GENSCAN 1.0	Date run:  4-Nov-116	Time: 04:42:34

Sequence gi568815581f:1180002_1395623 : 215622 bp : 50.14% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2266   2310   45  1  0  127  110    29 0.863   6.52
 1.02 Intr +   9021   9142  122  0  2   74   76    36 0.234   1.14
 1.03 Intr +  11902  12031  130  2  1  107   95    67 0.991   9.05
 1.04 Intr +  13292  13484  193  2  1   35   75   139 0.820   6.79
 1.05 Term +  18191  18433  243  1  0   71   37   122 0.663   1.30
 1.06 PlyA +  19834  19839    6                               1.05

 2.05 PlyA -  19938  19933    6                               1.05
 2.04 Term -  21250  21149  102  1  0   89   44    73 0.034   1.28
 2.03 Intr -  36897  36781  117  0  0   65   47   112 0.354   5.46
 2.02 Intr -  48774  48659  116  1  2   48   84    11 0.200  -3.13
 2.01 Init -  49629  48792  838  0  1   57   80  1300 0.987 118.96
 2.00 Prom -  53667  53628   40                              -5.76

 3.00 Prom +  56887  56926   40                              -5.66
 3.01 Sngl +  69984  70418  435  2  0   55   42   222 0.573  10.58
 3.02 PlyA +  73056  73061    6                               1.05

 4.00 Prom +  79790  79829   40                              -7.36
 4.01 Init +  90563  91127  565  1  1   69   15   666 0.922  50.61
 4.02 Term +  91300  91511  212  2  2   45   50   174 0.943   6.76
 4.03 PlyA +  91797  91802    6                               1.05

 5.00 Prom +  93138  93177   40                              -8.16
 5.01 Init + 100001 100387  387  1  0   96  115   440 0.989  44.31
 5.02 Term + 100818 100892   75  2  0   70   55     0 0.179  -7.26
 5.03 PlyA + 103814 103819    6                               1.05

 6.04 PlyA - 104678 104673    6                               1.05
 6.03 Term - 106902 106784  119  1  2   26   48   158 0.630   4.30
 6.02 Intr - 108432 108289  144  1  0  -58   56   184 0.407   0.85
 6.01 Init - 108716 108434  283  2  1   64    3   371 0.332  23.40
 6.00 Prom - 111432 111393   40                              -9.75

 7.03 PlyA - 111602 111597    6                               1.05
 7.02 Term - 113753 113429  325  1  1   47   44   469 0.544  32.64
 7.01 Init - 114337 114297   41  1  2   70   97   -21 0.497  -3.33
 7.00 Prom - 114870 114831   40                              -9.46

 8.00 Prom + 114987 115026   40                             -10.94
 8.01 Init + 115433 115622  190  1  1   60   94   336 0.414  28.57
 8.02 Intr + 124779 125051  273  1  0   77   65   149 0.819   9.01
 8.03 Intr + 147811 147902   92  2  2   93   56    38 0.444   0.81
 8.04 Term + 148932 149510  579  2  0   18   49   385 0.878  22.09
 8.05 PlyA + 150166 150171    6                              -3.94

 9.03 PlyA - 150312 150307    6                               1.05
 9.02 Term - 151883 151779  105  2  0   85   50    68 0.822   1.11
 9.01 Init - 154885 154829   57  1  0  110   92    54 0.881   9.31
 9.00 Prom - 159773 159734   40                              -5.06

10.07 PlyA - 163655 163650    6                               1.05
10.06 Term - 165498 165446   53  1  2  118   53    98 0.901   6.89
10.05 Intr - 174346 174210  137  0  2   57  115   143 0.998  14.11
10.04 Intr - 181297 181091  207  0  0   75  111   147 0.997  13.89
10.03 Intr - 182007 181901  107  0  2   97   51    30 0.991  -0.79
10.02 Intr - 185057 184858  200  0  2   91   81   182 0.426  16.87
10.01 Init - 202854 202764   91  0  1   86   80    45 0.354   2.15

