GENSCAN 1.0	Date run:  4-Nov-116	Time: 04:50:45

Sequence gi568815587r:78073775_78274554 : 200780 bp : 45.79% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init -   5970   5805  166  0  1   94  105   288 0.952  29.19
 1.00 Prom -  16916  16877   40                              -4.06

 2.00 Prom +  28295  28334   40                              -4.96
 2.01 Init +  62939  62975   37  1  1   69  101    37 0.900   3.27
 2.02 Intr +  65696  65800  105  0  0   59   42    99 0.765   2.59
 2.03 Intr +  67821  67928  108  1  0   42   93   215 0.947  17.66
 2.04 Term +  74152  74162   11  2  2  106   54     0 0.213  -3.24
 2.05 PlyA +  79225  79230    6                               1.05

 3.04 PlyA -  79706  79701    6                               1.05
 3.03 Term -  95457  95319  139  2  1   93   43    43 0.216  -2.26
 3.02 Intr -  96839  96750   90  1  0   54  100    42 0.571   1.11
 3.01 Init - 100780 100002  779  1  2   68   98  1312 0.876 123.17
 3.00 Prom - 101711 101672   40                              -1.86

 4.00 Prom + 102321 102360   40                              -6.26
 4.01 Init + 103036 103097   62  0  2  116   37   105 0.914   8.92
 4.02 Intr + 104678 104777  100  2  1   55   67    60 0.209   0.71
 4.03 Intr + 109367 109424   58  1  1   49  113    57 0.021   2.76
 4.04 Term + 112732 112814   83  2  2   50   39    88 0.003  -2.04
 4.05 PlyA + 113371 113376    6                              -0.45

 5.00 Prom + 113883 113922   40                              -4.26
 5.01 Init + 118769 118941  173  1  2   98   43   148 0.976   8.21
 5.02 Intr + 122462 123144  683  2  2  144   96  1216 0.964 119.23
 5.03 Intr + 124162 124294  133  2  1  105   75   209 0.990  21.00
 5.04 Intr + 125821 125950  130  1  1   86   81   154 0.969  15.20
 5.05 Intr + 126359 126460  102  1  0   43   95   136 0.920  10.17
 5.06 Intr + 126876 127034  159  2  0   80  105   186 0.921  19.68
 5.07 Intr + 132068 132261  194  1  2  119   30   255 0.991  21.09
 5.08 Intr + 133756 133849   94  1  1   45  109    54 0.517   3.17
 5.09 Intr + 135083 135189  107  1  2   94   99   143 0.999  15.01
 5.10 Intr + 135674 136970 1297  2  1   85   99  1513 0.765 139.40
 5.11 Intr + 139872 140001  130  2  1   97   38   120 0.702   8.17
 5.12 Term + 141204 141277   74  1  2  106   43    95 0.941   4.87
 5.13 PlyA + 141436 141441    6                               1.05

 6.11 PlyA - 141548 141543    6                               1.05
 6.10 Term - 145641 145498  144  0  0  100   45   264 0.970  21.21
 6.09 Intr - 146670 146545  126  0  0   84   46    98 0.962   6.08
 6.08 Intr - 148005 147903  103  2  1   84  101   125 0.993  13.58
 6.07 Intr - 148421 148331   91  0  1   84  108    92 0.999   9.85
 6.06 Intr - 149902 149638  265  1  1   93  115   342 0.999  34.49
 6.05 Intr - 151428 151334   95  1  2   75  105    87 0.990   8.78
 6.04 Intr - 153277 152691  587  0  2  141   78   439 0.938  40.49
 6.03 Intr - 158655 158569   87  2  0   84   76    27 0.163   0.19
 6.02 Intr - 176575 176383  193  2  1   92   97   128 0.466  12.65
 6.01 Init - 197098 197056   43  1  1   61  103    48 0.034   2.22

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +   9722   9758   37  1  1   92  110    49 0.861   7.70
S.002 Intr - 115045 114799  247  2  1   60   90   121 0.856   6.02
S.003 Intr - 115277 115118  160  2  1  106   92    41 0.868   5.86
S.004 Init - 117751 117746    6  1  0  123   92     0 0.880   4.77


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:78073775_78274554|GENSCAN_predicted_peptide_1|56_aa
MIARRNPEPLRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATAX

