Result of FASTA (omim) for pF1KB7195
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7195, 129 aa
  1>>>pF1KB7195 129 - 129 aa - 129 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2619+/-0.000311; mu= 11.0049+/- 0.019
 mean_var=68.7094+/-13.586, 0's: 0 Z-trim(117.4): 28  B-trim: 59 in 1/50
 Lambda= 0.154727
 statistics sampled from 29322 (29350) to 29322 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.727), E-opt: 0.2 (0.344), width:  16
 Scan time:  4.570

The best scores are:                                      opt bits E(85289)
NP_000501 (OMIM: 136530,229070) follitropin subuni ( 129)  954 221.2 3.7e-58
NP_001018090 (OMIM: 136530,229070) follitropin sub ( 129)  954 221.2 3.7e-58
NP_000540 (OMIM: 188540,275100) thyrotropin subuni ( 138)  378 92.6   2e-19
XP_011540367 (OMIM: 188540,275100) PREDICTED: thyr ( 138)  378 92.6   2e-19
NP_000885 (OMIM: 152780,228300) lutropin subunit b ( 141)  310 77.5 7.5e-15
XP_011525277 (OMIM: 152780,228300) PREDICTED: lutr ( 157)  310 77.5 8.2e-15
NP_001305994 (OMIM: 608824) choriogonadotropin sub ( 151)  294 73.9 9.4e-14
NP_203695 (OMIM: 608823) choriogonadotropin subuni ( 155)  294 73.9 9.6e-14
NP_203696 (OMIM: 608824) choriogonadotropin subuni ( 163)  294 73.9   1e-13
NP_149439 (OMIM: 608827) chorionic gonadotropin, b ( 165)  294 73.9   1e-13
NP_149133 (OMIM: 608826) choriogonadotropin subuni ( 165)  294 73.9   1e-13
XP_016882991 (OMIM: 608826) PREDICTED: choriogonad ( 165)  294 73.9   1e-13
NP_000728 (OMIM: 118860) choriogonadotropin subuni ( 165)  294 73.9   1e-13
NP_149032 (OMIM: 608825) chorionic gonadotropin, b ( 165)  294 73.9   1e-13
XP_016881722 (OMIM: 608823) PREDICTED: choriogonad ( 173)  294 73.9 1.1e-13
XP_005258536 (OMIM: 608824) PREDICTED: choriogonad ( 181)  294 73.9 1.1e-13
NP_001264920 (OMIM: 188540,275100) thyrotropin sub (  93)  231 59.7 1.1e-09
NP_660154 (OMIM: 609652) glycoprotein hormone beta ( 130)  225 58.5 3.6e-09


>>NP_000501 (OMIM: 136530,229070) follitropin subunit be  (129 aa)
 initn: 954 init1: 954 opt: 954  Z-score: 1165.1  bits: 221.2 E(85289): 3.7e-58
Smith-Waterman score: 954; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS
               70        80        90       100       110       120

                
pF1KB7 YCSFGEMKE
       :::::::::
NP_000 YCSFGEMKE
                

>>NP_001018090 (OMIM: 136530,229070) follitropin subunit  (129 aa)
 initn: 954 init1: 954 opt: 954  Z-score: 1165.1  bits: 221.2 E(85289): 3.7e-58
Smith-Waterman score: 954; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)

               10        20        30        40        50        60
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLGPS
               70        80        90       100       110       120

                
pF1KB7 YCSFGEMKE
       :::::::::
NP_001 YCSFGEMKE
                

>>NP_000540 (OMIM: 188540,275100) thyrotropin subunit be  (138 aa)
 initn: 402 init1: 224 opt: 378  Z-score: 469.8  bits: 92.6 E(85289): 2e-19
Smith-Waterman score: 378; 40.2% identity (72.1% similar) in 122 aa overlap (4-123:7-126)

                  10        20        30        40        50       
pF1KB7    MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVY
             ....: . : .:.  . :  :. :. ::..:: .:..:::: :::::.:::.  
NP_000 MTALFLMSMLFGLTCGQAM--SFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDING
               10          20        30        40        50        

          60        70        80        90       100       110     
pF1KB7 KD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVR
       :   :     : .::.....:.::..:::  :.   ..:::: .:.::::..: .::  .
NP_000 KLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHE
       60        70        80        90       100       110        

         120               
pF1KB7 GLGPSYCSFGEMKE      
       ..  .::.            
NP_000 AIKTNYCTKPQKSYLVGFSV
      120       130        

>>XP_011540367 (OMIM: 188540,275100) PREDICTED: thyrotro  (138 aa)
 initn: 402 init1: 224 opt: 378  Z-score: 469.8  bits: 92.6 E(85289): 2e-19
Smith-Waterman score: 378; 40.2% identity (72.1% similar) in 122 aa overlap (4-123:7-126)

                  10        20        30        40        50       
pF1KB7    MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVY
             ....: . : .:.  . :  :. :. ::..:: .:..:::: :::::.:::.  
XP_011 MTALFLMSMLFGLTCGQAM--SFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDING
               10          20        30        40        50        

          60        70        80        90       100       110     
pF1KB7 KD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVR
       :   :     : .::.....:.::..:::  :.   ..:::: .:.::::..: .::  .
XP_011 KLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHE
       60        70        80        90       100       110        

         120               
pF1KB7 GLGPSYCSFGEMKE      
       ..  .::.            
XP_011 AIKTNYCTKPQKSYLVGFSV
      120       130        