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815581f:1180002_1395623|GENSCAN_predicted_peptide_1|244_aa
XSENRGPEQLSNPLRGSWHLVLSWSAQSHEHTVRCQELARETSTHDSCSPERRVKKGGKE
RSTEHSLNPAAGSATNLLCDSEELPFPVCPLMFSPRHEEMIQDSPALPASLLNALRPTCP
EHRQYLRSRHPVKHVTFTLRKQPLYVEATVTTPALQKRLKFTLLRPHMRLYMQAGHISFQ
AHKQPRLPAKTTNPNVGTRGTLPKAELLLIFSVTFRTKKEEVLSGQGELGLRHQQTATSH
LASA

>gi568815581f:1180002_1395623|GENSCAN_predicted_CDS_1|735_bp
nngtcagaaaaccgaggccctgagcagctgagtaacccactcagaggctcttggcacctt
gtcctgagctggtcagctcagtctcatgaacacacagtccggtgccaggagctggcacga
gaaactagcacacatgactcgtgttctcccgaaaggagagtgaagaagggagggaaagag
cgctcgaccgagcacagcctgaatccagctgctggttctgccactaacttgctgtgtgac
tctgaagaactgcctttccctgtctgtcccttgatgttctcacctcgacacgaagagatg
attcaggactcccccgctctcccggcgagtttgctgaacgcccttcggccgacgtgtccc
gagcatcgccagtatttacgttctaggcaccctgttaagcacgtaaccttcactcttcgc
aagcagcctctctatgtggaagccacagtcaccacgcccgctttacagaagaggctcaag
ttcacactgctaaggccacacatgaggctgtacatgcaggcaggccacatttccttccag
gcccacaaacaacctcgacttcctgcaaagaccactaaccccaacgtcggtacacgtggc
acgttgcccaaggccgagctgctgctgatttttagtgtgactttcaggaccaaaaaggaa
gaggttctgtctggacaaggagagcttggcctgagacaccaacagacggcaacttcccac
ctggcctctgcctga

>gi568815581f:1180002_1395623|GENSCAN_predicted_peptide_2|390_aa
MWDPRAFERRWRAEFPGAEAPVPRLESVRDAERELERRRLNLERLQQVLAEEQLKASLPQ
AALARGGGGDSGEPGRPDPEAESPRGDPGRPDPEAESPRGDLPAGPGAAGEAGGGRSWAD
AVHRQLLQPQLRFRAREDDAPLGDPQAAPGTDEGGDGGDHDFEMVDFNEKFILSHWLVAP
CRFGTRERARSPRRWMHLIPGGRRPQRGTRDLEQREAEAKGRPGSPLAAEETPGREHLPP
WRRRRFLRVPERDSPGHSSPERDSDGSRHSSDREDDFSADPARPRRAPPTPGCRDPFPAD
SAALFNLELGAGERAGRRRAQSGFLNAELVGNLCGLAVSTQKLIIHINGLKELLFTENPH
PDLKHCALHPEQQPRGHRPREAIADVNSLE

>gi568815581f:1180002_1395623|GENSCAN_predicted_CDS_2|1173_bp
atgtgggacccccgcgcgttcgagcggcgctggcgggccgagttccccggggcggaggcg
ccggtcccgaggctggagtcggtgcgggacgcggagcgggagctggagcgccgcagactc
aacctggagcggctgcaacaggtgctggcggaggagcagctcaaagcctcgctcccgcag
gccgcgctggcccggggcggcggcggagactccggggagcccgggcgccccgaccccgag
gccgagtctccccgcggggaccccgggcgccccgaccccgaggccgagtctccccgcggg
gacctgcccgccgggcccggggcggccggagaagccggcgggggaaggagctgggccgac
gccgtccaccggcagctcctgcagccccagctgcggttccgggcccgggaggacgacgcg
cccctcggggacccccaggcggctcccggcacggacgaggggggcgacggcggcgaccac
gacttcgagatggtggatttcaacgagaagttcatcctcagccactggctggtggcccct
tgccggttcgggacccgcgagcgggcgcgcagcccccgccgctggatgcacctgatcccc
ggggggcggcggccgcagcgggggacccgcgacctggagcagcgggaggccgaggccaag
ggccgcccgggctcgcccctcgccgcggaggagacccccgggcgcgagcacctgcccccg
tggcggcgccgcaggttcctgcgggtgcccgagcgggactcgcccggccacagctcgccg
gagagagacagcgacggcagccggcacagctccgaccgcgaggacgacttctccgcagac
cccgctcgaccccgccgcgcgccccccaccccgggctgccgggaccccttcccggccgac
tccgcggccctgtttaacctcgagctcggggccggggagcgggcgggaaggaggagggca
cagagtggcttcctgaatgccgagcttgttggtaacctttgtgggctggcagtgagcacg
cagaaattaattattcatatcaatgggctgaaggagctgttgttcactgagaacccacat
cctgacctaaagcattgtgctttgcatccggagcagcagcctcgtggacaccggccccgt
gaagctattgctgatgtgaacagtcttgagtga

