GENSCAN 1.0	Date run:  4-Nov-116	Time: 07:01:36

Sequence gi568815597r:54039523_54252922 : 213400 bp : 47.48% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    635    630    6                               1.05
 1.02 Term -   6264   6181   84  0  0  100   53    67 0.831   2.05
 1.01 Init -  13666  13478  189  1  0   90   97   237 0.993  21.81
 1.00 Prom -  23363  23324   40                              -2.56

 2.00 Prom +  28265  28304   40                              -4.16
 2.01 Init +  43215  43224   10  2  1  105   94     0 0.811   3.05
 2.02 Intr +  49075  49268  194  2  2  113   90   151 0.993  17.01
 2.03 Term +  56763  56951  189  2  0   86   43   174 0.879  10.15
 2.04 PlyA +  60729  60734    6                               1.05

 3.06 PlyA -  62124  62119    6                               1.05
 3.05 Term -  72156  72046  111  0  0   67   42   148 0.897   6.66
 3.04 Intr -  81474  81315  160  2  1  110   72    25 0.146   3.09
 3.03 Intr -  82662  82574   89  0  2   81   81    17 0.149  -0.93
 3.02 Intr -  82947  82780  168  0  0   65   64   128 0.932   8.24
 3.01 Init -  91840  91673  168  1  0   71   38    65 0.237  -0.67
 3.00 Prom -  92381  92342   40                              -0.26

 4.07 PlyA -  92652  92647    6                              -1.75
 4.06 Term -  93829  93446  384  1  0   23   42   552 0.597  38.99
 4.05 Intr -  97286  97108  179  0  2   63   91   345 0.998  31.94
 4.04 Intr - 100584 100231  354  1  0   91   60   638 0.981  56.56
 4.03 Intr - 101911 101576  336  2  0   26   91   536 0.513  43.19
 4.02 Intr - 105291 104944  348  1  0   99   42   502 0.957  42.03
 4.01 Init - 113400 113322   79  0  1   66  102   187 0.998  17.12
 4.00 Prom - 116418 116379   40                              -7.66

 5.13 PlyA - 119225 119220    6                               1.05
 5.12 Term - 120422 120321  102  2  0   84   49    34 0.009  -2.62
 5.11 Intr - 121929 121822  108  0  0  114   48    42 0.025   3.28
 5.10 Intr - 124071 123951  121  2  1   63   70    67 0.032   2.90
 5.09 Intr - 135300 135146  155  0  2  111   49    75 0.489   4.77
 5.08 Intr - 139830 139627  204  0  0   83   99   203 0.975  20.30
 5.07 Intr - 144743 144639  105  2  0  129   82    38 0.887   7.71
 5.06 Intr - 148217 148130   88  1  1  119  113    81 0.846  13.67
 5.05 Intr - 151374 151226  149  0  2  111   38   205 0.638  16.83
 5.04 Intr - 151889 151813   77  0  2   56   71    25 0.570  -3.17
 5.03 Intr - 152346 152169  178  0  1   48   28   141 0.353   3.59
 5.02 Intr - 156112 155897  216  1  0   51   94   152 0.198  10.80
 5.01 Init - 159314 159312    3  2  0  108   81     0 0.222   1.30
 5.00 Prom - 159628 159589   40                              -5.56

 6.00 Prom + 159667 159706   40                             -10.64
 6.01 Init + 160722 161067  346  2  1   49   72   416 0.999  31.48
 6.02 Intr + 165496 165679  184  2  1   48  119    84 0.991   6.35
 6.03 Intr + 165773 165888  116  2  2   67   73    94 0.973   5.89
 6.04 Intr + 170424 170609  186  1  0   66  110   158 0.576  15.46
 6.05 Intr + 172979 173136  158  0  2  114   63   197 0.999  19.53
 6.06 Intr + 176619 176822  204  2  0  116  103   158 0.983  19.50
 6.07 Intr + 181089 181224  136  2  1   70   55    23 0.228  -2.66
 6.08 Intr + 181498 181639  142  2  1   81   44    68 0.479   1.11
 6.09 Intr + 182344 182459  116  1  2   67   80    80 0.547   5.19
 6.10 Intr + 183122 183223  102  0  0   96   80    44 0.533   4.55
 6.11 Term + 184931 185043  113  0  2   67   40    49 0.232  -3.28
 6.12 PlyA + 185606 185611    6                               1.05

