Result of FASTA (omim) for pF1KB7365
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7365, 188 aa
  1>>>pF1KB7365 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5215+/-0.000274; mu= 14.1313+/- 0.017
 mean_var=100.8801+/-20.042, 0's: 0 Z-trim(120.7): 35  B-trim: 0 in 0/58
 Lambda= 0.127694
 statistics sampled from 36137 (36178) to 36137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.424), width:  16
 Scan time:  5.500

The best scores are:                                      opt bits E(85289)
NP_775494 (OMIM: 300542) protein SSX7 [Homo sapien ( 188) 1296 248.0 6.6e-66
NP_783629 (OMIM: 300192,300813) protein SSX2 isofo ( 188) 1097 211.3 7.2e-55
NP_066294 (OMIM: 300325) protein SSX3 [Homo sapien ( 188) 1088 209.7 2.3e-54
XP_016884919 (OMIM: 300542) PREDICTED: protein SSX ( 223) 1075 207.4 1.4e-53
XP_016885247 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1071 206.6   2e-53
NP_783729 (OMIM: 300327) protein SSX5 isoform b [H ( 188) 1071 206.6   2e-53
XP_011542251 (OMIM: 300327) PREDICTED: protein SSX ( 188) 1071 206.6   2e-53
XP_016885248 (OMIM: 300326) PREDICTED: protein SSX ( 188) 1048 202.3 3.8e-52
NP_005627 (OMIM: 300326) protein SSX4 isoform a [H ( 188) 1048 202.3 3.8e-52
NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo ( 188)  998 193.1 2.2e-49
NP_001265620 (OMIM: 300813,312820) protein SSX1 [H ( 188)  998 193.1 2.2e-49
NP_066295 (OMIM: 300327) protein SSX5 isoform a [H ( 229)  934 181.4 9.1e-46
NP_001265626 (OMIM: 300192,300813) protein SSX2 is ( 214)  883 172.0 5.8e-43
NP_003138 (OMIM: 300192,300813) protein SSX2 isofo ( 223)  883 172.0   6e-43
XP_011542187 (OMIM: 300325) PREDICTED: protein SSX ( 170)  869 169.3   3e-42
XP_016884920 (OMIM: 300542) PREDICTED: protein SSX ( 129)  754 148.0 5.8e-36
NP_783856 (OMIM: 300326) protein SSX4 isoform b [H ( 153)  575 115.1 5.5e-26
NP_001297143 (OMIM: 609760) histone-lysine N-methy ( 894)  226 51.5 4.4e-06
NP_064612 (OMIM: 609760) histone-lysine N-methyltr ( 894)  226 51.5 4.4e-06
XP_011521131 (OMIM: 609759) PREDICTED: probable hi ( 377)  213 48.8 1.2e-05
XP_005256331 (OMIM: 609759) PREDICTED: probable hi ( 492)  213 48.9 1.5e-05
NP_001091643 (OMIM: 609759) probable histone-lysin ( 492)  213 48.9 1.5e-05
XP_011521133 (OMIM: 609759) PREDICTED: probable hi ( 172)  184 43.1 0.00029


>>NP_775494 (OMIM: 300542) protein SSX7 [Homo sapiens]    (188 aa)
 initn: 1296 init1: 1296 opt: 1296  Z-score: 1304.2  bits: 248.0 E(85289): 6.6e-66
Smith-Waterman score: 1296; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDE
       ::::::::
NP_775 SDPEEDDE
               

>>NP_783629 (OMIM: 300192,300813) protein SSX2 isoform b  (188 aa)
 initn: 1097 init1: 1097 opt: 1097  Z-score: 1106.0  bits: 211.3 E(85289): 7.2e-55
Smith-Waterman score: 1097; 85.6% identity (92.6% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
       ::::::::::: .::::::::::.::::::::::.::::::. ::: :::::::::::::
NP_783 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
       ::::::::::: :  : :.::::.::: :.::::::::::: ::: : ::::::::::::
NP_783 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
       :::. :::::: :::::.:::::::.:::::.. ::::::.:::::::::::::::::::
NP_783 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDE
       ::::::::
NP_783 SDPEEDDE
               

>>NP_066294 (OMIM: 300325) protein SSX3 [Homo sapiens]    (188 aa)
 initn: 1088 init1: 1088 opt: 1088  Z-score: 1097.1  bits: 209.7 E(85289): 2.3e-54
Smith-Waterman score: 1088; 85.1% identity (91.5% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
       :::::.::::: .::::::::::.::::::::::.::::::  ::: :::::::::::::
NP_066 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
       ::::: :: ::.:  .::.:::::::: :.::::.:::::: ::: ::::::::::::::
NP_066 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
       : :: :::::: :::::.:::::::.::::::  ::::::.:::::::::::::::::::
NP_066 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDE
       ::::::::
NP_066 SDPEEDDE
               

>>XP_016884919 (OMIM: 300542) PREDICTED: protein SSX7 is  (223 aa)
 initn: 1073 init1: 1073 opt: 1075  Z-score: 1083.2  bits: 207.4 E(85289): 1.4e-53
Smith-Waterman score: 1194; 84.1% identity (84.1% similar) in 220 aa overlap (1-185:1-220)