>gi568815587r:78073775_78274554|GENSCAN_predicted_CDS_1|168_bp
atgatcgcacggcggaacccagaacccttacggtttctgccggatgaggcccggagcctg
cccccgcccaagctgaccgacccgcggctcctctacatcggcttcttgggctactgctcc
ggcctgattgataacctaatccggcggaggccgatcgcgacggctgnn

>gi568815587r:78073775_78274554|GENSCAN_predicted_peptide_2|86_aa
MAQLDVIDGIFQSPGRASPLLCGDEKAFEKSHPERQSRKPIASTRGNSTVKWAAEDDDDD
DLDTEKQKTNEDDQTAKKDKLKEGEK

>gi568815587r:78073775_78274554|GENSCAN_predicted_CDS_2|261_bp
atggctcaactagatgtcatagatggcatcttccaatcccctggccgtgcgagtccctta
ctatgtggggatgagaaggcatttgagaagagtcaccccgagcgccaaagccgaaaacca
attgccagtacccgtggcaattctacagtcaaatgggcagctgaagatgatgatgatgat
gatcttgacaccgagaagcagaagaccaatgaagatgaccagacagcaaaaaaggataag
ttaaaagaaggtgaaaaatga

>gi568815587r:78073775_78274554|GENSCAN_predicted_peptide_3|335_aa
MSDPITLNVGGKLYTTSLATLTSFPDSMLGAMFSGKMPTKRDSQGNCFIDRDGKVFRYIL
NFLRTSHLDLPEDFQEMGLLRREADFYQVQPLIEALQEKEVELSKAEKNAMLNITLNQRV
QTVHFTVREAPQIYSLSSSSMEVFNANIFSTSCLFLKLLGSKLFYCSNGNLSSITSHLQD
PNHLTLDWVANVEGLPEEEYTKQNLKRLWVVPANKQINSFQVFVEEVLKIALSDGFCIDS
SHPHALDFMNNKIIRLIRYRLGELSLLLGKSMRKTENKRSAVMAAPSTDGGLWADGGGWL
GNVACDQLQEQNNPDNRPIKGRDESLAALSAQTAW

>gi568815587r:78073775_78274554|GENSCAN_predicted_CDS_3|1008_bp
atgtccgaccccatcacgctgaacgtcggggggaagctctatacaacctcactggcgacc
ctgaccagcttccctgactccatgctaggcgccatgttcagcgggaagatgcccaccaag
agggacagccagggcaactgcttcattgaccgtgacggcaaagtgttccgctatatcctc
aacttcctgcggacctcccaccttgacctgcctgaggacttccaggagatggggctgctc
cgcagggaggccgacttctaccaggtgcagcccctgattgaggccctgcaggagaaggaa
gtggagctctccaaggccgagaagaatgccatgctcaacatcacactgaaccagcgtgtg
cagacggtccacttcactgtgcgcgaggcaccccagatctacagcctctcctcttccagc
atggaggtcttcaacgccaacatcttcagcacctcctgcctcttcctcaagctccttggc
tctaagctcttctactgctccaatggcaatctctcctccatcaccagccacttgcaggac
cccaaccacctgactctggactgggtggccaatgtggagggcctgccagaggaggagtac
accaagcagaacctcaagaggctctgggtggtgcccgccaacaagcagatcaacagcttc
caggtcttcgtggaagaggtactgaaaatcgctctgagcgatggcttctgcatcgattct
tctcacccacatgctctggattttatgaacaataagattattcgattaatacggtacagg
ttaggtgaactcagccttctgcttggcaaaagcatgagaaagacggagaacaaacgttca
gcagtgatggcagcaccatcgacagacggggggctctgggctgatgggggtggctggctg
ggaaacgtggcctgtgatcagctccaggagcaaaacaaccctgataacaggcccatcaaa
gggagggacgagagtctggcagctctgtctgcccagacagcctggtga

>gi568815587r:78073775_78274554|GENSCAN_predicted_peptide_4|100_aa
MTKSCLYNNNNNNNNNNNKAGATVSIITNPRPCYKRQNDMTRGEFHESAEVCSQKPGLPG
ETDDSWTFTGKVQAVQPWARSWADDDDHNNNKHYNGNNNG