 7.12 PlyA - 187019 187014    6                               1.05
 7.11 Term - 187764 187744   21  0  0  100   52    22 0.440  -1.89
 7.10 Intr - 188834 188733  102  2  0  130   75    66 0.993   9.87
 7.09 Intr - 188955 188927   29  1  2   89   87     2 0.107  -1.97
 7.08 Intr - 189304 189226   79  1  1   82   95    34 0.014   2.62
 7.07 Intr - 199677 199607   71  1  2   83  111    74 0.989   8.10
 7.06 Intr - 201437 201383   55  2  1   79  110    44 0.789   4.25
 7.05 Intr - 201987 201952   36  0  0   86  103    11 0.483   0.86
 7.04 Intr - 204154 204092   63  1  0  111   87    -8 0.504   0.31
 7.03 Intr - 208804 208724   81  1  0  119   80     1 0.647   2.23
 7.02 Intr - 212170 212094   77  2  2  121   91     6 0.648   3.43
 7.01 Init - 212734 212614  121  1  1  102   54    26 0.379   0.96

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:54039523_54252922|GENSCAN_predicted_peptide_1|90_aa
MAAPKGSLWVRTQLGLPPLLLLTMALAGGSGTASAEAFDSVLGDTASCHRACQLTYPLHT
YPKHVQKHIPNLMSNMLAILVARISCHSLN

>gi568815597r:54039523_54252922|GENSCAN_predicted_CDS_1|273_bp
atggcggcgccgaaggggagcctctgggtgaggacccaactggggctcccgccgctgctg
ctgctgaccatggccttggccggaggttcggggaccgcttcggctgaagcatttgactcg
gtcttgggtgatacggcgtcttgccaccgggcctgtcagttgacctaccccttgcacacc
taccctaagcatgtacagaagcatattcccaatctgatgagcaatatgcttgccatcttg
gttgccagaatcagctgccattcgctgaactga

>gi568815597r:54039523_54252922|GENSCAN_predicted_peptide_2|130_aa
MVTGHTVNKMRKHSDSEVASLAREVYTEWKTFTEKHSNRPSIEVRSDPKTESLRKNAQKL
LSEALELKMDHLLVENIERETFHLCSRLINGPYRRTVRALVFTLKHRAEIRAQVKSGSLP
VGTFVQTHKK

>gi568815597r:54039523_54252922|GENSCAN_predicted_CDS_2|393_bp
atggtgacaggtcacactgtgaacaagatgcgtaaacactcagattcagaagtggcttct
cttgccagagaagtttacactgagtggaaaactttcactgaaaaacattcaaatagacct
tctattgaagttagaagtgatcccaaaaccgagtcgttgaggaaaaatgctcagaaatta
ctctcagaagccttggaattaaagatggatcacctactggttgaaaatattgaacgggaa
acgtttcatctctgctcccgcctcattaatgggccgtaccggcggacggtgagagccctg
gtcttcacattaaagcaccgagctgaaatccgggctcaggtgaagagcggctcgctgcca
gtcggcacgtttgtacagacccacaaaaagtga

>gi568815597r:54039523_54252922|GENSCAN_predicted_peptide_3|231_aa
MLPTGIKLKKLWPNYNSLNNPTSIHWIPDFVSVAVAEAPGTQQHTRQMRFLPARRLFSFK
AERDAGRGDPAGVRCPDRTCSSEQPELKFVSRVSVCPLLAFPGVPSYVAGAQSCEGHGRG
SGKGEFKGKVEPQQSGAPDSPRSLIQLCPPTYHHLSSPLLSLSPHCHHQTTQLPPPAMPQ
FRPDHDQATECGALRGCREGYMGELCDGYHHHIFIFIIIKCLGLTREQRGQ