               10        20        30        40        50        60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
               70        80        90       100       110       120

              130       140       150                              
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSG------------------------
       ::::::::::::::::::::::::::::::::::::                        
XP_016 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGNREVQEKEERWGIAHRWSSQKTHN
              130       140       150       160       170       180

                   160       170       180        
pF1KB7 -----------PKRGKHAWTHRLRERKQLVIYEEISDPEEDDE
                  :::::::::::::::::::::::::::::   
XP_016 INRLSLSSSMGPKRGKHAWTHRLRERKQLVIYEEISDPEEDDE
              190       200       210       220   

>>XP_016885247 (OMIM: 300327) PREDICTED: protein SSX5 is  (188 aa)
 initn: 1071 init1: 1071 opt: 1071  Z-score: 1080.1  bits: 206.6 E(85289): 2e-53
Smith-Waterman score: 1071; 83.0% identity (93.6% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
       :::::::.::::.:.:::::.::.:::::::::.:::::::. ::: :::::::::::::
XP_016 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
       :::::::::::.:  ..:.:::::::: :.:::::.::::: ::: ::::: :.::::::
XP_016 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
       ::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::::::::::
XP_016 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDE
       :::.::::
XP_016 SDPQEDDE
               

>>NP_783729 (OMIM: 300327) protein SSX5 isoform b [Homo   (188 aa)
 initn: 1071 init1: 1071 opt: 1071  Z-score: 1080.1  bits: 206.6 E(85289): 2e-53
Smith-Waterman score: 1071; 83.0% identity (93.6% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
       :::::::.::::.:.:::::.::.:::::::::.:::::::. ::: :::::::::::::
NP_783 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
       :::::::::::.:  ..:.:::::::: :.:::::.::::: ::: ::::: :.::::::
NP_783 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
       ::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::::::::::
NP_783 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDE
       :::.::::
NP_783 SDPQEDDE
               

>>XP_011542251 (OMIM: 300327) PREDICTED: protein SSX5 is  (188 aa)
 initn: 1071 init1: 1071 opt: 1071  Z-score: 1080.1  bits: 206.6 E(85289): 2e-53
Smith-Waterman score: 1071; 83.0% identity (93.6% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
       :::::::.::::.:.:::::.::.:::::::::.:::::::. ::: :::::::::::::
XP_011 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
       :::::::::::.:  ..:.:::::::: :.:::::.::::: ::: ::::: :.::::::
XP_011 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
       ::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::::::::::
XP_011 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDE
       :::.::::
XP_011 SDPQEDDE
               

>>XP_016885248 (OMIM: 300326) PREDICTED: protein SSX4 is  (188 aa)
 initn: 1048 init1: 1048 opt: 1048  Z-score: 1057.2  bits: 202.3 E(85289): 3.8e-52
Smith-Waterman score: 1048; 82.4% identity (90.4% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
       ::::::::::::  ::: ::..:.:::::::::::::::::: ::: ::::: .::.:::
XP_016 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
       ::::.::::::..  :.:..:::: ::::. ::::::::::  :::::::::::::::: 
XP_016 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
       :  : :::::: :::::.:::::.::: :::::::::::::::::::::::::::.::::
XP_016 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDE
       ::::::::
XP_016 SDPEEDDE
               

>>NP_005627 (OMIM: 300326) protein SSX4 isoform a [Homo   (188 aa)
 initn: 1048 init1: 1048 opt: 1048  Z-score: 1057.2  bits: 202.3 E(85289): 3.8e-52
Smith-Waterman score: 1048; 82.4% identity (90.4% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
       ::::::::::::  ::: ::..:.:::::::::::::::::: ::: ::::: .::.:::
NP_005 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
       ::::.::::::..  :.:..:::: ::::. ::::::::::  :::::::::::::::: 
NP_005 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
       :  : :::::: :::::.:::::.::: :::::::::::::::::::::::::::.::::
NP_005 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDE
       ::::::::
NP_005 SDPEEDDE
               

>>NP_005626 (OMIM: 300813,312820) protein SSX1 [Homo sap  (188 aa)
 initn: 998 init1: 998 opt: 998  Z-score: 1007.5  bits: 193.1 E(85289): 2.2e-49
Smith-Waterman score: 998; 79.3% identity (88.8% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
       :::::.::.:::  :.  :: .:.::::: :::::::.:::  ::::::::::.:.::::
NP_005 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
       ::::.:::::: :  :::.::::::::.:.  :::.::::: ::.::.::::::::::. 
NP_005 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
       :::::: :::: :::::.: :::: . :::::: ::::::::::::::::::::::::::
NP_005 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
              130       140       150       160       170       180

               
pF1KB7 SDPEEDDE
       ::::::::
NP_005 SDPEEDDE
               




188 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:52:55 2016 done: Fri Nov  4 06:52:56 2016
 Total Scan time:  5.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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