaatgcttacctgcaccacctctggtgtgcctgctgtgagacctgcagcacacgcgcca
cccctctga

>gi568815589r:38311403_38524358|GENSCAN_predicted_peptide_2|191_aa
MGLGDVERVLQCNGGKASPQMRTPRPREESPHAEPGAAASRGSRGETSTGEADRHGDWHV
SLTQCEKENPESGAKRAEKQEMGQNNYTKPGKHMVDVAVVCPELVGSLLTDFKNEAVDPH
DRREDLLINVCTSASEEKQGYPPSDPASVLSPPHHEAAAVPKVISEQQQQQQQQQQQQQQ
QTSFEGPKKQA

>gi568815589r:38311403_38524358|GENSCAN_predicted_CDS_2|576_bp
atgggattaggggacgtggagagagtcctacagtgcaacggcggaaaggccagcccccag
atgcggacgccgcggcccagagaggaaagcccccacgcggagccaggagctgcggcttcc
cgagggagccgaggggagaccagcactggggaggcagacagacatggagactggcatgtt
tccctcacacagtgtgagaaagagaacccagagagtggtgccaagagagcagagaaacag
gaaatgggacaaaacaactacacaaagcctgggaagcatatggtagatgtagcggtggtg
tgcccggaattggtgggttctttgctcactgacttcaagaatgaagccgtggaccctcac
gaccgccgtgaagatttactaataaatgtctgcacatcagccagtgaagagaagcagggc
tacccacccagtgatcctgcctctgtcctctcacccccgcatcatgaagcagctgccgtc
ccaaaggtcatctcagagcagcagcagcagcagcagcagcagcagcagcagcagcagcag
cagacaagctttgaggggcccaaaaagcaggcctag

>gi568815589r:38311403_38524358|GENSCAN_predicted_peptide_3|517_aa
MLRFLAPRLLSLQGRTARYSSAAALPSPILNPDIPYNQLFINNEWQDAVSKKTFPTVNPT
TGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLA
SLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPVGVCG
QIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITG
YGPTAGAAIAQHVDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADM
EHAVEQCHEALFFNMGQCCCAGSRTFVEESIYNEFLERTVEKAKQRKVGNPFELDTQQGP
QVDKEQFERVLGYIQLGQKEGAKLLCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGP
VQPLFKFKKIEEVVERANNTRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNIVTCHT
PFGGFKESGNGRELGEDGLKAYTEVKTVTIKVPQKNS

>gi568815589r:38311403_38524358|GENSCAN_predicted_CDS_3|1554_bp
atgctgcgcttcctggcaccccggctgcttagcctccagggcaggaccgcccgctactcc
tcggcagcagccctcccaagccccattctgaacccagacatcccctacaaccagctgttc
atcaacaatgaatggcaagatgcagtcagcaagaagaccttcccgacggtcaaccctacc
accggggaggtcattgggcacgtggctgaaggtgaccgggctgatgtggatcgggccgtg
aaagcagcccgggaagccttccgcctggggtccccatggcgccggatggatgcctctgag
cggggccggctgctgaaccgcctggcagacctagtggagcgggatcgagtctacttggcc
tcactcgagaccttggacaatgggaagcctttccaagagtcttacgccttggacttggat
gaggtcatcaaggtgtatcggtactttgctggctgggctgacaagtggcatggcaagacc
atccccatggatggccagcatttctgcttcacccggcatgagcccgttggtgtctgtggc
cagatcatcccgtggaacttccccttggtcatgcagggttggaaacttgccccggcactc
gccacaggcaacactgtggttatgaaggtggcagagcagacccccctctctgccctgtat
ttggcctccctcatcaaggaggcaggctttccccctggggtggtgaacatcatcacgggg
tatggcccaacagcaggtgcggccatcgcccagcacgtggatgttgacaaagttgccttc
accggttccaccgaggtgggccacctgatccagaaagcagctggcgattccaacctcaag
agagtcaccctggagctgggtggtaagagccccagcatcgtgctggccgatgctgacatg
gagcatgccgtggagcagtgccacgaagccctgttcttcaacatgggccagtgctgctgt
gctggctcccggaccttcgtggaagaatccatctacaatgagtttctcgagagaaccgtg
gagaaagcaaagcagaggaaagtggggaacccctttgagctggacacccagcaggggcct
caggtggacaaggagcagtttgaacgagtcctaggctacatccagcttggccagaaggag
ggcgcaaaactcctctgtggcggagagcgtttcggggagcgtggtttcttcatcaagcct
actgtctttggtggcgtgcaggatgacatgagaattgccaaagaggagatctttgggcct
gtgcagcccctgttcaagttcaagaagattgaggaggtggttgagagggccaacaacacc
aggtatggcctggctgcggctgtgttcacccgggatctggacaaggccatgtacttcacc
caggcactccaggccgggaccgtgtgggtaaacacctacaacatcgtcacctgccacacg
ccatttggagggtttaaggaatctggaaacgggagggagctgggtgaggatgggcttaag
gcctacacagaggtaaagacggtcaccatcaaggttcctcagaagaactcgtaa

