Result of FASTA (omim) for pF1KB7188
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7188, 462 aa
  1>>>pF1KB7188 462 - 462 aa - 462 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3264+/-0.000323; mu= 13.8840+/- 0.020
 mean_var=108.0652+/-21.763, 0's: 0 Z-trim(118.2): 9  B-trim: 0 in 0/54
 Lambda= 0.123376
 statistics sampled from 31003 (31012) to 31003 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.364), width:  16
 Scan time:  9.450

The best scores are:                                      opt bits E(85289)
NP_000184 (OMIM: 142945,147250,269160,600725,61163 ( 462) 3084 559.5 6.6e-159
XP_011514782 (OMIM: 142945,147250,269160,600725,61 ( 375) 2422 441.7 1.7e-123
XP_011514781 (OMIM: 142945,147250,269160,600725,61 ( 375) 2422 441.7 1.7e-123
NP_002172 (OMIM: 112500,600726,607778) indian hedg ( 411) 1342 249.4 1.3e-65
NP_066382 (OMIM: 233420,605423,607080) desert hedg ( 396) 1206 225.2 2.5e-58
XP_016874869 (OMIM: 233420,605423,607080) PREDICTE ( 349)  823 157.0 7.4e-38
XP_016874870 (OMIM: 233420,605423,607080) PREDICTE ( 282)  746 143.2 8.4e-34
NP_001297391 (OMIM: 142945,147250,269160,600725,61 ( 179)  602 117.5 3.1e-26


>>NP_000184 (OMIM: 142945,147250,269160,600725,611638) s  (462 aa)
 initn: 3084 init1: 3084 opt: 3084  Z-score: 2973.9  bits: 559.5 E(85289): 6.6e-159
Smith-Waterman score: 3084; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KB7 MLLLARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLGASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLLLARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLGASG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 IHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 FLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGGALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGGALG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 PRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 ASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGA
              370       380       390       400       410       420

              430       440       450       460  
pF1KB7 ADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
       ::::::::::::::::::::::::::::::::::::::::::
NP_000 ADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
              430       440       450       460  

>>XP_011514782 (OMIM: 142945,147250,269160,600725,611638  (375 aa)
 initn: 2422 init1: 2422 opt: 2422  Z-score: 2338.3  bits: 441.7 E(85289): 1.7e-123
Smith-Waterman score: 2422; 99.5% identity (100.0% similar) in 364 aa overlap (99-462:12-375)

       70        80        90       100       110       120        
pF1KB7 NSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGW
                                     ..::::::::::::::::::::::::::::
XP_011                    MLSLFPSPGPGSSRCKDKLNALAISVMNQWPGVKLRVTEGW
                                  10        20        30        40 

      130       140       150       160       170       180        
pF1KB7 DEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAE
              50        60        70        80        90       100 

      190       200       210       220       230       240        
pF1KB7 NSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTFLDRDDGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTFLDRDDGA
             110       120       130       140       150       160 

      250       260       270       280       290       300        
pF1KB7 KKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGGALGPRALFASR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGGALGPRALFASR
             170       180       190       200       210       220 

      310       320       330       340       350       360        
pF1KB7 VRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVLASCYAVIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVLASCYAVIE
             230       240       250       260       270       280 

      370       380       390       400       410       420        
pF1KB7 EHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGAADAPGAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGAADAPGAGA
             290       300       310       320       330       340 

      430       440       450       460  
pF1KB7 TAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
       ::::::::::::::::::::::::::::::::::
XP_011 TAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
             350       360       370     

>>XP_011514781 (OMIM: 142945,147250,269160,600725,611638  (375 aa)
 initn: 2422 init1: 2422 opt: 2422  Z-score: 2338.3  bits: 441.7 E(85289): 1.7e-123
Smith-Waterman score: 2422; 99.5% identity (100.0% similar) in 364 aa overlap (99-462:12-375)

       70        80        90       100       110       120        
pF1KB7 NSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGW
                                     ..::::::::::::::::::::::::::::
XP_011                    MLSLFPSPGPGSSRCKDKLNALAISVMNQWPGVKLRVTEGW
                                  10        20        30        40 

