GENSCAN 1.0	Date run:  4-Nov-116	Time: 04:52:20

Sequence gi568815597f:34657331_34858149 : 200819 bp : 46.94% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   9138   9146    9  2  0   87   98     6 0.048   1.72
 1.02 Intr +  29039  29125   87  1  0   46   94   119 0.680   8.47
 1.03 Intr +  36146  36222   77  1  2   51   88    64 0.202   1.01
 1.04 Intr +  39485  39587  103  2  1   58   44    93 0.097   2.08
 1.05 Term +  48980  49120  141  1  0   84   49   104 0.825   4.03
 1.06 PlyA +  50417  50422    6                               1.05

 2.05 PlyA -  50573  50568    6                               1.05
 2.04 Term -  59162  58995  168  2  0   44   43   158 0.213   4.78
 2.03 Intr -  76589  76477  113  0  2   86   75    67 0.127   5.30
 2.02 Intr -  85279  85096  184  1  1   41   75   174 0.359  10.76
 2.01 Init -  90896  90843   54  2  0   89   72    44 0.331   4.21
 2.00 Prom -  94014  93975   40                              -2.26

 3.00 Prom +  96768  96807   40                              -5.46
 3.01 Init + 100001 100818  818  1  2   94   42  1026 0.346  92.79
 3.02 Intr + 101053 101187  135  1  0  107   49    45 0.273   2.18
 3.03 Intr + 103843 104711  869  1  2   42   94  1297 0.326 116.69
 3.04 Intr + 107899 108119  221  2  2   41   94    85 0.467   2.42
 3.05 Intr + 116863 116986  124  0  1   30   38   127 0.188   2.06
 3.06 Intr + 117072 117284  213  1  0   89   53    70 0.514   2.29
 3.07 Term + 127428 128245  818  1  2   33   47  1476 0.013 131.30
 3.08 PlyA + 129015 129020    6                               1.05

 4.00 Prom + 129995 130034   40                              -6.36
 4.01 Init + 130666 130722   57  0  0  100   55    26 0.141   1.60
 4.02 Intr + 135585 135738  154  2  1   98  101    35 0.421   5.45
 4.03 Term + 136867 137885 1019  2  2  128   44  1482 0.900 140.08
 4.04 PlyA + 138396 138401    6                               1.05

 5.06 PlyA - 138473 138468    6                              -3.24
 5.05 Term - 139030 138938   93  1  0   83   48    63 0.095  -0.37
 5.04 Intr - 140454 140341  114  0  0   95   80    33 0.092   3.84
 5.03 Intr - 141116 141041   76  1  1   49   78    68 0.019   1.42
 5.02 Intr - 166574 166487   88  0  1  114   77     1 0.171   0.63
 5.01 Init - 168525 168426  100  0  1   76   27   139 0.491   5.02
 5.00 Prom - 172116 172077   40                              -2.76

 6.06 PlyA - 174238 174233    6                               1.05
 6.05 Term - 174826 174650  177  1  0   96   44    75 0.364   1.59
 6.04 Intr - 185816 185687  130  1  1   48   86    29 0.201  -0.60
 6.03 Intr - 186437 186260  178  0  1   58   95   127 0.912   9.38
 6.02 Intr - 194356 194272   85  1  1   97   53    47 0.064   1.49
 6.01 Intr - 198652 198441  212  2  2  121   77   252 0.051  26.03

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  42844  42912   69  0  0   86   81    85 0.908   6.66
S.002 Sngl + 127433 128245  813  1  0  111   47  1456 0.982 139.58
S.003 Term - 198652 198369  284  2  2  121   39   342 0.939  28.19


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597f:34657331_34858149|GENSCAN_predicted_peptide_1|138_aa
MKQTLEVRSNYRRPTDEEIEAQRVELLKVTGKLQKQYLTATCGSERGTEKQGCPLRKSSS
TGSNGSYQPPSDMPFFLATATNSKAHLMWSEPEVAEWTKEVLNENSQVPEQNCAERLATG
LSQDVRGKKWMLEIFQRS