>gi568815589r:38311403_38524358|GENSCAN_predicted_peptide_4|392_aa
MPRLSLLLPLLLLLLLPLLPPLSPSLGIRDVGGRRPKCGPCRPEGCPAPAPCPAPGISAL
DECGCCARCLGAEGASCGGRAGGRCGPGLVCASQAAGAAPEGTGLCVCAQRGTVCGSDGR
SYPSVCALRLRARHTPRAHPGHLHKARDGPCEFVPITRFYNCFPQPLIHRQFSLSPDRRQ
SETLSKKKKKKEEEEEEEEEGEEEKEEEGCKSNFQHTINFKEISEGFGKIFSFQPSMIDI
IDEASTLHVAQHAVVLDARVAELLSNAAPVVVVPPRSVHNVTGAQVGLSCEVRAVPTPVI
TWRKVTKSPEGTQALEELPGDHVNIAVQVRGGPSDHEATAWILINPLRKEDEGVYQCHAA
NMVGEAESHSTVTVLDLSKYRSFHFPAPDDRM

>gi568815589r:38311403_38524358|GENSCAN_predicted_CDS_4|1179_bp
atgccgcgcttgtctctgctcttgccgctgctgcttctgctgctgctgccgctgctgccg
ccgctgtccccgagccttgggatccgcgacgtgggcggccggcgccccaagtgtggtccg
tgccggccagagggctgcccggcgcctgcgccctgcccggcgcccgggatctcggcgctc
gacgagtgcggctgctgcgcccgctgcctgggagccgagggcgcgagctgcgggggccgc
gccggcgggcgctgtggccccggcctggtatgcgcgagccaggccgctggggcagcgccc
gagggcaccgggctctgcgtgtgcgcgcagcgcggcaccgtctgcggctccgacggtcgc
tcgtaccccagcgtctgcgcgctgcgcctgcgcgctcggcacacgccccgcgcgcacccc
ggtcacctgcacaaggcgcgcgacggcccttgcgagttcgttcctatcactcgtttttat
aactgctttcctcagccgttaattcacaggcaattctctttgtctccagacaggagacag
agtgagaccctgtctaaaaagaagaagaagaaggaggaggaggaggaggaggaggaggag
ggggaggaggagaaggaagaagaaggatgcaaaagcaatttccaacacaccattaacttt
aaagaaatctcagagggatttgggaagattttttcattccagccatcaatgatcgatata
attgacgaggcctctacactgcacgttgcccaacacgctgtggtgctggatgccagggtg
gctgagttgctgtccaatgcagctcctgtggtcgtcgttcctccccgaagtgttcacaac
gtcaccggggcgcaggtgggcctgtcctgtgaagtgagggctgtgcctaccccagtcatc
acgtggagaaaggtcacgaagtcccctgagggcacccaagcactggaggagctgcctggg
gaccatgtcaatatagctgtccaagtgcgagggggcccttctgaccatgaggccacggcc
tggattttgatcaaccccctgcgaaaggaggatgagggtgtgtaccagtgccatgcagcc
aacatggtgggagaggctgagtcccacagcacagtgacggttctagatctgagtaaatac
aggagcttccacttcccagctcccgatgaccgcatgtga