      130       140       150       160       170       180        
pF1KB7 DEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAE
              50        60        70        80        90       100 

      190       200       210       220       230       240        
pF1KB7 NSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTFLDRDDGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTFLDRDDGA
             110       120       130       140       150       160 

      250       260       270       280       290       300        
pF1KB7 KKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGGALGPRALFASR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGGALGPRALFASR
             170       180       190       200       210       220 

      310       320       330       340       350       360        
pF1KB7 VRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVLASCYAVIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVLASCYAVIE
             230       240       250       260       270       280 

      370       380       390       400       410       420        
pF1KB7 EHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGAADAPGAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGAADAPGAGA
             290       300       310       320       330       340 

      430       440       450       460  
pF1KB7 TAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
       ::::::::::::::::::::::::::::::::::
XP_011 TAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
             350       360       370     

>>NP_002172 (OMIM: 112500,600726,607778) indian hedgehog  (411 aa)
 initn: 1657 init1: 1275 opt: 1342  Z-score: 1298.9  bits: 249.4 E(85289): 1.3e-65
Smith-Waterman score: 1583; 58.9% identity (74.2% similar) in 453 aa overlap (7-458:13-407)

                     10        20        30         40        50   
pF1KB7       MLLLARCLLLVLVSSLLVCSGLACGPGRGFG-KRRHPKKLTPLAYKQFIPNVAE
                   ::.:.:.  :.: .. .:::::  : .:: :.::.::::::: ::: :
NP_002 MSPARLRPRLHFCLVLLLL--LVVPAAWGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPE
               10          20        30        40        50        

            60        70        80        90       100       110   
pF1KB7 KTLGASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISV
       :::::::::::::.:.:::::::::::::::::::::::::::::::::::.::.:::::
NP_002 KTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISV
       60        70        80        90       100       110        

           120       130       140       150       160       170   
pF1KB7 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV
       ::::::::::::::::::::::::::::::::::::::::::.:::.:::::::::::::
NP_002 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV
      120       130       140       150       160       170        

           180       190       200       210       220       230   
pF1KB7 YYESKAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRL
       :::::::.:::::.:.:.:::.:::::..: :.::.:.   .. . :::::::  ..:  
NP_002 YYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSP
      180       190       200       210       220       230        

           240       250       260       270       280       290   
pF1KB7 LYSDFLTFLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGP
        .:: : ::::.    ..: ::::..: .:: :: :::::.:   :. : :: :      
NP_002 TFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLLFTA---DNHT-EPAARF----
      240       250       260       270       280           290    

           300       310       320       330       340       350   
pF1KB7 PSGGALGPRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGT
               :: :::.:.::: : .::   :   : :: : .:. .. : ::::::: .::
NP_002 --------RATFASHVQPGQYV-LVAGVPG---LQPARVAAVS-THVALGAYAPLTKHGT
                      300        310          320        330       

           360       370       380       390       400       410   
pF1KB7 ILINRVLASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRV
       .... :.:::.:.. .:  :. :: :.:: :.:                           
NP_002 LVVEDVVASCFAAVADHHLAQLAFWPLRLFHSL---------------------------
       340       350       360       370                           

           420       430       440       450       460  
pF1KB7 ALTAPGAADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
          : :.  .::     :.::: ::::..:  ::.  ..:::::.    
NP_002 ---AWGSW-TPGE----GVHWYPQLLYRLGRLLLEEGSFHPLGMSGAGS
                      380       390       400       410 

>>NP_066382 (OMIM: 233420,605423,607080) desert hedgehog  (396 aa)
 initn: 1421 init1: 1126 opt: 1206  Z-score: 1168.3  bits: 225.2 E(85289): 2.5e-58
Smith-Waterman score: 1474; 54.4% identity (72.9% similar) in 450 aa overlap (1-447:1-395)

               10        20         30         40        50        
pF1KB7 MLLLARCLLLVLVSSLLVCSGLACGPGRG-FGKRRHPKK-LTPLAYKQFIPNVAEKTLGA
       : ::.  : :  .. ::.  . .::::::  :.::. .: :.:: ::::.:.: :.::::
NP_066 MALLTNLLPLCCLA-LLALPAQSCGPGRGPVGRRRYARKQLVPLLYKQFVPGVPERTLGA
               10         20        30        40        50         