>gi568815581f:1180002_1395623|GENSCAN_predicted_peptide_3|144_aa
MGTLAGDCGGKIMGTLAGDCGGKIMGTLAGGCGGKIMGTLAGGCGGKIMGTLAGGCGGKI
MGTLAGGCGGKIMGTLAGGCGGKIMGTLAGGCGGKIMGTLAGCCGGKIMGTLAGGCGGEE
KSRERQTEFHSLQCTQLPLQQLCA

>gi568815581f:1180002_1395623|GENSCAN_predicted_CDS_3|435_bp
atggggacccttgctggggactgtggagggaagatcatggggacccttgctggggactgt
ggagggaagatcatggggacccttgctgggggctgtggagggaagatcatggggaccctt
gctgggggctgtggagggaagatcatggggacccttgctgggggctgtggagggaagatc
atggggacccttgctgggggctgtggagggaagatcatggggacccttgctgggggctgt
ggagggaagatcatggggacccttgctgggggctgtggagggaagatcatggggaccctt
gctgggtgctgtggagggaagatcatggggacccttgctgggggctgtggaggggaagaa
aagtcacgtgaacgacagacggaattccattccctccagtgcacacagctgccgctgcag
caattatgtgcttaa

>gi568815581f:1180002_1395623|GENSCAN_predicted_peptide_4|258_aa
MLRGAPGLGLTARKGAEDSAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARP
VRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLV
LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP
PHAPLARPRRPGWQLDYKTRDCKGVLDRAELDRLRPGVEEKELAREKELRDPGLRPHIPA
WGREKELRGLGLRPHIPA

>gi568815581f:1180002_1395623|GENSCAN_predicted_CDS_4|777_bp
atgctgcggggcgcgccaggactaggcctcacggcgcggaagggggccgaggactctgcg
gaggacttggggggcccctgccccgagcccgggggcgattcgggggtgctgggggcgaac
ggcgcttcctgcagccggggcgaggcggaggagccggcgggcaggaggcgcgcgcggccg
gtgcggtccaaggcgcggcgcatggccgccaacgtgcgggagcgcaagcgcatcctagac
tacaacgaggccttcaacgcgctgcgccgggcgctgcggcacgacctgggcggcaagagg
ctctccaagatcgccacgctgcgcagggccatccaccgcatcgccgcgctctccctggtc
ctgcgcgccagccccgcgccccgcgggccctgcggacacctggagtgccacggcccggcc
gcgcgcggggacaccggggacacaggcgccagccccccgccgcctgcagggcccagcctc
gcgcgcccagacgccgcccgcccctcggtgccgtccgcgccccgctgcgcctcgtgcccc
ccgcacgcgcccctggcacggcccaggaggccgggctggcagctggactataaaacccgg
gactgcaaaggcgtcttggacagagcagaactggaccggctgagacctggcgtggaagag
aaggagctcgccagagagaaggagctccgggacccggggttgcgcccccacatcccagcc
tggggcagagagaaggagctccggggcctggggctgcgcccccacatcccagcctag

>gi568815581f:1180002_1395623|GENSCAN_predicted_peptide_5|153_aa
MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGL
PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN
LIPLIISIMATWTCSQPLPAPVSKSRSGFPAVP