>gi568815587r:78073775_78274554|GENSCAN_predicted_CDS_4|303_bp
atgacgaaatcctgtctctacaacaacaacaacaacaacaacaacaacaacaacaaagca
ggggccacagtgtccatcatcacaaatccacggccctgctacaaaaggcaaaatgacatg
acacgaggggagtttcatgagtcggcggaggtttgcagtcagaaaccagggcttcctgga
gaaactgatgattcctggactttcacaggaaaagttcaagctgtgcagccctgggcacgt
tcctgggcagatgatgatgatcataacaacaacaaacactacaacggcaataataatggc
taa

>gi568815587r:78073775_78274554|GENSCAN_predicted_peptide_5|1091_aa
MVTAVLRLPAWELGQVGRACLLWPGYGLSRGCRLALEIRALMEQLYLNCQLPGLCGVSAG
AMDKILEAVVTSSYPVSVKQGLVRRVLEAARQPLEREQCLALLALGARLYVGGAEELPRR
VGCQLLHVAGRHHPDVFAEFFSARRVLRLLQGGAGPPGPRALACVQLGLQLLPEGPAADE
VFALLRREVLRTVCERPGPAACAQVARLLARHPRCVPDGPHRLLFCQQLVRCLGRFRCPA
EGEEGAVEFLEQAQQVSGLLAQLWRAQPAAILPCLKELFAVISCAEEEPPSSALASVVQH
LPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKKF
SILIEVSLTKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPPMVASLV
KEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAWT
SQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSILQALFMASDFRHCVLRLTENNSQP
LMTKLQWLFGFLEHSQRPAISPENFLSASWTPWFSPGTQQDCSEYLKYLLDRLHEEEKTG
TRICQKLKQSSSPSPPEEPPAPSSTSVEKMFGGKIVTRICCLCCLNVSSREEAFTDLSLA
FPPPERCRRRRLGSVMRPTEDITARELPPPTSAQGPGRVGPRRQRKHCITEDTPPTSLYI
EGLDSKEAGGQSSQEERIEREEEGKEERTEKEEVGEEEESTRGEGEREKEEEVEEEEEKV
EKETEKEAEQEKEEDSLGAGTHPDAAIPSGERTCGSEGSRSVLDLVNYFLSPEKLTAENR
YYCESCASLQDAEKVVELSQGPCYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPLAG
GRGQAYDLCSVVVHSGVSSESGHYYCYAREGAARPAASLGTADRPEPENQWYLFNDTRVS
FSSFESVSNVTSFFPKDTAYVLFYRQRPREGPEAELGSSRVRTEPTLHKDLMEAISKDNI
LYLQEQEKEARSRAAYISALPTSPHWGRGFDEDKDEDEGSPGGCNPAGAACCDGGVEFGP
NVTDPQDVTSK