       60        70        80        90       100       110        
pF1KB7 SGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWP
       ::  ::...:.::::..:.::::::::::::::.:::::::.:::...:::::.:::.::
NP_066 SGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWP
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB7 GVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESK
       ::.:::::::::::::...::::::::.:::::::::.:::.:::::::::::::::::.
NP_066 GVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESR
     120       130       140       150       160       170         

      180       190       200       210       220       230        
pF1KB7 AHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDF
        :.: ::::.::.:...::::::.:::.: .:  : ...:  :: ::::: .::.. .  
NP_066 NHVHVSVKADNSLAVRAGGCFPGNATVRLWSGERKGLRELHRGDWVLAADASGRVVPTPV
     180       190       200       210       220       230         

      240       250       260       270       280       290        
pF1KB7 LTFLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGP-PSGG
       : :::::   .  : ..::. : ..::::  ::.:.:                :: :. :
NP_066 LLFLDRDLQRRASFVAVETEWPPRKLLLTPWHLVFAA---------------RGPAPAPG
     240       250       260       270                      280    

       300       310       320       330       340       350       
pF1KB7 ALGPRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILIN
        ..:  .:: :.: :. : .     :   : :: :  :.  :::.:..:::::.::.:.:
NP_066 DFAP--VFARRLRAGDSVLA----PGGDALRPARVARVA-REEAVGVFAPLTAHGTLLVN
            290       300           310        320       330       

       360       370       380       390       400       410       
pF1KB7 RVLASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTA
        ::::::::.: :.::::::::.:: ::: : :                           
NP_066 DVLASCYAVLESHQWAHRAFAPLRLLHALGALL---------------------------
       340       350       360       370                           

       420       430       440       450       460  
pF1KB7 PGAADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
       ::.:  :     .:.::::.:::...  ::               
NP_066 PGGAVQP-----TGMHWYSRLLYRLAEELLG              
                   380       390                    

>>XP_016874869 (OMIM: 233420,605423,607080) PREDICTED: d  (349 aa)
 initn: 1050 init1: 807 opt: 823  Z-score: 800.6  bits: 157.0 E(85289): 7.4e-38
Smith-Waterman score: 1091; 52.5% identity (70.3% similar) in 354 aa overlap (95-447:50-348)

           70        80        90       100       110       120    
pF1KB7 KISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRV
                                     :: ..::::...:::::.:::.::::.:::
XP_016 SLPQVQASSRSFFSSSPLSPCRGLPRSAQGDR-YSQRCKERVNALAIAVMNMWPGVRLRV
      20        30        40        50         60        70        

          130       140       150       160       170       180    
pF1KB7 TEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCS
       ::::::::::...::::::::.:::::::::.:::.:::::::::::::::::. :.: :
XP_016 TEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESRNHVHVS
       80        90       100       110       120       130        

          190       200       210       220       230       240    
pF1KB7 VKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTFLDR
       :::.::.:...::::::.:::.: .:  : ...:  :: ::::: .::.. .  : ::::
XP_016 VKADNSLAVRAGGCFPGNATVRLWSGERKGLRELHRGDWVLAADASGRVVPTPVLLFLDR
      140       150       160       170       180       190        

          250       260       270       280       290        300   
pF1KB7 DDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGP-PSGGALGPRA
       :   .  : ..::. : ..::::  ::.:.:                :: :. : ..:  
XP_016 DLQRRASFVAVETEWPPRKLLLTPWHLVFAA---------------RGPAPAPGDFAP--
      200       210       220                      230       240   

           310       320       330       340       350       360   
pF1KB7 LFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVLASC
       .:: :.: :. : .     :   : :: :  :.  :::.:..:::::.::.:.: :::::
XP_016 VFARRLRAGDSVLA----PGGDALRPARVARVA-REEAVGVFAPLTAHGTLLVNDVLASC
             250           260       270        280       290      