>gi568815589r:38311403_38524358|GENSCAN_predicted_peptide_5|112_aa
MVLTSKEHQGSKGHSWHQKFKTDIVTPEVMVGFFVIFWSRLSVLGSKTFEVVTFIELKLL
PYPPYLGHLLEHTEHGFLSYSPVSSTGQVYSEPSESLLDEEQMSQCISESTD

>gi568815589r:38311403_38524358|GENSCAN_predicted_CDS_5|339_bp
atggtgctgacttcaaaggaacatcaagggtccaaggggcacagctggcaccaaaagttc
aaaacagatattgtgacgccagaagtgatggttggattttttgttatattttggagtagg
ctttcagttcttggatctaaaacatttgaagtagtaacattcattgagctgaaattgctt
ccctatccaccctacctgggccaccttcttgagcacacagagcatggcttcctcagctac
tccccagtgtccagcacaggccaggtgtacagcgagccttctgagagcttgctggatgaa
gaacaaatgagtcaatgcatcagtgaatctacagattag

>gi568815589r:38311403_38524358|GENSCAN_predicted_peptide_6|456_aa
MAMRTRQLNGTCTSSVDMELFLHYSLIPSAQAVDMLRSQPRALEKRESTDVRTEARGDLS
CRPLDFVGTFSNRWSYGITFGATANKVMFLFSEGYQPLQIPQWAQAFELLIGGIEVGLSH
FPFFACLSSEFQLVSSILGFCYSDLTAWAVPCIPSSGEMMVGFHICVASPALEITLSPCI
SHQARRRPAGATEDEVARSAKKMDEIVQEKNTAGALGLLTELQNVLELLRSTGTGMLLNV
SLKQSTDEEVTSLAKSFVKSWKTLPDEPSTEKDPNEKRIEPAMTSQNSKRNASNSVRMKY
REMLAAALRTGDDCIEMGADEEELGSRIEEAVDPERGNTGMKYKNRVQSKISNLTDAKNP
NLRKNASCGNIPPDLLARMSAEEMASDELKEMHKNLTKEAIREHQMAKTGGTQPDSLTCG
KCKKNCTSTQVQACSVGEPMATFVDCNECGNQQKFC