>gi568815597r:54039523_54252922|GENSCAN_predicted_CDS_3|696_bp
atgctgcccactggcatcaagttaaaaaaactatggcccaattacaattcactcaacaac
ccaacaagcatccactggattccagattttgtgtctgttgctgtggcagaggctccaggc
acacagcagcacacacgccagatgagattcctacctgcaaggcgtttgtttagtttcaag
gcagaaagagatgctgggaggggggaccccgctggtgtcagatgtccagaccggacctgc
agctccgagcagcccgagctcaagtttgtgagccgcgtgtccgtgtgtcccctgctggca
ttcccgggcgttccctcctatgtggctggggcacagagctgtgaggggcacggcaggggt
agtgggaagggagagttcaaggggaaggtggagcctcagcaaagcggggcgcctgacagc
ccaaggtctctcatccagctctgtccgcccacgtaccaccatctctccagtccactcctt
tctctctcgccccactgccaccaccagaccacccagctcccgcctccagccatgccccaa
tttcgtccagaccacgaccaagccacggagtgtggtgcactaaggggttgtcgtgagggt
tacatgggagagctgtgtgatggctaccatcatcacatcttcatcttcatcatcatcaag
tgtttaggcctcacccgggagcaacggggccagtaa

>gi568815597r:54039523_54252922|GENSCAN_predicted_peptide_4|559_aa
MLAEWGACLLLAVALLGPGLQAQAMEGVKCGGVLSAPSGNFSSPNFPRLYPYNTECSWLI
VVAEGSSVLLTFHAFDLEYHDTCSFDFLEIYNGASPDKGNLLGRFCGKVPPPPFTSSWHV
MSVIFHSDKHVASHGFSAGYQKDVCGGVLTGLSGVLTSPEYPNNYPNSMECHWVIRAAGP
AHVKLVFVDFQVEGNEECTYDYVAVLGGPGPTRGHHYCGSTRPPTLVSLGHELQVVFKSD
FNIGGRGFKAYYFSGECQEVYMAMRGNFSSPQYPSSYPNNIRCHWTIRLPPGYQVKVFFL
DLDLEEPNSLTKTCDFDHLAAFDGASEEAPLLGNWCGHHLPPPVTSSHNQLLLLLHTDRS
TTRRGFSVAYIGVVPMNVSCSRTDFQILISTQALAPLERTKVYLGSRSCAAQEVGGNLRI
QARFDTCGTESQGNKFSPSSFRCDEYPVTPQRRNNTSVIVSVLYIDFSAAGREDIHEYEV
RCEPRRKEASVHLLSGSHWLGPYAATAEHLQEAPPMDEAEALEGPVSMVAQDTSDIVFLG
LCILAGILMVIAIVVLMLL

