Result of FASTA (ccds) for pF1KB7248
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7248, 534 aa
  1>>>pF1KB7248 534 - 534 aa - 534 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8481+/-0.000874; mu= 21.7715+/- 0.053
 mean_var=77.0620+/-14.932, 0's: 0 Z-trim(107.8): 53  B-trim: 2 in 1/51
 Lambda= 0.146101
 statistics sampled from 9750 (9797) to 9750 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.301), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS3864.1 LPCAT1 gene_id:79888|Hs108|chr5         ( 534) 3558 759.6       0
CCDS10753.1 LPCAT2 gene_id:54947|Hs108|chr16       ( 544) 1526 331.3 1.7e-90
CCDS32191.1 LPCAT4 gene_id:254531|Hs108|chr15      ( 524) 1107 243.0 6.4e-64


>>CCDS3864.1 LPCAT1 gene_id:79888|Hs108|chr5              (534 aa)
 initn: 3558 init1: 3558 opt: 3558  Z-score: 4053.0  bits: 759.6 E(32554):    0
Smith-Waterman score: 3558; 100.0% identity (100.0% similar) in 534 aa overlap (1-534:1-534)

               10        20        30        40        50        60
pF1KB7 MRLRGCGPRAAPASSAGASDARLLAPPGRNPFVHELRLSALQKAQVALMTLTLFPVRLLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MRLRGCGPRAAPASSAGASDARLLAPPGRNPFVHELRLSALQKAQVALMTLTLFPVRLLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AAAMMLLAWPLALVASLGSAEKEPEQPPALWRKVVDFLLKAIMRTMWFAGGFHRVAVKGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 AAAMMLLAWPLALVASLGSAEKEPEQPPALWRKVVDFLLKAIMRTMWFAGGFHRVAVKGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QALPTEAAILTLAPHSSYFDAIPVTMTMSSIVMKAESRDIPIWGTLIQYIRPVFVSRSDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 QALPTEAAILTLAPHSSYFDAIPVTMTMSSIVMKAESRDIPIWGTLIQYIRPVFVSRSDQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPVVLRYPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPVVLRYPN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNVRRVMAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 KLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNVRRVMAE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 ALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDLDRYSERAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 ALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDLDRYSERAR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 MKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVALSVVCRPARTLDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVALSVVCRPARTLDT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 IQLAFKMYGAQEDGSVGEGDLSCILKTALGVAELTVTDLFRAIDQEEKGKITFADFHRFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 IQLAFKMYGAQEDGSVGEGDLSCILKTALGVAELTVTDLFRAIDQEEKGKITFADFHRFA
              430       440       450       460       470       480

              490       500       510       520       530    
pF1KB7 EMYPAFAEEYLYPDQTHFESCAETSPAPIPNGFCADFSPENSDAGRKPVRKKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EMYPAFAEEYLYPDQTHFESCAETSPAPIPNGFCADFSPENSDAGRKPVRKKLD
              490       500       510       520       530    

>>CCDS10753.1 LPCAT2 gene_id:54947|Hs108|chr16            (544 aa)
 initn: 1353 init1: 1353 opt: 1526  Z-score: 1738.1  bits: 331.3 E(32554): 1.7e-90
Smith-Waterman score: 1526; 44.6% identity (75.2% similar) in 509 aa overlap (21-523:33-535)

                         10        20        30        40        50
pF1KB7           MRLRGCGPRAAPASSAGASDARLLAPPGRNPFVHELRLSALQKAQVALMT
                                     : .. ::  ::::.. .... ...:..:. 
CCDS10 RCAQAAEVAATVPGAGVGNVGLRPPMVPRQASFFPPPVPNPFVQQTQIGSARRVQIVLLG
             10        20        30        40        50        60  

