GENSCAN 1.0	Date run:  4-Nov-116	Time: 04:39:53

Sequence gi568815579f:4551870_4752427 : 200558 bp : 54.11% C+G : Isochore 3 (51 - 57 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.09 Intr -    770    553  218  2  2   79   76   342 0.638  29.93
 1.08 Intr -   2607   2519   89  1  2  114  100   114 0.991  15.39
 1.07 Intr -   3226   3107  120  2  0   72  100   152 0.954  15.77
 1.06 Intr -   3695   3605   91  2  1   74  119   170 0.988  18.77
 1.05 Intr -   4220   4119  102  2  0   89   75   231 0.982  22.77
 1.04 Intr -   5144   5082   63  2  0  115  105    61 0.994   9.91
 1.03 Intr -   5354   5294   61  1  1  100   72   145 0.996  13.33
 1.02 Intr -   6280   6157  124  2  1   89   72   229 0.986  21.55
 1.01 Init -   6588   6468  121  0  1   89   74   238 0.978  20.81
 1.00 Prom -  18345  18306   40                              -5.41

 2.00 Prom +  18944  18983   40                              -2.71
 2.01 Init +  23551  23684  134  0  2   58  105    61 0.639   4.39
 2.02 Intr +  24488  24524   37  2  1   79   94    26 0.447   1.05
 2.03 Intr +  28327  28406   80  0  2   50   80    66 0.463   0.84
 2.04 Intr +  28740  28903  164  0  2   46   86    54 0.410   1.13
 2.05 Intr +  32448  32577  130  1  1   26   60   113 0.456   2.56
 2.06 Intr +  33822  33933  112  0  1  103   42    65 0.194   4.28
 2.07 Intr +  38979  39014   36  2  0  144   94    38 0.766   8.94
 2.08 Intr +  39909  39925   17  2  2   90  105     1 0.458  -3.18
 2.09 Intr +  40857  41028  172  0  1   72   58   100 0.279   5.86
 2.10 Intr +  67756  67871  116  0  2  137   84    -1 0.010   4.15
 2.11 Intr +  87540  87760  221  0  2   52   71   162 0.621   9.37
 2.12 Term +  88828  88946  119  2  2   79   42   106 0.657   4.11
 2.13 PlyA +  89489  89494    6                              -0.45

 3.00 Prom +  90021  90060   40                              -0.21
 3.01 Sngl + 100001 100561  561  1  0   83   46  1361 0.736 127.92
 3.02 PlyA + 102242 102247    6                               1.05

 4.10 PlyA - 102479 102474    6                               1.05
 4.09 Term - 103004 102916   89  0  2  104   38    49 0.304  -0.38
 4.08 Intr - 104536 104453   84  2  0   20   97    90 0.268   3.39
 4.07 Intr - 106459 106374   86  0  2   90   68    56 0.798   3.76
 4.06 Intr - 106801 106690  112  2  1   18   91    52 0.800  -1.56
 4.05 Intr - 108134 108062   73  2  1   83   96    79 0.985   7.67
 4.04 Intr - 108881 108800   82  1  1  156   83    93 0.860  15.74
 4.03 Intr - 113068 113007   62  1  2  123   78    39 0.982   4.42
 4.02 Intr - 116776 116726   51  1  0  110  105    25 0.978   5.99
 4.01 Init - 118465 118292  174  1  0  109   71   291 0.989  26.82
 4.00 Prom - 120024 119985   40                              -1.71

 5.28 PlyA - 121710 121705    6                               1.05
 5.27 Term - 124787 124695   93  2  0  128   52   131 0.993  11.63
 5.26 Intr - 128077 127966  112  0  1  120   94   118 0.917  16.48
 5.25 Intr - 130969 130827  143  1  2  127   52   365 0.984  36.46
 5.24 Intr - 131760 131608  153  0  0   52   98   319 0.987  30.08
 5.23 Intr - 132940 132794  147  1  0  108   47   245 0.757  23.34
 5.22 Intr - 133902 133757  146  1  2   96  109   213 0.970  24.71
 5.21 Intr - 137023 136888  136  1  1   79   81   267 0.981  25.75
 5.20 Intr - 137853 137701  153  0  0   95   75   254 0.943  25.58
 5.19 Intr - 138443 138375   69  2  0  104   72    33 0.505   3.17
 5.18 Intr - 139088 139009   80  0  2  153   76    31 0.990   8.17
 5.17 Intr - 142954 142792  163  1  1   88  105   116 0.945  13.36
 5.16 Intr - 143686 143509  178  0  1  113   75   249 0.946  26.54
 5.15 Intr - 145782 145682  101  0  2  127   73   128 0.947  14.61
 5.14 Intr - 148408 148347   62  2  2  101  116    57 0.995   8.74
 5.13 Intr - 150286 150158  129  2  0   41  109   218 0.980  20.37
 5.12 Intr - 150847 150734  114  2  0  140  100   170 0.999  24.32
 5.11 Intr - 152185 152017  169  1  1  127   81   218 0.999  25.03
 5.10 Intr - 152435 152262  174  2  0  120   89   364 0.999  40.35
 5.09 Intr - 154101 153989  113  1  2  109  115   124 0.986  17.80
 5.08 Intr - 160926 160746  181  0  1   65   25    81 0.385  -0.54
 5.07 Intr - 161657 161472  186  2  0   54   64    59 0.261   0.50
 5.06 Intr - 162135 162029  107  1  2   85   47    62 0.853   2.23
 5.05 Intr - 162468 162212  257  2  2  108   94   495 0.964  49.72
 5.04 Intr - 168072 167982   91  1  1  111  100    75 0.514  10.55
 5.03 Intr - 181179 181144   36  1  0  124   91    36 0.010   6.22
 5.02 Intr - 191307 191170  138  1  0  116   81    41 0.146   7.14
 5.01 Init - 196566 196509   58  0  1   84   61    52 0.240   1.52