>gi568815597r:54039523_54252922|GENSCAN_predicted_CDS_4|1680_bp
atgctggcagagtggggggcttgcctgctgctggcagtggcactgctgggcccagggctc
caggcccaagccatggaaggtgtcaaatgtgggggtgtgctctcagcaccttctggaaac
ttctccagccccaacttccctagactgtacccctacaacacagagtgcagctggctgatc
gtggtggccgagggatcctcggtgctgctcaccttccatgcctttgacctagagtaccac
gacacctgcagcttcgactttctggagatctacaatggggcctcaccagacaagggcaac
ctgctggggaggttctgcggcaaggtgcccccgccgcccttcacctcctcctggcatgtc
atgtctgtcatcttccactcggacaagcatgtggccagccatggcttttctgcgggctac
cagaaagatgtgtgtggcggcgtcctgactggcctgtcaggggtcctcaccagtcctgag
tatcccaacaactacccgaacagcatggagtgccactgggtgatccgggccgctggccct
gcccacgtcaagctggtgttcgtggacttccaggtggagggcaatgaagagtgcacctat
gactacgtggctgtgcttggggggcctggccccacccgtgggcaccactactgtggcagc
accaggccccccaccctcgtgtctctgggccacgaactgcaggtggtcttcaagtccgac
ttcaacatcggaggccgtggcttcaaggcctactacttctcaggagaatgccaggaggta
tacatggccatgcggggcaacttctccagcccacagtaccccagctcctaccccaacaac
atccgctgccactggaccatccgcctgcccccgggctaccaggtcaaggtgttcttcctg
gacctggacctggaggagcccaacagcctgaccaagacctgtgactttgaccatctggcg
gccttcgatggggccagcgaggaggcacccctgctggggaattggtgtggacaccacctg
ccaccacccgtgacctcaagccacaaccagcttctgcttctgctgcacacagaccgcagc
accacccgcaggggcttctctgtggcctacatcggagtggtgcccatgaacgtgagctgc
tcccgcacggacttccagatcctgatctccacgcaggcgctggccccgctggagcggacc
aaggtctacctgggcagccggagctgtgccgcccaggaggtcggcggcaacctcaggatc
caggcccgctttgatacctgcggcactgagtctcagggaaacaagttcagcccaagctcc
ttcaggtgtgatgagtaccctgtgaccccacagagaagaaacaacacttcagtgattgtc
agcgtgctgtacatcgacttctcagccgcggggcgggaggacatccatgagtacgaggtc
cgctgtgagccacggcgcaaggaggcttctgtccacctgctgtctggctctcactggctg
gggccctatgctgccactgcggagcaccttcaggaagcaccacccatggatgaggcggag
gcactggagggcccagtgagcatggtggcccaggataccagtgacatcgtcttcctgggc
ctttgcatcctggctggaatcctcatggttattgccatcgtggtcttgatgctgctttga

>gi568815597r:54039523_54252922|GENSCAN_predicted_peptide_5|501_aa
MAAQAPLMMAEREEDDDTEEAWMQLRPTEPLPSQCCGSGCSPCVFDLYHRDLARWEAAQA
SKDRSLLRGPESQSSVLSKAPGSCAREYPGTLADDEEVILDGGCGKGHSGDKALNAKPKN
FCQLSDTVSTTMDIGLDILRSHQLINYANLDFSSFEEWSCPSKLNPETFVAFCIIAMDRL
TKDTYRVRFALPGNSQLGLRPGQHLILRGIVDDLEIQRAYTPISPANAEGYFEVLIKCYQ
MGLMSRYVESWRVGDTAFWRGPFGDFFYKPNQYGELLLLAAGTGLAPMVPILQSITDNEN
DETFVTLVGCFKTFESIYLKTFLQEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHL
GQDLIKELVSCCRRKPFALVCGSAEFTKDIARFSAEFLRTLTRGVHRLLGAADAVKTNVK
GLVLGLLPSRHSDPLPSDSPGGPIWWLRGPALQLDSPGFESWFCHLEDVSPDLCGQGGVR
QHLAITWAPPLDPGTSDRIQI

