GENSCAN 1.0	Date run:  4-Nov-116	Time: 05:52:36

Sequence gi568815597f:28712384_28963280 : 250897 bp : 46.69% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   1690   2390  701  2  2   97   36   637 0.862  53.10
 1.02 PlyA +   5805   5810    6                               1.05

 2.00 Prom +   9765   9804   40                              -6.46
 2.01 Init +  24738  24764   27  2  0   79   92    28 0.670   2.06
 2.02 Intr +  25275  25299   25  2  1  105  115    16 0.785   3.60
 2.03 Intr +  25876  25955   80  2  2   80   86    23 0.784   0.57
 2.04 Intr +  30020  31603 1584  1  0  130   86   830 0.743  76.04
 2.05 Term +  37224  37241   18  2  0   96   42    26 0.302  -2.88
 2.06 PlyA +  38551  38556    6                               1.05

 3.00 Prom +  46482  46521   40                              -5.06
 3.01 Init +  63104  63161   58  1  1   83   99    74 0.646   8.05
 3.02 Term +  76527  76612   86  1  2   75   53    56 0.118  -1.38
 3.03 PlyA +  76791  76796    6                               1.05

 4.00 Prom +  91582  91621   40                              -6.26
 4.01 Init + 100001 100227  227  1  2   97  117   411 0.995  42.84
 4.02 Intr + 100344 100414   71  0  2  101   22    88 0.515   2.33
 4.03 Term + 102516 102559   44  1  2   64   55    64 0.283  -1.98
 4.04 PlyA + 103855 103860    6                               1.05

 5.04 PlyA - 108712 108707    6                               1.05
 5.03 Term - 113632 113435  198  1  0   79   37   105 0.896   1.90
 5.02 Intr - 114373 114309   65  2  2   54   94    94 0.962   5.04
 5.01 Init - 115301 115124  178  2  1   74  -29   174 0.534   3.72
 5.00 Prom - 116044 116005   40                              -4.26

 6.00 Prom + 118826 118865   40                              -3.16
 6.01 Init + 146581 146920  340  0  1   68   84   689 0.527  63.92
 6.02 Term + 150359 150900  542  0  2   65   47  1226 0.984 110.62
 6.03 PlyA + 151723 151728    6                              -0.45

 7.06 PlyA - 152732 152727    6                               1.05
 7.05 Term - 155493 155448   46  2  1   93   42    31 0.043  -4.32
 7.04 Intr - 164887 164807   81  0  0   59   85    52 0.189   0.75
 7.03 Intr - 165087 164991   97  1  1  122   94    63 0.407   9.37
 7.02 Intr - 178620 178520  101  2  2   89  110    22 0.286   4.25
 7.01 Init - 184079 184027   53  2  2   80   73     8 0.084  -0.87
 7.00 Prom - 197803 197764   40                              -4.56

 8.03 PlyA - 199791 199786    6                               1.05
 8.02 Term - 202606 202253  354  1  0  102   42   252 0.963  16.49
 8.01 Init - 225845 225603  243  2  0   80   12   148 0.046   4.13

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl - 225845 225555  291  2  0   80   38   139 0.902   3.75


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:28712384_28963280|GENSCAN_predicted_peptide_1|233_aa
XLERQLEEQKKQGQDHRLKSQTVQNVVLMPVSTPKPPKRPRLQRPASTTVLSPSPPVQQP
QFTVISPITITPVGQSFSMGNIPVATLSQGSSPVTVHTLPSGPQLFRYATVVSSAKSSSP
DTVTIHPSSSLALLSSTAMQDGSTLGNMTTMVSPVELVAMESGLTSAIQAVESTSEDGQT
IIEIDPAPDPEAEDTEGKAVILETELRTEEKVVAEMEEHQHQVHNVEIVVLED