>gi568815581f:1180002_1395623|GENSCAN_predicted_CDS_5|462_bp
atggcccacccggtgcagtccgagtttccttcagcacaggagccaggctccgccgcattc
ctggacctgccggagatggagatactcctcaccaaggcagagaacaaggatgacaagacc
ctgaatctgtccaagaccctctcggggcctctggatctggagcagaacagccagggccta
cccttcaaggccatctccgaggggcacctggaggccccactgcctcggtccccctcccgg
gccagctcaaggagggcgtcctccatcgccaccacctcctatgcccaagaccaagaagcc
cccagagattacctcatcctggccgtcgtcgcctgcttctgccccgtctggcccctcaac
ctcatccccctcatcatttccatcatggccacctggacatgctcccagcctctgccggct
ccggtttccaagagtcgcagcggcttccctgccgtaccctga

>gi568815581f:1180002_1395623|GENSCAN_predicted_peptide_6|181_aa
MGNPVGDEEPVGGGEPVGDEKLEGDGEPMGDGEPVGDEKLEGDEEPMGDGEPIGDGEPVG
DEKLEGDGEPVGDGKPMGDGEPVGDEEPVGDGEPMGDEEPVGVGEPVGDEEPMGDGEPMG
DGEPVGDEEPVGDGEPVGDGEPAGANHTRLANNNTPQADNNTPQADNNTPQADNTPRADN
T

>gi568815581f:1180002_1395623|GENSCAN_predicted_CDS_6|546_bp
atggggaacccggtgggggatgaggagcccgtggggggtggggaacccgtgggggatgag
aagctggagggggatggggaacccatgggggatggggaacccgtgggggatgagaagctg
gagggggacgaggagcccatgggggatggggaacccattggggatggggaacccgtgggg
gatgagaagctggagggggatggggagcccgtgggggatgggaaacccatgggggatggg
gaacccgtgggggatgaggaacccgtgggggatggggaacccatgggggatgaggaacct
gtgggggttggggaacctgtgggggatgaggagcccatgggggatggggagcccatgggg
gatggggaacccgtgggggatgaggagcccgtgggggatggggaacccgtgggggatggg
gaacccgctggagcaaatcacacccggctggccaataacaacactccacaggccgacaac
aacaccccacaggccgacaacaacaccccacaggccgacaacaccccacgggctgataac
acctga

>gi568815581f:1180002_1395623|GENSCAN_predicted_peptide_7|121_aa
MWLHGGLVLCITPRSVWDSVTSSNSTCDIIKLNPQHQTQLMTSSNPAHDIIKPNLRHHQT
QPTTSSNSTHDIIKPNPRHHQTQLVTSSNPTCDIIKHNPRHHQTQPTTSSNPTHDIIKLN
S

>gi568815581f:1180002_1395623|GENSCAN_predicted_CDS_7|366_bp
atgtggcttcacgggggccttgttttatgtatcactcctcgctccgtctgggacagcgtg
acatcatcaaattcaacctgtgacatcatcaaactcaacccacaacatcaaactcaactc
atgacatcatcaaacccagcccatgacatcatcaaacccaacctgcgacatcatcaaaca
caacccacgacatcatcaaactcaacccacgacatcatcaaacccaacccacgacatcat
caaactcaactcgtgacatcatcaaacccaacctgcgacatcatcaagcacaacccacga
catcatcaaactcaacccacgacatcatcaaacccaacccacgacatcatcaaactcaac
tcgtga

>gi568815581f:1180002_1395623|GENSCAN_predicted_peptide_8|377_aa
MKLTHSLPGSRGLSVLSPQSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTV
NFTGIPAPGVGPGSYAAFVLTAKWALLYRQKHENCKRLPFLGCLRLDAQPGVLRVVGFQR
SWALPEQGTVCEAVLGRPARYALLGSFPGGGSTAGGDGVSICKPGPSADAGSACTFTSDF
PASRTRNTGRTLTQYPTETTGRTLTQYPTGTTGRTLARYPTETAGRTLTQYPTETMGRTL
TQYSRGPTGRTLTQYPTETTGRTLTKYTTETAGRTLTQYLRGPTGRTLSQYPTETARRTL
TRYSTEIARRTLTQYPTETTGRTLTQYPTETAGRTLTQYPTVLRKRVSPRSCRGARSGSM
GSAGGDSGPPLKMGFGS