>>NP_000885 (OMIM: 152780,228300) lutropin subunit beta   (141 aa)
 initn: 299 init1: 299 opt: 310  Z-score: 387.6  bits: 77.5 E(85289): 7.5e-15
Smith-Waterman score: 310; 37.4% identity (63.6% similar) in 107 aa overlap (21-127:29-135)

                       10        20        30        40        50  
pF1KB7         MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYT
                                   :.  :  .:.::: :  ::..::: ::::: :
NP_000 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB7 RDLVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC
          : .    :  : .::.... .:..:.::: . .: . ..::: .:.:: :  ...::
NP_000 MMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDC
               70        80        90       100       110       120

            120             
pF1KB7 TVRGLGPSYCSFGEMKE    
             :  :.  ..      
NP_000 GGPKDHPLTCDHPQLSGLLFL
              130       140 

>>XP_011525277 (OMIM: 152780,228300) PREDICTED: lutropin  (157 aa)
 initn: 299 init1: 299 opt: 310  Z-score: 386.9  bits: 77.5 E(85289): 8.2e-15
Smith-Waterman score: 310; 37.4% identity (63.6% similar) in 107 aa overlap (21-127:45-151)

                         10        20        30        40        50
pF1KB7           MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYC
                                     :.  :  .:.::: :  ::..::: :::::
XP_011 EAVSLSQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYC
           20        30        40        50        60        70    

               60        70        80        90       100       110
pF1KB7 YTRDLVYKDPARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDST
        :   : .    :  : .::.... .:..:.::: . .: . ..::: .:.:: :  ...
XP_011 PTMMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTS
           80        90       100       110       120       130    

              120             
pF1KB7 DCTVRGLGPSYCSFGEMKE    
       ::      :  :.  ..      
XP_011 DCGGPKDHPLTCDHPQLSGLLFL
          140       150       

>>NP_001305994 (OMIM: 608824) choriogonadotropin subunit  (151 aa)
 initn: 274 init1: 274 opt: 294  Z-score: 367.9  bits: 73.9 E(85289): 9.4e-14
Smith-Waterman score: 294; 38.5% identity (65.4% similar) in 104 aa overlap (21-122:15-116)

               10        20        30        40        50          
pF1KB7 MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVYKD-
                           :.  : :.:.::: :  ::..::: ::::: :   : .  
NP_001       MGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMTRVLQGV
                     10        20        30        40        50    

       60        70        80        90       100       110        
pF1KB7 -PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVRGLG
        :: :..  .:..... .:..:.::: . .. . .: :: .:.:. :  ..:::      
NP_001 LPALPQV--VCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDCGGPKDH
           60          70        80        90       100       110  

      120                                     
pF1KB7 PSYCSFGEMKE                            
       :  :                                   
NP_001 PLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
            120       130       140       150 

>>NP_203695 (OMIM: 608823) choriogonadotropin subunit be  (155 aa)
 initn: 274 init1: 274 opt: 294  Z-score: 367.7  bits: 73.9 E(85289): 9.6e-14
Smith-Waterman score: 294; 38.5% identity (65.4% similar) in 104 aa overlap (21-122:27-128)

                     10        20        30        40        50    
pF1KB7       MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRD
                                 :.  : :.:.::: :  ::..::: ::::: :  
NP_203 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB7 LVYKD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC
        : .   :: :..  .:..... .:..:.::: . .. . .: :: .:.:. :  ..:::
NP_203 RVLQGVLPALPQV--VCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
               70          80        90       100       110        

            120                             
pF1KB7 TVRGLGPSYCSFGEMKE                    
             :  :                           
NP_203 GGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP
      120       130       140       150     

>>NP_203696 (OMIM: 608824) choriogonadotropin subunit be  (163 aa)
 initn: 274 init1: 274 opt: 294  Z-score: 367.4  bits: 73.9 E(85289): 1e-13
Smith-Waterman score: 294; 38.5% identity (65.4% similar) in 104 aa overlap (21-122:27-128)

                     10        20        30        40        50    
pF1KB7       MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRD
                                 :.  : :.:.::: :  ::..::: ::::: :  
NP_203 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KB7 LVYKD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDC
        : .   :: :..  .:..... .:..:.::: . .. . .: :: .:.:. :  ..:::
NP_203 RVLQGVLPALPQV--VCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTTDC
               70          80        90       100       110        

            120                                     
pF1KB7 TVRGLGPSYCSFGEMKE                            
             :  :                                   
NP_203 GGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
      120       130       140       150       160   

>>NP_149439 (OMIM: 608827) chorionic gonadotropin, beta   (165 aa)
 initn: 274 init1: 274 opt: 294  Z-score: 367.3  bits: 73.9 E(85289): 1e-13
Smith-Waterman score: 294; 38.5% identity (65.4% similar) in 104 aa overlap (21-122:29-130)

                       10        20        30        40        50  
pF1KB7         MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYT
                                   :.  : :.:.::: :  ::..::: ::::: :
NP_149 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB7 RDLVYKD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDST
          : .   :: :..  .:..... .:..:.::: . .. . .: :: .:.:. :  ..:
NP_149 MTRVLQGVLPALPQV--VCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTT
               70          80        90       100       110        

              120                                     
pF1KB7 DCTVRGLGPSYCSFGEMKE                            
       ::      :  :                                   
NP_149 DCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
      120       130       140       150       160     




129 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:49:56 2016 done: Fri Nov  4 05:49:57 2016
 Total Scan time:  4.570 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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