>gi568815597f:28712384_28963280|GENSCAN_predicted_CDS_1|702_bp
nacttggaacgccagttggaggagcagaagaagcaaggccaggatcacaggctgaaatct
cagacagttcaaaatgtggtactgatgcctgtgagcactcctaagcctccaaaaaggccc
cggctccagcggccagcctccaccactgtcttgagcccttctcctcctgtccagcagcct
cagttcacagtcatctcacccatcaccatcaccccagtgggtcagtcattttccatgggc
aatattccagtggccaccctcagccagggctccagtcctgtgactgtccacacactgcct
tctggccctcagctcttccgctatgccacagtggtctcctctgccaagagcagctcacca
gacacagtgaccatccacccttcatctagcttggcgctgctgagctctactgccatgcag
gatgggagtacactgggcaacatgaccaccatggttagccctgtggaattggtggccatg
gagtccggcctaacctcggcaattcaggctgttgaaagcacctcagaggatgggcagacc
atcattgagattgatccagccccggacccagaagctgaagatactgagggcaaagcagtc
atcttggagacagagctgaggactgaggagaaagttgtggctgagatggaagaacaccag
catcaagttcacaatgtggagattgtggtcttagaggattaa

>gi568815597f:28712384_28963280|GENSCAN_predicted_peptide_2|577_aa
MSASSLLEQRPKGQGNKVQNGSVHQKDGLNDDDFEPYLSPQARPNNAYTAMSDSYLPSYY
SPSIGFSYSLGEAAWSTGGDTAMPYLTSYGQLSNGEPHFLPDAMFGQPGALGSTPFLGQH
GFNFFPSGIDFSAWGNNSSQGQSTQSSGYSSNYAYAPSSLGGAMIDGQSAFANETLNKAP
GMNTIDQGMAALKLGSTEVASNVPKVVGSAVGSGSITSNIVASNSLPPATIAPPKPASWA
DIASKPAKQQPKLKTKNGIAGSSLPPPPIKHNMDIGTWDNKGPVAKAPSQALVQNIGQPT
QGSPQPVGQQANNSPPVAQASVGQQTQPLPPPPPQPAQLSVQQQAAQPTRWVAPRNRGSG
FGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSE
DDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYN
TCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQV
LKIIASYKHTTSIFDDFSHYEKRQEEEESVKKPFNYK

>gi568815597f:28712384_28963280|GENSCAN_predicted_CDS_2|1734_bp
atgtcggccagcagcctcttggagcagagaccaaaaggtcaaggaaacaaagtacaaaat
ggatctgtacatcaaaaggatggattaaacgatgatgattttgaaccttacttgagtcca
caggcaaggcccaataatgcatatactgccatgtcagattcctacttacccagttactac
agtccctccattggcttctcctattctttgggtgaagctgcttggtctacggggggtgac
acagccatgccctacttaacttcttatggacagctgagcaacggagagccccacttccta
ccagatgcaatgtttgggcaaccaggagccctaggtagcactccatttcttggtcagcat
ggttttaatttctttcccagtgggattgacttctcagcatggggaaataacagttctcag
ggacagtctactcagagctctggatatagtagcaattatgcttatgcacctagctcctta
ggtggagccatgattgatggacagtcagcttttgccaatgagaccctcaataaggctcct
ggcatgaatactatagaccaagggatggcagcactgaagttgggtagcacagaagttgca
agcaatgttccaaaagttgtaggttctgctgttggtagcgggtccattactagtaacatc
gtggcttccaatagtttgcctccagccaccattgctcctccaaaaccagcatcttgggct
gatattgctagcaagcctgcaaaacagcaacctaaactgaagaccaagaatggcattgca
gggtcaagtcttccgccacccccgataaagcataacatggatattggaacttgggataac
aagggtcccgttgcaaaagccccctcacaggctttggttcagaatataggtcagccaacc
caggggtctcctcagcctgtaggtcagcaggctaacaatagcccaccagtggctcaggca
tcagtagggcaacagacacagccattgcctccacctccaccacagcctgcccagctttca
gtccagcaacaggcagctcagccaacccgctgggtagcacctcggaaccgtggcagtggg
ttcggtcataatggggtggatggtaatggagtaggacagtctcaggctggttctggatct
actccttcagaaccccacccagtgttggagaagcttcggtccattaataactataacccc
aaagattttgactggaatctgaaacatggccgggttttcatcattaagagctactctgag
gacgatattcaccgttccattaagtataatatttggtgcagcacagagcatggtaacaag
agactggatgctgcttatcgttccatgaacgggaaaggccccgtttacttacttttcagt
gtcaacggcagtggacacttctgtggcgtggcagaaatgaaatctgctgtggactacaac
acatgtgcaggtgtgtggtcccaggacaaatggaagggtcgttttgatgtcaggtggatt
tttgtgaaggacgttcccaatagccaactgcgacacattcgcctagagaacaacgagaat
aaaccagtgaccaactctagggacactcaggaagtgcctctggaaaaggctaagcaggtg
ttgaaaattatagccagctacaagcacaccacttccatttttgatgacttctcacactat
gagaaacgccaagaggaagaagaaagtgttaaaaagccctttaactacaagtaa

