FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7121, 305 aa
  1>>>pF1KB7121 305 - 305 aa - 305 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1743+/-0.000287; mu= 12.1650+/- 0.018
 mean_var=82.3485+/-16.346, 0's: 0 Z-trim(118.8): 2  B-trim: 38 in 1/55
 Lambda= 0.141334
 statistics sampled from 32173 (32175) to 32173 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.377), width:  16
 Scan time:  8.530

The best scores are:                                      opt bits E(85289)
NP_694560 (OMIM: 613935) transmembrane protein 74  ( 305) 1998 416.5 3.4e-116


>>NP_694560 (OMIM: 613935) transmembrane protein 74 [Hom  (305 aa)
 initn: 1998 init1: 1998 opt: 1998  Z-score: 2207.0  bits: 416.5 E(85289): 3.4e-116
Smith-Waterman score: 1998; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KB7 MELHYLAKKSNQADLCDARDWSSRGLPGDQADTAATRAALCCQKQCASTPRATEMEGSKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 MELHYLAKKSNQADLCDARDWSSRGLPGDQADTAATRAALCCQKQCASTPRATEMEGSKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SSSPASPSSSLQNSTLQPDAFPPGLLHSGNNQITAERKVCNCCSQELETSFTYVDKNINL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 SSSPASPSSSLQNSTLQPDAFPPGLLHSGNNQITAERKVCNCCSQELETSFTYVDKNINL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQRNRSSPSAKGHNHPGELGWENPNEWSQEAAISLISEEEDDTSSEATSSGKSIDYGFIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 EQRNRSSPSAKGHNHPGELGWENPNEWSQEAAISLISEEEDDTSSEATSSGKSIDYGFIS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AILFLVTGILLVIISYIVPREVTVDPNTVAAREMERLEKESARLGAHLDRCVIAGLCLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 AILFLVTGILLVIISYIVPREVTVDPNTVAAREMERLEKESARLGAHLDRCVIAGLCLLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LGGVILSCLLMMSMWKGELYRRNRFASSKESAKLYGSFNFRMKTSTNENTLELSLVEEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 LGGVILSCLLMMSMWKGELYRRNRFASSKESAKLYGSFNFRMKTSTNENTLELSLVEEDA
              250       260       270       280       290       300

            
pF1KB7 LAVQS
       :::::
NP_694 LAVQS
            




305 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:57:34 2016 done: Fri Nov  4 04:57:36 2016
 Total Scan time:  8.530 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]