>gi568815597f:34657331_34858149|GENSCAN_predicted_CDS_1|417_bp
atgaagcagaccctagaagttaggtctaattatcgccgtcctacagatgaggaaatagag
gcccagagagttgaactgctcaaggtcaccgggaagctacagaagcaatacctgacagcc
acatgtggaagtgagcgtgggaccgagaagcaaggctgccctctgagaaagagttccagc
accgggtccaatgggagctaccagccaccttctgacatgcccttcttcttggccactgcg
accaactcaaaggcccacctgatgtggtctgaaccagaggtggcagaatggaccaaagaa
gttctaaatgagaattcacaggtgccagagcagaactgtgcagaacgtctggccacaggt
ctttcacaagacgttcggggcaaaaagtggatgttggagatcttccaaaggagttaa

>gi568815597f:34657331_34858149|GENSCAN_predicted_peptide_2|172_aa
MTLSDQAIASVKGPQGVQKMKAERWRWNGGLELVDFNEGVGLYPKSHGKFTEVPDLCLQK
DTSGYREAESPDKKLLQGSEPLWVSDGVYLGSGGGEDFKENGKKVWLGDLGEKRVEKQPS
LERIPGEEQTQAIRIFCMGDLADRCLGCFQVSPNYEVNYWVFRMSQVQRLAG

>gi568815597f:34657331_34858149|GENSCAN_predicted_CDS_2|519_bp
atgacgttgtcagaccaggccattgccagtgtgaagggacctcagggtgtccagaagatg
aaagcagagaggtggcggtggaatgggggcctggaacttgtcgacttcaatgaaggagtt
ggactttaccctaagagccatggaaagttcactgaagtccctgatttgtgtttgcagaaa
gatacctctggctatcgggaagcagaaagcccagacaagaagctgcttcaaggctcagag
ccactttgggtctctgatggagtctacctgggatcaggtggtggagaggacttcaaagaa
aatgggaagaaggtttggttaggggacttaggagagaagagagtggaaaagcagccatcc
ctggagaggatccctggagaggagcaaacccaggccatccggattttctgcatgggagac
ctggctgaccgctgcctgggctgctttcaagtctcaccgaattatgaagtcaactactgg
gtgtttagaatgtctcaagttcaaagactagcaggctag

>gi568815597f:34657331_34858149|GENSCAN_predicted_peptide_3|1065_aa
MNWSIFEGLLSGVNKYSTAFGRIWLSLVFIFRVLVYLVTAERVWSDDHKDFDCNTRQPGC
SNVCFDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREVQEKRHREAHGENSGRLYLNP
GKKRGGLWWTYVCSLVFKASVDIAFLYVFHSFYPKYILPPVVKCHADPCPNIVDCFISKP
SEKNIFTLFMVATAAICILLNLVELIYLVSKRCHECLAARKAQAMCTGHHPHGTTSSCKQ
DDLLSGDLIFLGSDSHPPLLPDRPRDHVKKTILMEIVRANAQGWREEGVHRRTHMRAPSS
CVAHCQNLIKVNSFAGSRPQGSQGLSGQVAPRYRPSTCSTQDTASMNWAFLQGLLSGVNK
YSTVLSRIWLSVVFIFRVLVYVVAAEEVWDDEQKDFVCNTKQPGCPNVCYDEFFPVSHVR
LWALQLILVTCPSLLVVMHVAYREERERKHHLKHGPNAPSLYDNLSKKRGGLWWTYLLSL
IFKAAVDAGFLYIFHRLYKDYDMPRVVACSVEPCPHTVDCYISRPTEKKVFTYFMVTTAA
ICILLNLSEVFYLVGKRCMEIFGPRHRRPRCRECLPDTCPPYVLSQGGHPEDGNSVLMKA
GSAPVDAEKRTATKLMAHWGSWGEREEDLTSRHPEKGSLRHLEKEDFAKQGGGIPDRGDS
LCKGRVYLVTKMERTQELLGQRQRGWEQYGPTAQIQSKLYALKSIAITSSAQDQGTKSSH
MAAQTTAKQRASSHPEGGKKLDEDRQTTASHATDLTPEHQGFLPGGRKEGGKMRLSQKRL
PGGGQLVREELLEGAMDWKTLQALLSGVNKYSTAFGRIWLSVVFVFRVLVYVVAAERVWG
DEQKDFDCNTKQPGCTNVCYDNYFPISNIRLWALQLIFVTCPSLLVILHVAYREERERRH
RQKHGDQCAKLYDNAGKKHGGLWWTYLFSLIFKLIIEFLFLYLLHTLWHGFNMPRLVQCA
NVAPCPNIVDCYIARPTEKKIFTYFMVGASAVCIVLTICELCYLICHRVLRGLHKDKPRG
GCSPSSSASRASTCRCHHKLVEAGEVDPDPGNNKLQASAPNLTPI