               60        70        80        90        100         
pF1KB7 LTLFPVRLLVAAAMMLLAWPLALVASLGSAEKEPEQPPALWR-KVVDFLLKAIMRTMWFA
       . :.:.:.:..: ..:::::.: ....   ::   .: . :: :...  :: . :.:.:.
CCDS10 IILLPIRVLLVALILLLAWPFAAISTVCCPEKLT-HPITGWRRKITQTALKFLGRAMFFS
             70        80        90        100       110       120 

     110       120       130       140        150       160        
pF1KB7 GGFHRVAVKGRQALPTEAAILTLAPHSSYFDAIP-VTMTMSSIVMKAESRDIPIWGTLIQ
        ::  :::::. : : :: ... ::::..::.:  :.  . :.: . :. ..:. : :..
CCDS10 MGFI-VAVKGKIASPLEAPVFVAAPHSTFFDGIACVVAGLPSMVSRNENAQVPLIGRLLR
              130       140       150       160       170       180

      170       180       190       200       210       220        
pF1KB7 YIRPVFVSRSDQDSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPG
        ..::.::: : :::..:..:: .:. :.:.::::..:::::::::.:::::::::::::
CCDS10 AVQPVLVSRVDPDSRKNTINEIIKRTTSGGEWPQILVFPEGTCTNRSCLITFKPGAFIPG
              190       200       210       220       230       240

      230       240       250       260       270       280        
pF1KB7 APVQPVVLRYPNKLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPA
       .:::::.:::::::::.::::::   ...  ::.::. ..::.::.::  :..::: .:.
CCDS10 VPVQPVLLRYPNKLDTVTWTWQGYTFIQLCMLTFCQLFTKVEVEFMPVQVPNDEEKNDPV
              250       260       270       280       290       300

      290       300       310       320       330       340        
pF1KB7 LYASNVRRVMAEALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKL
       :.:..:: .::::::. :::.:.:::.: .. ::: :: .. :.::... : : :  . .
CCDS10 LFANKVRNLMAEALGIPVTDHTYEDCRLMISAGQLTLPMEAGLVEFTKISRKLKLDWDGV
              310       320       330       340       350       360

      350       360       370       380       390       400        
pF1KB7 EKDLDRYSERARMKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVAL
       .: ::.:.  :  . : .::: :::  :..::::.:...:.:::.. .: .:.:: :..:
CCDS10 RKHLDEYASIASSSKGGRIGIEEFAKYLKLPVSDVLRQLFALFDRNHDGSIDFREYVIGL
              370       380       390       400       410       420

      410       420       430       440       450       460        
pF1KB7 SVVCRPARTLDTIQLAFKMYGAQEDGSVGEGDLSCILKTALGVAELTVTDLFRAIDQEEK
       .:.: :. : . ::.:::.. ..::: . : ..: ::...::: .: :. ::. : : . 
CCDS10 AVLCNPSNTEEIIQVAFKLFDVDEDGYITEEEFSTILQASLGVPDLDVSGLFKEIAQGD-
              430       440       450       460       470          

      470       480       490       500           510       520    
pF1KB7 GKITFADFHRFAEMYPAFAEEYLYPDQTHFESCAETS-PAPI---PNGFCADFSPENSDA
        .:.. .:. ::  .: .:.  ..     ...:   : :  .   :.      :::. . 
CCDS10 -SISYEEFKSFALKHPEYAK--IFTTYLDLQTCHVFSLPKEVQTTPSTASNKVSPEKHEE
      480       490         500       510       520       530      

          530    
pF1KB7 GRKPVRKKLD
                 
CCDS10 STSDKKDD  
        540      

>>CCDS32191.1 LPCAT4 gene_id:254531|Hs108|chr15           (524 aa)
 initn: 1068 init1: 726 opt: 1107  Z-score: 1261.0  bits: 243.0 E(32554): 6.4e-64
Smith-Waterman score: 1107; 37.6% identity (68.6% similar) in 500 aa overlap (26-510:18-505)