>gi568815597r:54039523_54252922|GENSCAN_predicted_CDS_5|1506_bp
atggctgcccaagccccactgatgatggctgagagggaagaggacgacgacactgaggaa
gcctggatgcagctacggcccacagaacccttgccttcccagtgctgcggcagtggctgc
tcaccctgtgtgtttgacctctatcaccgagatctggcaaggtgggaggcagcccaagcc
agcaaggacaggagcctgctgcgtgggccagagtcacagtccagtgttctttccaaagca
ccaggcagttgtgccagagagtacccaggtactctggctgatgatgaagaggtcatcctg
gatggtgggtgtgggaaggggcacagtggagacaaggccttgaatgccaagcccaagaat
ttctgtcagctcagtgatactgtcagcactaccatggatattgggttagacattctgagg
tcccatcaacttataaattatgcaaatctggattttagcagctttgaagaatggagctgc
ccctccaagctgaacccagagaccttcgtggccttctgcatcattgccatggacaggctc
actaaggacacctaccgtgtccggtttgctctacccgggaacagccagcttggcctgcgg
cccggccagcacctcatcctacgagggatagtagatgacttagaaattcagagagcctat
acgcccatcagccctgccaacgcagaaggatactttgaagtgttaattaagtgctaccag
atggggctgatgtcccggtatgttgagtcctggagagtaggagacacagctttctggcga
ggacctttcggagatttcttctataaaccaaaccagtatggtgagctcctcttgctggct
gcgggcacgggcctggcccccatggtgcctatcctgcagagcatcacagacaatgagaat
gacgagacttttgtcactctggtcggttgcttcaagacctttgagagcatctacctgaaa
accttcctccaagagcaggcccgtttctggaatgtccgtaccttctttgtactcagccag
gagagctcctcagagcagcttccctggagttaccaagagaaaacccactttggccacctg
ggccaggacctaattaaagagctggtcagctgctgtcggagaaagccattcgcactggtc
tgtggctcggctgagttcaccaaagacatagccaggttttctgctgagttcctgaggacc
ctgactcgaggagtccaccgtctcctgggggctgcagatgctgtcaaaacaaatgtgaaa
ggtctggtgctcggcctgctacccagtagacactcagaccctcttccatccgactcccct
ggcggcccgatctggtggctcagaggaccagcattgcagctggacagtcccggatttgaa
tcctggttctgccacttagaggatgtcagcccagacctctgtggacaaggaggtgttagg
cagcaccttgctatcacctgggcaccacccctggacccgggaaccagtgacaggatacag
atatga

>gi568815597r:54039523_54252922|GENSCAN_predicted_peptide_6|600_aa
MALASGPARRALAGSGQLGLGGFGAPRRGAYEWGVRSTRKSEPPPLDRVYEIPGLEPITF
AGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYKDQACYIFHHRCRLLEGVKQA
LWLTKTKLIEGLPEKVLSLVDDPRNHIENQDECVLNVISHARLWQTTEEIPKRETYCPVI
VDNLIQLCKSQILKHPSLARRICVQNSTFSATWNRESLLLQVRGSGGARLSTKDPLPTIA
SREEIEATKNHVLETFYPISPIIDLHECNIYDVKNDTGFQEGYPYPYPHTLYLLDKANLR
PHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLN
TTDLDCNEGVKNLAWVDSDQLLYQHFWCLPVIKKRVVVTGPCFSKSQMSTSFVLTPSFNA
GEEVMQRNLRASASLPPSTGSPATALSDPPLPRWQNGDTAPPFQVSPPLDQIGSIRQGFK
SMGLEFFLEARCCAGSELQNEGDMVPALWELLGYWVDTARVVSFGLAVADLRAQSFGLFS
IHSLDDFSQSGGFKDPLNGNNSHAYEAANPPSPILQMRELRTEVSTNLPKATQQVAANKI