>gi568815597f:34657331_34858149|GENSCAN_predicted_CDS_3|3198_bp
atgaactggagtatctttgagggactcctgagtggggtcaacaagtactccacagccttt
gggcgcatctggctgtctctggtcttcatcttccgcgtgctggtgtacctggtgacggcc
gagcgtgtgtggagtgatgaccacaaggacttcgactgcaatactcgccagcccggctgc
tccaacgtctgctttgatgagttcttccctgtgtcccatgtgcgcctctgggccctgcag
cttatcctggtgacatgcccctcactgctcgtggtcatgcacgtggcctaccgggaggtt
caggagaagaggcaccgagaagcccatggggagaacagtgggcgcctctacctgaacccc
ggcaagaagcggggtgggctctggtggacatatgtctgcagcctagtgttcaaggcgagc
gtggacatcgcctttctctatgtgttccactcattctaccccaaatatatcctccctcct
gtggtcaagtgccacgcagatccatgtcccaatatagtggactgcttcatctccaagccc
tcagagaagaacattttcaccctcttcatggtggccacagctgccatctgcatcctgctc
aacctcgtggagctcatctacctggtgagcaagagatgccacgagtgcctggcagcaagg
aaagctcaagccatgtgcacaggtcatcacccccacggtaccacctcttcctgcaaacaa
gacgacctcctttcgggtgacctcatctttctgggctcagacagtcatcctcctctctta
ccagaccgcccccgagaccatgtgaagaaaaccatcttaatggaaatagtgagggccaat
gcccagggttggagggaggagggcgttcatagaagaacacacatgcgggcaccttcatcg
tgtgtggcccactgtcagaacttaataaaagtcaactcatttgctggttccaggcctcaa
ggctcccaaggcctgagtgggcaggtagcacccaggtatagaccttccacgtgcagcacc
caggacacagccagcatgaactgggcatttctgcagggcctgctgagtggcgtgaacaag
tactccacagtgctgagccgcatctggctgtctgtggtgttcatctttcgtgtgctggtg
tacgtggtggcagcggaggaggtgtgggacgatgagcagaaggactttgtctgcaacacc
aagcagcccggctgccccaacgtctgctatgacgagttcttccccgtgtcccacgtgcgc
ctctgggccctacagctcatcctggtcacgtgcccctcactgctcgtggtcatgcacgtg
gcctaccgcgaggaacgcgagcgcaagcaccacctgaaacacgggcccaatgccccgtcc
ctgtacgacaacctgagcaagaagcggggcggactgtggtggacgtacttgctgagcctc
atcttcaaggccgccgtggatgctggcttcctctatatcttccaccgcctctacaaggat
tatgacatgccccgcgtggtggcctgctccgtggagccttgcccccacactgtggactgt
tacatctcccggcccacggagaagaaggtcttcacctacttcatggtgaccacagctgcc
atctgcatcctgctcaacctcagtgaagtcttctacctggtgggcaagaggtgcatggag
atcttcggccccaggcaccggcggcctcggtgccgggaatgcctacccgatacgtgccca
ccatatgtcctctcccagggagggcaccctgaggatgggaactctgtcctaatgaaggct
gggtcggccccagtggatgcagagaagaggacagctaccaaactcatggcgcactgggga
agctggggagagagggaagaggatctaacatccaggcatccagaaaaaggctccctgaga
catctagagaaggaggattttgccaagcaaggaggcggaattccagacagaggggatagc
ttatgcaaagggagagtatacctggtgacaaagatggaaagaacccaggagctcttgggc
cagagacagcgaggctgggaacaatatggccctacagctcagatacaatctaagctctac
gccctgaaatccattgccatcacctcttcagcccaggatcaaggcaccaaaagctcccac
atggcagctcaaaccacagccaagcaaagagcctcctcccatccagaaggagggaagaag
ctggatgaggacagacagactactgccagccacgcaactgacttgacccctgagcaccag
ggattcttacctggtggcaggaaggagggaggaaaaatgaggctcagccaaaaaaggctt
cctggaggagggcagctggtcagggaggaacttctggagggcgccatggactggaagaca
ctccaggccctactgagcggtgtgaacaagtactccacagcgttcgggcgcatctggctg
tccgtggtgttcgtcttccgggtgctggtatacgtggtggctgcagagcgcgtgtggggg
gatgagcagaaggactttgactgcaacaccaagcagcccggctgcaccaacgtctgctac
gacaactacttccccatctccaacatccgcctctgggccctgcagctcatcttcgtcaca
tgcccctcgctgctggtcatcctgcacgtggcctaccgtgaggagcgggagcgccggcac
cgccagaaacacggggaccagtgcgccaagctgtacgacaacgcaggcaagaagcacgga
ggcctgtggtggacctacctgttcagcctcatcttcaagctcatcattgagttcctcttc
ctctacctgctgcacactctctggcatggcttcaatatgccgcgcctggtgcagtgtgcc
aacgtggccccctgccccaacatcgtggactgctacattgcccgacctaccgagaagaaa
atcttcacctacttcatggtgggcgcctccgccgtctgcatcgtactcaccatctgtgag
ctctgctacctcatctgccacagggtcctgcgaggcctgcacaaggacaagcctcgaggg
ggttgcagcccctcgtcctccgccagccgagcttccacctgccgctgccaccacaagctg
gtggaggctggggaggtggatccagacccaggcaataacaagctgcaggcttcagcaccc
aacctgacccccatctga