               10        20         30        40        50         
pF1KB7 MRLRGCGPRAAPASSAGASDARLLAPPGR-NPFVHELRLSALQKAQVALMTLTLFPVRLL
                                ::.  :::::::.:: ::...  :.   : :.:.:
CCDS32         MSQGSPGDWAPLDPTPGPPASPNPFVHELHLSRLQRVKFCLLGALLAPIRVL
                       10        20        30        40        50  

      60        70        80        90         100       110       
pF1KB7 VAAAMMLLAWPLALVASLGSAEKEPEQPPALWRKVV--DFLLKAIMRTMWFAGGFHRVAV
       .:  ...: ::.: .   : .:.. ..: . :::.:  . .: .. : ..:  :: :. :
CCDS32 LAFIVLFLLWPFAWLQVAGLSEEQLQEPITGWRKTVCHNGVL-GLSRLLFFLLGFLRIRV
             60        70        80        90        100       110 

       120       130       140          150       160       170    
pF1KB7 KGRQALPTEAAILTLAPHSSYFDAIPVTMT---MSSIVMKAESRDIPIWGTLIQYIRPVF
       .:..:   .: .:. ::::..::  :...    . ..: .::. ..:. :.:... . ..
CCDS32 RGQRASRLQAPVLVAAPHSTFFD--PIVLLPCDLPKVVSRAENLSVPVIGALLRFNQAIL
             120       130         140       150       160         

          180       190       200       210       220       230    
pF1KB7 VSRSDQDSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPV
       ::: :  :::..:::..::: :.:::::...::::::.:.  :. ::::::: :.:::::
CCDS32 VSRHDPASRRRVVEEVRRRATSGGKWPQVLFFPEGTCSNKKALLKFKPGAFIAGVPVQPV
     170       180       190       200       210       220         

          240       250       260       270       280       290    
pF1KB7 VLRYPNKLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNV
       ..::::.::: .:.:.:::.:..::::  :  . :..:::::: :: ::.:.:.:::.::
CCDS32 LIRYPNSLDTTSWAWRGPGVLKVLWLTASQPCSIVDVEFLPVYHPSPEESRDPTLYANNV
     230       240       250       260       270       280         

          300       310       320       330       340       350    
pF1KB7 RRVMAEALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDLDR
       .::::.:::. .:.  :     ... :.:..  .  : :.....:  ::.   .  :   
CCDS32 QRVMAQALGIPATECEFVGSLPVIVVGRLKVALEPQLWELGKVLRKAGLSAGYV--DAGA
     290       300       310       320       330       340         

          360       370       380       390       400       410    
pF1KB7 YSERARMKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVALSVVCRP
          :.:: . :     ::: .:..   . .   :. :... .: ::.:. ..::...   
CCDS32 EPGRSRMISQE-----EFARQLQLSDPQTVAGAFGYFQQDTKGLVDFRDVALALAAL-DG
       350            360       370       380       390        400 

          420        430           440       450       460         
pF1KB7 ARTLDTI-QLAFKMYGA-QEDGS---VGEGDLSCILKTALGVAELTVTDLFRAIDQEEKG
       .:.:. . .:::....  : .:    . .  .: ::.  ::  . ..: :   . :  ..
CCDS32 GRSLEELTRLAFELFAEEQAEGPNRLLYKDGFSTILHLLLGSPHPAATALHAELCQAGSS
             410       420       430       440       450       460 

     470        480          490       500       510       520     
pF1KB7 K-ITFADFHRFAEMYPAFAE---EYLYPDQTHFESCAETSPAPIPNGFCADFSPENSDAG
       . ... .:. :.   : ...    :: : .:  .. ..:  :  :               
CCDS32 QGLSLCQFQNFSLHDPLYGKLFSTYLRPPHTS-RGTSQTPNASSPGNPTALANGTVQAPK
             470       480       490        500       510       520

         530    
pF1KB7 RKPVRKKLD
                
CCDS32 QKGD     
                




534 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:18:56 2016 done: Fri Nov  4 06:18:57 2016
 Total Scan time:  3.530 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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