Result of FASTA (omim) for pF1KB7204
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7204, 189 aa
  1>>>pF1KB7204 189 - 189 aa - 189 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2636+/-0.000408; mu= 12.6960+/- 0.025
 mean_var=58.2362+/-11.647, 0's: 0 Z-trim(110.9): 17  B-trim: 38 in 1/50
 Lambda= 0.168065
 statistics sampled from 19319 (19336) to 19319 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.227), width:  16
 Scan time:  5.580

The best scores are:                                      opt bits E(85289)
NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 1242 309.5 2.1e-84
NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 1106 276.5 1.8e-74
NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 1082 270.7   1e-72
NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 1081 270.4 1.2e-72
NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 1061 265.6 3.4e-71
NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1053 263.6 1.3e-70
NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1040 260.5 1.2e-69
NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1039 260.3 1.4e-69
NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188)  991 248.6 4.4e-66
NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189)  975 244.7 6.5e-65
NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189)  973 244.3 9.1e-65
NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190)  944 237.2 1.2e-62
NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189)  939 236.0 2.7e-62
NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195)  681 173.5 1.9e-43
NP_002167 (OMIM: 147640) interferon beta precursor ( 187)  347 92.5 4.4e-19
NP_795372 (OMIM: 615223) interferon epsilon precur ( 208)  340 90.8 1.6e-18
NP_064509 (OMIM: 615326) interferon kappa precurso ( 207)  158 46.7   3e-05


>>NP_002164 (OMIM: 147580) interferon alpha-16 precursor  (189 aa)
 initn: 1242 init1: 1242 opt: 1242  Z-score: 1636.3  bits: 309.5 E(85289): 2.1e-84
Smith-Waterman score: 1242; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       :::::::::
NP_002 LQKGLRRKD
                

>>NP_066546 (OMIM: 147564) interferon alpha-4 precursor   (189 aa)
 initn: 1106 init1: 1106 opt: 1106  Z-score: 1458.1  bits: 276.5 E(85289): 1.8e-74
Smith-Waterman score: 1106; 88.9% identity (95.2% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       ::.: :::.:::::::::..:::::::::::::.::::::...::.::  ::.:::::::
NP_066 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: :::::::  :::::::::::::::::::::  ::::::::::::::::::.:::::
NP_066 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::: :::::
NP_066 LQKRLRRKD
                

>>NP_067091 (OMIM: 147583) interferon alpha-17 precursor  (189 aa)
 initn: 1082 init1: 1082 opt: 1082  Z-score: 1426.6  bits: 270.7 E(85289): 1e-72
Smith-Waterman score: 1082; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::.:::
NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       .::: ::::::::.::::..:::::::::::::.::::::...::.::  ::.::::.::
NP_067 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: ::::.::  :::::::::::::::::::::  ::::::::::::::::::.:::::
NP_067 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::: :::::
NP_067 LQKILRRKD
                

>>NP_002162 (OMIM: 147577) interferon alpha-10 precursor  (189 aa)
 initn: 1081 init1: 1081 opt: 1081  Z-score: 1425.3  bits: 270.4 E(85289): 1.2e-72
Smith-Waterman score: 1081; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       :::::::::::::::::::::::::::::::::::::::::.:::::: :::::::.:: 
NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       .::: :::::::::::::..:::::::::::::.::::::...::.::  ::.:::::::
NP_002 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: :::::::  :::::::::::::::::::::. .:::::::::::::::::.:::::
NP_002 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::: :::::
NP_002 LQKRLRRKD
                

>>NP_066401 (OMIM: 147567) interferon alpha-7 precursor   (189 aa)
 initn: 1061 init1: 1061 opt: 1061  Z-score: 1399.1  bits: 265.6 E(85289): 3.4e-71
Smith-Waterman score: 1061; 85.7% identity (93.7% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       :: ::::::.:::::::::::::::::::::: ::::::::::::::: :::::::..: 
NP_066 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       ::.: :::.::::.::::..:::::::::::::.::::::...::.::  ::.:::::::
NP_066 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: :::::::  ::::: :::::::::::::::: ::::::::::::::::::::::::
NP_066 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       :.:::::::
NP_066 LKKGLRRKD
                

>>NP_002166 (OMIM: 147584) interferon alpha-21 precursor  (189 aa)
 initn: 1074 init1: 1053 opt: 1053  Z-score: 1388.6  bits: 263.6 E(85289): 1.3e-70
Smith-Waterman score: 1053; 85.7% identity (92.6% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::.:::
NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       :::: :::::::::::::..::::::::::::::::::.:...::.::  :: :::::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: :::::::  ::: ::::::.::::::::::  ::::::::::::::::::::.:  
NP_002 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       .:. ::::.
NP_002 FQERLRRKE
                

>>NP_002163 (OMIM: 147579) interferon alpha-14 precursor  (189 aa)
 initn: 1040 init1: 1040 opt: 1040  Z-score: 1371.6  bits: 260.5 E(85289): 1.2e-69
Smith-Waterman score: 1040; 83.6% identity (93.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       ::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: :::::::.:: 
NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       :::: :::::::::::::..:::.::::::::::.::::::::::.:::::::::.::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: :::::::  ::::::::::.::::::::::: ::::::::::::::::::.:::::
NP_002 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::: :::::
NP_002 LQKRLRRKD
                

>>NP_002160 (OMIM: 147565) interferon alpha-5 precursor   (189 aa)
 initn: 1039 init1: 1039 opt: 1039  Z-score: 1370.3  bits: 260.3 E(85289): 1.4e-69
Smith-Waterman score: 1039; 82.5% identity (93.1% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       ::: : ::::..::. ::::::::::::::::.:::.:...::::::: :::::::.:::
NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       :::: :::::::::::::..::::::::::::::::::.:::::::::: ::.:::::::
NP_002 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::. ::::::.  ::: ::::.::::::::::::  ::::::::::::::::::::.:.:
NP_002 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::. ::::.
NP_002 LQERLRRKE
                

>>NP_000596 (OMIM: 147562) interferon alpha-2 precursor   (188 aa)
 initn: 989 init1: 654 opt: 991  Z-score: 1307.4  bits: 248.6 E(85289): 4.4e-66
Smith-Waterman score: 991; 81.0% identity (91.0% similar) in 189 aa overlap (1-189:1-188)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       :::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::.:::
NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       :::: : :::::::..: ..:::::: :::::::::::::::::::::: ::.:::::::
NP_000 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
                70        80        90       100       110         

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: : ::: :  ::.::::::::::::::::::  ::::::::::::::::::::.:::
NP_000 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
     120       130       140       150       160       170         

                
pF1KB7 LQKGLRRKD
       ::..:: :.
NP_000 LQESLRSKE
     180        

>>NP_066282 (OMIM: 147566) interferon alpha-6 precursor   (189 aa)
 initn: 975 init1: 975 opt: 975  Z-score: 1286.4  bits: 244.7 E(85289): 6.5e-65
Smith-Waterman score: 975; 79.9% identity (88.9% similar) in 189 aa overlap (1-189:1-189)

               10        20        30        40        50        60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
       ::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::.:: 
NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
       :::: :::::::::.:::..::.::::::::::::::.:::: ::::.: ::.:::::::
NP_066 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
       ::: ::: :    :::::::::::::::::::::  :::::::::::::::::::: : :
NP_066 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
              130       140       150       160       170       180

                
pF1KB7 LQKGLRRKD
       ::. ::::.
NP_066 LQERLRRKE
                




189 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:56:37 2016 done: Fri Nov  4 05:56:37 2016
 Total Scan time:  5.580 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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