>gi568815587r:78073775_78274554|GENSCAN_predicted_CDS_5|3276_bp
atggtgacagctgtcctcagactgcctgcgtgggagttggggcaggtgggcagggcttgc
ttgctgtggccaggctacggactgagcagaggctgccggctggccttggagatcagagct
ctcatggagcagctctatttgaactgtcagctgccaggcttatgtggtgttagcgcgggc
gccatggacaagatcttggaggcggtggtgacgtcgtcatacccggtcagcgtgaagcag
gggctggttcggcgcgtgctggaggcggcgcggcagccgctggagcgtgagcagtgcctg
gcgctgctggcgctgggcgcgcgcctctacgtgggcggcgcggaggagctgccgcgccgc
gtgggctgccagctgctgcacgtggccggccgccaccaccccgacgtcttcgccgagttc
ttcagcgcgcgtcgcgtgctgcgcctgctgcagggtggcgccggccccccgggcccccgc
gcgctcgcctgcgtgcagctgggtctgcagctgctgcccgaggggcctgcggccgacgag
gtgttcgcgctgctgcggcgcgaggtgctgcgcaccgtgtgcgagcgcccgggccccgcg
gcctgcgcgcaggtggcacggctgctggctcgccacccgcgctgtgtgcccgacggaccc
caccgcctgctcttctgccagcagctggtgcgttgcctcggccgcttccgctgcccagcc
gaaggcgaggagggcgccgtggagttcctagagcaggcccagcaggtgagcgggctcctg
gcgcagctgtggcgcgcacagcccgccgccatcctgccctgcctcaaagagctgttcgca
gtcatctcctgcgcagaggaggagccaccatctagcgccctggccagcgtggtccagcac
ctcccattggagctcatggatggtgttgtccggaacctcagcaatgatgacagtgtgaca
gactcgcagatgctgactgccattagcaggatgattgactgggtgtcctggcccctgggg
aagaatattgacaagtggatcattgcactgctgaagggcctggctgctgttaagaagttc
agcatcttgatcgaggtttcgctcaccaaaattgagaaggttttctctaagctgctgtac
cccatcgtccggggagctgccttgtctgtgctcaagtacatgctcctgaccttccagcac
tcccacgaagccttccacctgctcctccctcacatcccccccatggtggcctctctggtc
aaggaggactcgaactcggggaccagctgcctggagcagctggcggagctggtccactgc
atggtgttccggttcccgggcttcccggatctgtatgagcctgtcatggaggccatcaag
gacctccatgttcccaatgaggaccgcatcaagcagctgctggggcaggatgcctggact
tcgcagaagagcgagctggcgggtttctatccccggctcatggccaagtcagacacgggc
aagattggtctcatcaacctgggcaacacatgctatgtcaacagcatccttcaggcctta
ttcatggcgtctgacttcagacattgtgtgctccgcttgactgagaacaactcacagccc
ctgatgaccaagctgcagtggctctttggcttcctagaacacagccagcggcctgccatt
tccccagagaacttcctctccgcatcctggacgccctggttcagccctggcacccagcag
gactgctcggagtatctgaagtacctgctggatcggctgcacgaagaggagaaaacgggc
acaaggatctgccagaaactcaagcagtccagctcgccctctccgcccgaggagcccccg
gccccaagttcaacctctgtggaaaaaatgtttggaggcaagatagtgactcggatctgc
tgtctctgctgcctcaacgtctcctcccgggaggaggccttcacggacctctctctcgcc
ttccctcctcctgagcgctgtcgccgccgccgcctgggctctgtgatgcgccccacagaa
gacatcacagcccgggagttgcccccaccaaccagtgcacaggggccaggcagggtgggt
cctcggaggcaaaggaaacactgcatcacagaggacaccccccccaccagcctgtacatc
gaaggcctggactccaaggaagctggtgggcagagcagtcaggaggaaaggatagagagg
gaggaagaagggaaggaggagagaacggagaaggaagaagtgggggaggaggaggaaagc
accagaggggaaggagagagggagaaagaggaggaggtggaagaggaagaagagaaggtg
gagaaggagacagaaaaggaggctgagcaggaaaaggaagaagacagcctgggagcgggg
acccacccggatgctgccatcccctccggggagcggacatgtggctctgagggctcccgc
tccgtcctggacctggttaactacttcctgtcccccgagaagctgacagcagaaaaccgc
tactactgcgagtcgtgtgcctccctgcaggatgccgagaaggtggtggagctgagccaa
gggccgtgctacctcatcctcacactgctgcgcttctctttcgacctgcgcaccatgcgg
cgccgcaagatcctggatgacgtctccatccccctgctgctccgcctgccactggctggt
ggccgtggccaggcctatgacctctgcagtgtggtggtgcactctggagtgtcttcggag
agtggtcactactactgctatgcccgtgagggcgctgcccgccctgccgcttctctggga
actgccgataggccagagcccgagaaccagtggtacctgttcaatgacactcgggtgtcc
ttctcttccttcgaatctgtcagcaacgtcacctccttcttccctaaggacacagcctat
gtgctgttttaccggcagcggcccagggaggggcccgaggctgagttgggctcttctaga
gtccggacagagcccaccctgcacaaggacttgatggaagccatttccaaagacaacatc
ctttacctacaggagcaggagaaggaggcccggagcagggcggcctacatctctgcactc
cccacatctccgcactgggggaggggctttgatgaagacaaggatgaggatgaaggctct
ccagggggctgcaatcctgcaggggctgcctgctgtgatggtggtgtggagtttgggccc
aatgtcacagaccctcaagatgtcacatctaagtga