>gi568815589r:38311403_38524358|GENSCAN_predicted_CDS_6|1371_bp
atggcgatgaggaccaggcagttaaatggcacttgtaccagctcggtggacatggagctc
ttccttcattattccctcatcccatcagctcaagctgtggacatgctgaggtctcagcca
agggctctggagaagagagaaagcacagatgtcagaactgaggcaaggggtgacctgagc
tgcaggcctctggacttcgtgggcactttcagtaaccgatggtcctatggaatcaccttt
ggggccacagctaataaggtcatgtttttgttctcagaaggctaccagcccctgcagatc
ccgcagtgggcccaagcctttgagcttctgattggaggcattgaagtcggcctgtcccac
ttccccttctttgcctgcctctcgtcggaattccagctggtcagctccatcttgggcttc
tgctactctgatctgacagcatgggctgtaccgtgcattccctcctctggagaaatgatg
gtaggtttccacatctgtgtagcatctcccgctctggagatcaccctgagcccttgcatc
tcccaccaggcacggaggagacctgccggagccacggaggatgaggtggcccgcagtgct
aagaagatggacgagatagtgcaggagaagaacacggccggagcactgggtttgttaacc
gagcttcagaatgttctggaattactgcggtccacaggaactggaatgttacttaatgtt
agtctcaagcagagtacagatgaagaagttacatctctagcaaagtctttcgtcaaatcc
tggaaaacgttaccagatgagccatcaactgagaaagaccccaacgaaaagcgaatagaa
cctgcaatgacatcacagaatagcaaaagaaacgcttctaattctgtgcggatgaagtac
agggagatgcttgctgcagctcttcgaacaggagatgactgcattgaaatgggagctgat
gaggaagaattaggatctcgaattgaggaagctgtagatccagaaagagggaatacaggc
atgaagtacaaaaatagagtccaaagtaagatatcaaatcttacagatgcaaagaatcca
aatttaaggaaaaatgcatcgtgtgggaatattcctcctgacttacttgctagaatgtcc
gcagaagaaatggctagcgatgagctcaaagagatgcacaaaaacttgacgaaagaagcc
atcagagagcatcagatggccaagacaggtggaacccagcctgattcgctcacatgtggc
aaatgtaaaaagaattgcacttccacacaggtacaagcctgcagtgttggtgaaccaatg
gcaacgtttgttgactgtaatgaatgtggaaatcaacagaagttctgttga

>gi568815589r:38311403_38524358|GENSCAN_predicted_peptide_7|212_aa
MPPKHGAGPLWEPQQIQVGVAERQNAQNTTMLLLKLWVINSLIYVRLVPFVDTIKYGSVT
KNLSIKMCLATPHMGWLALRFFVARDSAATFIGQWRTDLGEPEMLRELARETLGLCTRSA
PQDKGLGGEVPRGRLRPVDLCEGAREPPDGAPGCGDPLERYLDSQDPRRRSSTTHRPPPS
RVRTLSPQRVSPTPSPCPGSLVPARERRRSGP

>gi568815589r:38311403_38524358|GENSCAN_predicted_CDS_7|639_bp
atgcctcctaagcatggtgcaggccctctgtgggagccccagcaaatccaggtgggcgtg
gctgaaagacaaaatgctcaaaacaccactatgcttcttcttaaactctgggtcatcaac
agtctcatctacgtcaggcttgtgccgtttgttgacactatcaaatatggcagtgtcacc
aagaatctctccataaaaatgtgtttagctacaccacacatggggtggctggcgctgcgc
ttcttcgtggcccgcgacagtgcggccaccttcatcggccagtggcgcactgatctgggc
gagcccgaaatgctccgcgagctggcgagggagacactgggcctctgcacccggtcagct
ccccaagataaaggcctcggaggggaagttccgcgtgggagactccggcctgttgatctc
tgtgagggtgcccgggagccgcctgacggcgcgcctgggtgtggcgacccgctggagcgc
tacctggacagtcaggacccgcgccgccgctcctccaccacccaccgcccgcccccgtcg
agggtccgcaccctgtccccgcagagggtgtcgcccacccctagcccctgccctggtagc
ctggtccccgcgagagagcgccggcgctccggaccctag

>gi568815589r:38311403_38524358|GENSCAN_predicted_peptide_8|90_aa
APALKGSVCVRRRLQNSRLPFGRTLEFQLFHVISSVLGSQAFISAFLVVILDLLERTALG
SPENSVMSAVNIFVSPGVCGIVSLNIWAKF

>gi568815589r:38311403_38524358|GENSCAN_predicted_CDS_8|273_bp
gcccctgctctcaaaggctctgtgtgtgtgaggaggcggctgcagaacagcagacttccc
tttggcaggactttagagttccagttgttccacgtcatctccagcgtgctgggttctcag
gccttcatctcagcctttctagtggtcattttggatctgctggagaggactgccctgggc
tccccagagaattcagttatgtcggcagtgaacatttttgtatctcctggtgtttgtggc
attgtcagtctcaacatctgggccaaattttga