>gi568815597f:34657331_34858149|GENSCAN_predicted_peptide_4|409_aa
MHSSIFLGGSGCLAKGGLERPPPSPSRFLPPPRPSALFKAPPPLVRSSRAPAGVTPAIVP
TSTWAARQAGDGGPGAMGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESV
WGDEQSDFECNTAQPGCTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREE
RLRQKEGELRALPAKDPQVERALAAVERQMAKISVAEDGRLRIRGALMGTYVASVLCKSV
LEAGFLYGQWRLYGWTMEPVFVCQRAPCPYLVDCFVSRPTEKTIFIIFMLVVGLISLVLN
LLELVHLLCRCLSRGMRARQGQDAPPTQGTSSDPYTDQVFFYLPVGQGPSSPPCPTYNGL
SSSEQNWANLTTEERLASSRPPLFLDPPPQNGQKPPSRPSSSASKKQYV

>gi568815597f:34657331_34858149|GENSCAN_predicted_CDS_4|1230_bp
atgcattccagcatcttcctgggtggttctggctgcctggccaagggtggcttggagcgc
ccgccgccctccccgtcgcgtttcctgcccccaccccgcccctctgcgctatttaaggcg
cccccgccgctcgtgcggtccagcagggctcccgcgggcgtcactccggccatcgtcccc
acctccacctgggccgcccggcaggcaggcgacggaggcccgggagccatgggtgactgg
ggcttcctggagaagttgctggaccaggtccaggagcactcgaccgtggtgggtaagatc
tggctgacggtgctcttcatcttccgcatcctcatcctgggcctggccggcgagtcagtg
tggggtgacgagcaatcagatttcgagtgtaacacggcccagccaggctgcaccaacgtc
tgctatgaccaggccttccccatctcccacatccgctactgggtgctgcagttcctcttc
gtcagcacacccaccctggtctacctgggccatgtcatttacctgtctcggcgagaagag
cggctgcggcagaaggagggggagctgcgggcactgccggccaaggacccacaggtggag
cgggcgctggcggccgtagagcgtcagatggccaagatctcggtggcagaagatggtcgc
ctgcgcatccgcggagcactgatgggcacctatgtcgccagtgtgctctgcaagagtgtg
ctagaggcaggcttcctctatggccagtggcgcctgtacggctggaccatggagcccgtg
tttgtgtgccagcgagcaccctgcccctacctcgtggactgctttgtctctcgccccacg
gagaagaccatcttcatcatcttcatgttggtggttggactcatctccctggtgcttaac
ctgctggagttggtgcacctgctgtgtcgctgcctcagccgggggatgagggcacggcaa
ggccaagacgcacccccgacccagggcacctcctcagacccttacacggaccaggtcttc
ttctacctccccgtgggccaggggccctcatccccaccatgccccacctacaatgggctc
tcatccagtgagcagaactgggccaacctgaccacagaggagaggctggcgtcttccagg
ccccctctcttcctggacccaccccctcagaatggccaaaaacccccaagtcgtcccagc
agctctgcttctaagaagcagtatgtatag