>gi568815587r:78073775_78274554|GENSCAN_predicted_peptide_6|577_aa
MEMMLLTALLGGCTAELSSSSQHLLRERKSSAPSHSSQPTLFTFEPPVSNHMQPTLSTSA
PQEYLYLHQCISRRAENASLWGLIPDSSQCLSSYFKKAVKPVTDDTLMSASFSQGTRASF
LMRSDTAVQKLAQGNGHCVNGISGQVHGFYSLPKPSRHNTEFRDSTYDLPRSLASHGHTK
GSLTGSETDNEDVYTFKTPSNTLCREFGDLLVDNMDVPATPLSAYQIPRTFTLDKNHNAM
TVATPGDSAIAPPPRPPKPSQAETPRWGSPQQRPPISENSRSVAATIPRRNTLPAMDNSR
LHRASSCETYEYPQRGGESAGRSAESMSDGVGSFLPGKMIVGRSDSTNSEDNYVPMNPGS
STLLAMERAGDNSQSVYIPMSPGAHHFDSLGYPSTTLPVHRGPSRGSEIQPPPVNRNLKP
DRKAKPTPLDLRNNTVIDELPFKSPITKSWSRANHTFNSSSSQYCRPISTQSITSTDSGD
SEENYVPMQNPVSASPVPSGTNSPAPKKSTGSVDYLALDFQPSSPSPHRKPSTSSVTSDE
KVDYVQVDKEKTQALQNTMQEWTDVRQSSEPSKGAKL

>gi568815587r:78073775_78274554|GENSCAN_predicted_CDS_6|1734_bp
atggagatgatgctcctcacagcgttgttgggaggttgcacagctgagctcagcagctct
agccagcaccttctccgagagcgcaagtcctcagccccatcacactccagccagccaact
ctgttcacgtttgaaccccctgtgtcaaaccacatgcagcccaccttgtccaccagcgca
cctcaggagtatctctacttgcaccagtgcataagccgaagagcagaaaatgcaagcctt
tggggcctcattccagattctagccagtgtctgtcttcttatttcaagaaggctgttaaa
cctgtaacagatgatacattgatgagtgccagcttctctcagggcaccagagcctctttt
ctcatgaggagtgacacagctgtacaaaaacttgcccagggcaatggacactgtgtcaac
gggatcagtggtcaagtccatggcttctatagccttcccaagccgagccggcacaataca
gaattcagagacagtacctacgacctcccccgcagcctggcctcccatggccacaccaag
ggcagcctcacaggctccgagacagataatgaggatgtgtacaccttcaagacgcccagc
aacaccctgtgcagggagttcggggacctcctggtagacaatatggatgttccggccacc
ccactctcagcctaccagatccctaggacattcactctggacaaaaaccacaatgccatg
acagtggccactcctggggactcagccatagctcccccaccccgcccccccaagccaagt
caggcagaaacacctcgatggggcagtcctcagcagagaccgccaatcagtgaaaatagc
agatctgtcgctgccaccatccccagacgcaacaccctccctgcaatggacaacagccga
cttcaccgagcttcttcctgtgagacctacgagtacccacagcgtggtggagagagtgca
ggccggtctgctgaatccatgagtgatggagttggctctttcctgccagggaaaatgatt
gtgggccgatcggacagcaccaattctgaagacaactatgtgcccatgaatccaggttct
tccaccctgttggccatggaacgagcaggtgataattcccagagcgtctacatcccaatg
agcccaggggcccatcactttgactcacttggctacccatcaacaacccttcctgtgcac
cgaggccccagcagaggaagtgagattcagccaccccctgtcaaccgcaacctcaaacct
gatcggaaagcaaagccaacaccacttgacctgaggaacaacaccgtcatcgatgaactc
cccttcaagtcacctatcaccaagtcttggtctagggccaaccacaccttcaactccagc
tcctcccagtactgccgccccatctccacccagagcatcaccagcacagactcaggagac
agcgaagagaactatgtccctatgcaaaacccagtgtctgcatctcccgttcccagtggc
acgaacagtcctgcccctaagaagagcaccggcagcgttgattatctggccctggacttc
cagccgagctccccaagcccccaccgcaagccatctacttcatccgtcacctctgatgag
aaggtggactacgttcaggtggacaaggagaagacccaggccctgcagaacaccatgcag
gagtggacagacgtgcggcagtcctcagagccttccaagggtgccaagctgtga