>gi568815581f:1180002_1395623|GENSCAN_predicted_CDS_8|1134_bp
atgaagctgacccacagccttcccggttcccggggtctctctgtgctctctccgcagtct
cgaagcagcatgcaacagggcaacgtggacggcgcccggaggctgggccgcctggctcgg
ctgctcagcattaccctcatcatcatgggcatcgtcattatcatggtggccgtgaccgtc
aacttcacaggaattcctgctcccggagttggcccaggttcatatgctgcctttgtgctg
actgcaaagtgggccctcctatacagacaaaaacatgaaaactgcaaacgcctccccttc
ctgggatgtttgcggctggacgcccagcctggtgtgctgagggtagttggatttcagagg
tcctgggcactgcctgagcagggcacagtctgcgaggccgtcctgggcagacctgcccgc
tacgccttgttggggtcctttcccggaggtggcagcacagccggtggggacggagtgtcc
atctgcaaaccaggaccctcggccgacgctgggtctgcctgcaccttcacctcagacttc
ccagcctccagaacgagaaacactggaaggactctgacccagtaccccacagagaccact
ggaaggactctgacccagtaccccacagggaccactggaaggactctggcccggtacccc
acagagactgctggaaggactctgacccagtaccccacagaaaccatgggaaggactctg
acccagtactccagagggcccactggaaggactctgacccagtacccgacagagaccact
ggaaggaccctgaccaagtacaccacagagactgctggaaggactctgacccagtacctc
agagggcccactggaaggactctaagccagtaccccacagagaccgctagaaggactctg
actcggtactccacagagattgctagaaggactctgacccagtaccccacagagaccact
ggaaggactctgacccagtaccccacagagacagctggaaggactctgacccagtacccc
acagttctaaggaagagggttagtccacggagctgcagaggtgcccgctccggctctatg
gggtcagcaggaggtgactcaggaccacctctgaagatgggctttgggtcctga

>gi568815581f:1180002_1395623|GENSCAN_predicted_peptide_9|53_aa
MAPYEFLISVLEGIKADTQSCLLIFLSSLQLVITLFKDTVQLPVVCDRVWWYP

>gi568815581f:1180002_1395623|GENSCAN_predicted_CDS_9|162_bp
atggccccatacgagtttctaatctcggtgctcgagggaattaaggcagatactcagagc
tgcctccttatcttcctcagcagcttacaacttgtcatcactctcttcaaggacacggtg
cagctccctgttgtttgtgaccgtgtgtggtggtacccatga

>gi568815581f:1180002_1395623|GENSCAN_predicted_peptide_10|264_aa
MGFRQVGQAGLDLLTSSDPLASASQIAGNTEMVESMKKVAGMDVELTVEERNLLSVAYKN
VIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPA
ANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRL
GLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLW
TSDMQGDGEEQNKEALQDVEDENQ

>gi568815581f:1180002_1395623|GENSCAN_predicted_CDS_10|795_bp
atggggtttcgccaggttggccaggctggtctcgatctcctgacctcaagtgatccgctg
gcctcagcctctcaaattgctgggaatacagaaatggtggagtcaatgaagaaagtagca
gggatggatgtggagctgacagttgaagaaagaaacctcctatctgttgcatataagaat
gtgattggagctagaagagcctcctggagaataatcagcagcattgaacagaaagaagaa
aacaagggaggagaagacaagctaaaaatgattcgggaatatcggcaaatggttgagact
gagctaaagttaatctgttgtgacattctggatgtactggacaaacacctcattccagca
gctaacactggcgagtccaaggttttctattataaaatgaaaggggactaccacaggtat
ctggcagaatttgccacaggaaacgacaggaaggaggctgcggagaacagcctagtggct
tataaagctgctagtgatattgcaatgacagaacttccaccaacgcatcctattcgctta
ggtcttgctctcaatttttccgtattctactacgaaattcttaattcccctgaccgtgcc
tgcaggttggcaaaagcagcttttgatgatgcaattgcagaactggatacgctgagtgaa
gaaagctataaggactctacacttatcatgcagttgttacgtgataatctgacactatgg
acttcagacatgcagggtgacggtgaagagcagaataaagaagcgctgcaggacgtggaa
gacgaaaatcagtga