>gi568815597f:34657331_34858149|GENSCAN_predicted_peptide_5|156_aa
MTSGASLVLALPLQPHLAARPVHAYQCLCLLSMGSESSIASSLSSSKQRAWRRHHGLNYL
VKSDITKEMPASNKPSILQSPVPDQCLEPICACVCVAASLGPNLSCQRSKFLSPSLTPAL
TPSSEWPLWLIGKIQSLPLLYIAIVLTEVWVHGEQI

>gi568815597f:34657331_34858149|GENSCAN_predicted_CDS_5|471_bp
atgacctccggggccagcctggtcctggccctgcctctgcagccccacctggcagccagg
cctgtccatgcttatcagtgcctgtgtttgctcagcatggggtctgagtcctccattgca
tcctctttatcctccagcaaacagagagcatggagaaggcaccacggccttaactacctt
gtgaagagtgacatcaccaaggagatgcctgcgtccaacaaacctagcattctccagagc
cccgtgcctgaccagtgcttggagcccatatgtgcttgtgtttgtgtggccgccagtcta
ggacccaacttgtcttgccaaaggtccaagttcctgagccccagcctgaccccggctctg
acaccaagctcagagtggcctttgtggctcattggcaagattcagtctcttccacttctg
tacattgccattgtcctcactgaggtctgggtgcatggagagcagatatga

>gi568815597f:34657331_34858149|GENSCAN_predicted_peptide_6|260_aa
XVMWPVFWTVVRTYAPYVTFPVAFVVGAVGYHLEWFIRGKDPQPVEEEKSISERREDRKL
DELLGKDHTQVTLSCACCCVSTSRLGSCQNKPAREPFDSAVLLRFAFCNTEEAEGIVIIG
SGKINLKGDLMSICKPIEGYHSGQSDRRTRGNGFSMQQRPFGLCHCLEGLQKTRGCQQRL
LDTEYTIVLNWQHPMVWGGKWWLKKLRLRELTIVSQGHTAMWQIRAWTPASLLHNQALAP
ADYGVSCPCPLAVEAAGEQG

>gi568815597f:34657331_34858149|GENSCAN_predicted_CDS_6|783_bp
natgtcatgtggcctgtgttttggaccgtggttcgtacctatgctccttatgtcacattc
cctgttgccttcgtggtcggggctgtgggttaccacctggaatggttcatcaggggaaag
gacccccagcccgtggaggaggaaaagagcatctcagagcgccgggaggatcgcaagctg
gatgagcttctaggcaaggaccacacgcaggtgactctttcctgtgcctgttgctgtgtt
agcacaagtcggctgggcagctgccagaacaagcctgccagggagccttttgactctgct
gtcttgcttcgctttgctttttgtaacacggaggaagctgaaggcattgtgattatcggc
tccgggaagataaacttgaagggtgacttaatgagcatttgtaaacctatcgaaggttat
cattcagggcagagtgaccggcggacacgcggaaatgggtttagtatgcagcaaaggcct
tttgggctctgccattgtctggaggggctgcaaaagactaggggctgccagcagaggctt
ttggacacagaatacactattgtgctgaactggcagcaccccatggtgtggggaggaaag
tggtggctgaagaaactgaggctcagagaattaactattgtttctcaaggtcacacagcc
atgtggcagatccgggcctggactccggcatccctgcttcacaaccaggccctggcacct
gctgattacggagtgtcctgcccctgccctctggctgtggaggcagctggggagcagggc
tga