>gi568815597f:28712384_28963280|GENSCAN_predicted_peptide_3|47_aa
MVSALASAPVRKRPALTCAGSLSWWMSASSNSLLKPEACASHSRLES

>gi568815597f:28712384_28963280|GENSCAN_predicted_CDS_3|144_bp
atggtgtccgcccttgcttctgcgcctgtgcggaagcgcccggccctcacctgcgcaggg
tccctgtcatggtggatgtctgcatcatccaactcgttgcttaagccagaggcctgtgcg
agtcactctcgactcgagtcctga

>gi568815597f:28712384_28963280|GENSCAN_predicted_peptide_4|113_aa
MEPAPSAGAELQPPLFANASDAYPSACPSAGANASGPPGARSASSLALAIAITALYSAVC
AVGLLGNVLVMFGIVRGTWGPARGEATYIEGNTGMCVIVCIRIIISTRILQIK

>gi568815597f:28712384_28963280|GENSCAN_predicted_CDS_4|342_bp
atggaaccggccccctccgccggcgccgagctgcagcccccgctcttcgccaacgcctcg
gacgcctaccctagcgcctgccccagcgctggcgccaatgcgtcggggccgccaggcgcg
cggagcgcctcgtccctcgccctggcaatcgccatcaccgcgctctactcggccgtgtgc
gccgtggggctgctgggcaacgtgcttgtcatgttcggcatcgtccggggcacctggggc
ccagcgagaggcgaggccacttacatcgaggggaacacaggaatgtgtgtcatcgtgtgc
attagaatcatcatcagtacccgcatcctgcagataaaatga

>gi568815597f:28712384_28963280|GENSCAN_predicted_peptide_5|146_aa
MDDFEGFEASVEEVTADVVEIARELELEVGPEDVTELLLLQSHEKTLMDEKLLLIDEQEK
IATATPTFGNHYPQPAAINIETVSSMRARTVSSSLLHPKYLELCLVLQGGQPNDVEFFYH
PHFTDEKTDSTLSSTVDSQQEAGFEP

>gi568815597f:28712384_28963280|GENSCAN_predicted_CDS_5|441_bp
atggatgactttgaggggttcgaggcttcagtggaggaagtaactgcagatgtagtagaa
atagcaagagaactagaattagaagtggggcctgaagatgtgactgaattgctgctgctg
caatctcatgaaaaaactttaatggatgagaagttgcttcttatagatgagcaagaaaaa
attgccacagccaccccaaccttcggcaaccactacccccaaccagcagccatcaatatt
gagactgtcagctccatgagggcaaggactgtgtcttcatcactgttgcatcccaagtac
ctagaactgtgcctggtacttcaggggggacaacccaatgatgtagagtttttctatcat
ccccatttcacagatgagaaaacagacagcacgctgagttcaacagtggacagccagcaa
gaagctggatttgaaccctag

>gi568815597f:28712384_28963280|GENSCAN_predicted_peptide_6|293_aa
MKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTL
TMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCM
LQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVRLLSGSKEKDRSLRRI
TRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDRRDPLVVAALHLCIALGYANSSLNPVLYA
FLDENFKRCFRQLCRKPCGRPDPSSFSRAREATARERVTACTPSDGPGGGAAA