>gi568815597r:54039523_54252922|GENSCAN_predicted_CDS_6|1803_bp
atggcattggcgtccgggcccgcaaggcgggcgctagctggctccgggcagctcggcctt
gggggcttcggggccccgagacgcggggcgtatgagtggggcgtgcgctccacgcggaag
tcggagcctcctcccctggatagggtgtacgagatccctggactggagcccatcaccttt
gcggggaagatgcacttcgtgccctggctggcgcggccgatctttccgccctgggaccgc
ggctacaaggacccaaggttctaccgctcgccccctcttcacgagcatccgctgtacaaa
gaccaggcctgctatatctttcaccaccgttgccgccttctcgagggtgtaaagcaggcc
ctctggctcaccaagaccaagttaatagaaggccttcccgagaaagtgcttagccttgtt
gatgatccaaggaaccacatagagaaccaagacgagtgcgttctgaatgtgatctctcac
gcccgtctctggcagaccactgaggaaatccccaagagagagacctactgcccggtcatc
gtggacaacctaatacagctgtgtaaatctcagattctcaagcatccttctctggccagg
aggatctgtgtccaaaactccacgttttctgctacctggaaccgagagtctcttctcctt
caagtccgtggttctggtggagcccgactgagcactaaggatcctctgcccaccatcgcc
tccagagaggagattgaagctactaagaatcatgttctagagaccttctaccccatatca
cccatcatcgatcttcatgaatgcaatatttatgatgtgaaaaatgacacaggattccag
gaaggctatccttacccctatccccataccctgtacttactggacaaagccaatttacga
ccacaccgccttcaaccagatcagctgcgggccaagatgatcctgtttgcttttggcagt
gccctggctcaggcccggctcctctatgggaatgatgccaaggtcttggagcagcccgtg
gtggtgcagagcgtgggcacggatggacgtgtcttccatttcctagtgtttcaactgaat
accacagacctggactgtaacgagggtgtcaagaatttggcctgggtggactcagaccag
ctcctctatcagcatttttggtgtctcccagtgatcaaaaagagagtggttgtgacaggt
ccttgcttctccaaatcccaaatgtctaccagcttcgtcctcactccctcattcaacgca
ggagaggaagtgatgcagcggaacttgagggcctcagccagcctcccgcccagtacaggc
tccccagccactgccctgtcagatcctccacttcctcgctggcaaaatggggatacagca
cctcccttccaagtttccccacctttggatcaaataggctccattcgccaaggtttcaag
tcgatgggtttggagttcttcttagaagccaggtgttgtgctgggagcgagttacagaat
gagggagacatggtccccgccctctgggagctcctggggtactgggtggacacggccaga
gtggtctcctttggattggcagtagcagatctcagggcccagtccttcggcctcttctcc
attcattccctagatgatttcagccagtctggtggctttaaagaccctctaaatggcaac
aactcccatgcctatgaggcagccaacccgccatcccccattttgcagatgagagaactg
agaacagaagtatcaactaatttgcccaaggccacacagcaagttgcagcaaacaagatt
taa

>gi568815597r:54039523_54252922|GENSCAN_predicted_peptide_7|244_aa
MGFGQKEGVGTAASERKVVGATARARPRELGLLPHFRALIGHPNMGGSMQRMNPPRGMGP
MGPGPQALSLWEGALPTATARAVRKGGQPLQHKSLSMGSKTKSIPSYPPEPRGKIPYSSS
SPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSRSNFPMGPGSDGPMG
GMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQNDNLN
HIPK

>gi568815597r:54039523_54252922|GENSCAN_predicted_CDS_7|735_bp
atggggtttgggcagaaggagggagtgggcactgctgcctctgagaggaaggtggttggt
gctacagccagagcaagacctagagaacttggtctcctgcctcacttcagagctctgata
ggccaccccaacatgggaggatcaatgcagagaatgaaccctccccgaggcatggggccc
atgggtcccggcccacaggccctgagcttgtgggagggagccctgcctactgccacagcc
cgggctgtcaggaagggcggccagccccttcagcataaaagcctctcaatgggttccaag
accaagtccatcccctcttacccgcctgagcccagggggaagattccatactcctcctca
tcacctggtacctatgtgggaccccctggtggtggcggtcctccaggaacacccattatg
cccagtcccgcagattcaacaaattccagtgacaacatctacacaatgattaatccagtg
ccgcctggaggcagccggtccaacttcccgatgggtcccggctcggacggtccgatgggc
ggcatgggtggcatggagccacaccacatgaatggatcattagggtcaggcgacatagac
ggacttccaaaaaattctcctaacaacataagtggcattagcaatcctccaggcacccct
cgagatgacggcgagctaggagggaacttcctccactcctttcagaacgacaatctcaac
cacatccccaaatga