           370       380       390       400       410       420   
pF1KB7 YAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGAADA
       :::.: :.::::::::.:: ::: : :                           ::.:  
XP_016 YAVLESHQWAHRAFAPLRLLHALGALL---------------------------PGGAVQ
        300       310       320                                    

           430       440       450       460  
pF1KB7 PGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
       :     .:.::::.:::...  ::               
XP_016 P-----TGMHWYSRLLYRLAEELLG              
     330            340                       

>>XP_016874870 (OMIM: 233420,605423,607080) PREDICTED: d  (282 aa)
 initn: 976 init1: 733 opt: 746  Z-score: 727.8  bits: 143.2 E(85289): 8.4e-34
Smith-Waterman score: 1014; 51.9% identity (69.0% similar) in 335 aa overlap (114-447:1-281)

            90       100       110       120       130       140   
pF1KB7 IIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEG
                                     ::.::::.:::::::::::::...::::::
XP_016                               MNMWPGVRLRVTEGWDEDGHHAQDSLHYEG
                                             10        20        30

           150       160       170       180       190       200   
pF1KB7 RAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAENSVAAKSGGCFPGSA
       ::.:::::::::.:::.:::::::::::::::::. :.: ::::.::.:...::::::.:
XP_016 RALDITTSDRDRNKYGLLARLAVEAGFDWVYYESRNHVHVSVKADNSLAVRAGGCFPGNA
               40        50        60        70        80        90

           210       220       230       240       250       260   
pF1KB7 TVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTFLDRDDGAKKVFYVIETREPRER
       ::.: .:  : ...:  :: ::::: .::.. .  : :::::   .  : ..::. : ..
XP_016 TVRLWSGERKGLRELHRGDWVLAADASGRVVPTPVLLFLDRDLQRRASFVAVETEWPPRK
              100       110       120       130       140       150

           270       280       290        300       310       320  
pF1KB7 LLLTAAHLLFVAPHNDSATGEPEASSGSGP-PSGGALGPRALFASRVRPGQRVYVVAERD
       ::::  ::.:.:                :: :. : ..:  .:: :.: :. : .     
XP_016 LLLTPWHLVFAA---------------RGPAPAPGDFAP--VFARRLRAGDSVLA----P
              160                      170         180             

            330       340       350       360       370       380  
pF1KB7 GDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVLASCYAVIEEHSWAHRAFAPFRL
       :   : :: :  :.  :::.:..:::::.::.:.: ::::::::.: :.::::::::.::
XP_016 GGDALRPARVARVA-REEAVGVFAPLTAHGTLLVNDVLASCYAVLESHQWAHRAFAPLRL
     190       200        210       220       230       240        

            390       400       410       420       430       440  
pF1KB7 AHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGAADAPGAGATAGIHWYSQLLYQI
        ::: : :                           ::.:  :     .:.::::.:::..
XP_016 LHALGALL---------------------------PGGAVQP-----TGMHWYSRLLYRL
      250                                  260            270      

            450       460  
pF1KB7 GTWLLDSEALHPLGMAVKSS
       .  ::               
XP_016 AEELLG              
        280                

>>NP_001297391 (OMIM: 142945,147250,269160,600725,611638  (179 aa)
 initn: 621 init1: 602 opt: 602  Z-score: 592.1  bits: 117.5 E(85289): 3.1e-26
Smith-Waterman score: 602; 97.8% identity (100.0% similar) in 89 aa overlap (99-187:12-100)

       70        80        90       100       110       120        
pF1KB7 NSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGVKLRVTEGW
                                     ..::::::::::::::::::::::::::::
NP_001                    MLSLFPSPGPGSSRCKDKLNALAISVMNQWPGVKLRVTEGW
                                  10        20        30        40 

      130       140       150       160       170       180        
pF1KB7 DEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_001 DEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKAG
              50        60        70        80        90       100 

      190       200       210       220       230       240        
pF1KB7 NSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLTFLDRDDGA
                                                                   
NP_001 KERKPLLRDTRYRASRGCSPAPPGRGADFSFRVDGAKSLCKMYAWWLLPASLMTKCISIP
             110       120       130       140       150       160 




462 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:43:45 2016 done: Fri Nov  4 05:43:47 2016
 Total Scan time:  9.450 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com