>gi568815597f:28712384_28963280|GENSCAN_predicted_CDS_6|882_bp
atgaagacggccaccaacatctacatcttcaacctggccttagccgatgcgctggccacc
agcacgctgcctttccagagtgccaagtacctgatggagacgtggcccttcggcgagctg
ctctgcaaggctgtgctctccatcgactactacaatatgttcaccagcatcttcacgctc
accatgatgagtgttgaccgctacatcgctgtctgccaccctgtcaaggccctggacttc
cgcacgcctgccaaggccaagctgatcaacatctgtatctgggtcctggcctcaggcgtt
ggcgtgcccatcatggtcatggctgtgacccgtccccgggacggggcagtggtgtgcatg
ctccagttccccagccccagctggtactgggacacggtgaccaagatctgcgtgttcctc
ttcgccttcgtggtgcccatcctcatcatcaccgtgtgctatggcctcatgctgctgcgc
ctgcgcagtgtgcgcctgctgtcgggctccaaggagaaggaccgcagcctgcggcgcatc
acgcgcatggtgctggtggttgtgggcgccttcgtggtgtgttgggcgcccatccacatc
ttcgtcatcgtctggacgctggtggacatcgaccggcgcgacccgctggtggtggctgcg
ctgcacctgtgcatcgcgctgggctacgccaatagcagcctcaaccccgtgctctacgct
ttcctcgacgagaacttcaagcgctgcttccgccagctctgccgcaagccctgcggccgc
ccagaccccagcagcttcagccgcgcccgcgaagccacggcccgcgagcgtgtcaccgcc
tgcaccccgtccgatggtcccggcggtggcgctgccgcctga

>gi568815597f:28712384_28963280|GENSCAN_predicted_peptide_7|125_aa
MPSTGPDTEEKQMTRKGRGHPTEAAQLVPQFPSLKIPELRALLQQGSNSSTGTNSNAQLP
GMSNGGQNGIEQELSKDANARYSRCTDVHVYGSGVWVTGVQMEAYLYVAVRSLALTLNPG
STCKQ

>gi568815597f:28712384_28963280|GENSCAN_predicted_CDS_7|378_bp
atgcccagcacagggcctgacacagaggaaaagcagatgactagaaaagggaggggccac
ccaacagaggcagcacagcttgttccccagttccccagcctcaagatcccagagctcaga
gctttgctccagcaggggtcaaacagttccacaggaaccaattccaatgcacagcttcca
gggatgagcaatggaggacagaatggaatagagcaggaactaagcaaggatgctaatgca
agatatagccggtgtacggatgtgcatgtgtatgggtcaggtgtatgggtcacaggtgta
cagatggaggcctatttgtatgtggctgtgaggtctctagctctgaccctgaaccctggc
tccacttgtaagcagtga

>gi568815597f:28712384_28963280|GENSCAN_predicted_peptide_8|198_aa
MDKTDAKIHMEIQGIARTAKTMLKNKTTVRGLTLTNFKAYHKPTVIKTMWYQHKDKHVDQ
RNGTESPEINSYIYIQLVATRRLWPAPRSSGRVPAGDSACTRGSSAGEPAPRPGACRGLQ
TKRLQRRRGRQDRPHGDSSTPTAPAPAPPPPPRLTGGSGAGLLRPPLLQPDEQWQEEAPA
SEARALCGSRARRLLLAD

>gi568815597f:28712384_28963280|GENSCAN_predicted_CDS_8|597_bp
atggacaaaactgatgctaaaattcatatggaaatacaagggatagccagaacagccaaa
acaatgttgaaaaataagaccacagttagaggactcacacttaccaatttcaaagcttac
cacaaacctacagtaatcaagacaatgtggtaccagcataaggataaacacgtagatcaa
cggaatggaactgagagtccagaaataaactcatacatctatatccagttggttgcaaca
aggcggctctggcccgcccctcgctcctcgggccgcgtcccggctggcgactcggcgtgc
acacgaggctcctccgcgggagagcccgcgccccggcccggggcctgtcgggggttgcag
acaaagaggctgcagcgccgccgcggccgccaggaccgtccccacggggacagctccacg
cccaccgccccggctcccgcgccgccgccgccgcctcgcctcaccggtggctccggggcc
gggctcctgcgcccgccactgctgcagcccgacgaacaatggcaggaggaggcgccggcg
tccgaggctcgggccctctgcggctcgcgggcccgccggctgctgctggctgactga