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 154355 154289   67  2  1  114   44   -10 0.858  -1.49
S.002 Term - 160192 159993  200  2  2   62   45   141 0.890   5.08
S.003 Term - 186490 186448   43  0  1  100   28   132 0.831   5.32


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579f:4551870_4752427|GENSCAN_predicted_peptide_1|330_aa
MQTPRASPPRPALLLLLLLLGGAHGLFPEEPPPLSVAPRDYLNHYPVFVGSGPGRLTPAE
GADDLNIQRVLRVNRTLFIGDRDNLYRVELEPPTSTELRYQRKLTWRSNPSDINVCRMKG
KQEGECRNFVKVLLLRDESTLFVCGSNAFNPVCANYSIDTLQPVGDNISGMARCPYDPKH
ANVALFSDGMLFTATVTDFLAIDAVIYRSLGDRPTLRTVKHDSKWFKEPYFVHAVEWGSH
VYFFFREIAMEFNYLEKVVVSRVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHF
YFNVLQAVTGVVSLGGRPVVLAVFSTPSNS

>gi568815579f:4551870_4752427|GENSCAN_predicted_CDS_1|990_bp
atgcagaccccgcgagcgtcccctccccgcccggccctgctgcttctgctgctgctactg
gggggcgcccacggcctctttcctgaggagccgccgccgcttagcgtggcccccagggac
tacctgaaccactatcccgtgtttgtgggcagcgggcccggacgcctgacccccgcagaa
ggtgctgacgacctcaacatccagcgagtcctgcgggtcaacaggacgctgttcattggg
gacagggacaacctctaccgcgtagagctggagccccccacgtccacggagctgcggtac
cagaggaagctgacctggagatctaaccccagcgacataaacgtgtgtcggatgaagggc
aaacaggagggcgagtgtcgaaacttcgtaaaggtgctgctccttcgggacgagtccacg
ctctttgtgtgcggttccaacgccttcaacccggtgtgcgccaactacagcatagacacc
ctgcagcccgtcggagacaacatcagcggtatggcccgctgcccgtacgaccccaagcac
gccaatgttgccctcttctctgacgggatgctcttcacagctactgttaccgacttccta
gccattgatgctgtcatctaccgcagcctcggggacaggcccaccctgcgcaccgtgaaa
catgactccaagtggttcaaagagccttactttgtccatgcggtggagtggggcagccat
gtctacttcttcttccgggagattgcgatggagtttaactacctggagaaggtggtggtg
tcccgcgtggcccgagtgtgcaagaacgacgtgggaggctccccccgcgtgctggagaag
cagtggacgtccttcctgaaggcgcggctcaactgctctgtacccggagactcccatttc
tacttcaacgtgctgcaggctgtcacgggcgtggtcagcctcgggggccggcccgtggtc
ctggccgttttttccacgcccagcaacagn

>gi568815579f:4551870_4752427|GENSCAN_predicted_peptide_2|445_aa
MGVEVSGSAKCCWERKTWRMNLKKTKAGNRSQGKGPGVRADHKSCHTGLLGVPPTRQNPK
ASEHPSNSKSPFRSSLGVKDDSLSSWGPPNPQAPTAAGGIRTGRPSPPTPLRPLPRGLDP
RLVLFWAGQEAGEDSGAQVRVLRAPAATDTFFPVRPGLRPRVRGGPGRPGGGQKAFRVPG
MGLIMIVTEDPGGLPGGGGSSILKCQGYSFIGTASVSEYVDLVNPSSFIPKVGKPWSFPE
PSTGQKPYTFPRRWKEDSLVLGTEDFDKLVMRTSGQNHVCRGKTQPYPSFLSCLALGAHL
PRGCQPLGSTLPTLLRHPPLCYFQIPHLLLPPRPGNSPVPSARAGRVEGVACRGARRVEG
GAALPAPPRPRPRLRRCSHRRGNGPGPRRRLDGPPTVGRTDSASRVVTLASSCFSNTPGE
VLSQGLCMGCALCHYGRSEGANFET

>gi568815579f:4551870_4752427|GENSCAN_predicted_CDS_2|1338_bp
atgggggtggaggtctcagggagtgccaagtgctgctgggaacggaagacctggcgaatg
aacttgaagaagacaaaggcgggaaataggtcccaggggaaaggccccggggtcagagcg
gaccacaagtcctgccatacgggcctacttggtgttcctccaacacgccagaaccccaaa
gcctcagagcaccccagtaactccaagtccccgttccgctccagtctaggggtcaaagat
gacagcctcagctcttgggggcccccgaacccccaggcccccactgcagcgggggggatc
cggaccggccggccctcccctccaacaccactgcgacccctgccccgcggcctggacccg
cgactcgtcctgttctgggctggacaggaggccggagaggactcgggcgcccaagtgcgg
gttttgcgggcgcccgcggccaccgacaccttcttcccagtgcggcccgggctgcggccc
cgggtccgaggaggcccggggagacccggaggaggtcagaaggccttcagggtccccggg
atgggcctaatcatgattgtcactgaagatccaggagggcttcctggaggaggaggcagc
tccattctgaaatgccaagggtacagctttattgggacagccagtgtctctgaatatgtt
gacctggtcaacccgtcctccttcattcccaaggtgggaaaaccgtggagcttcccagag
cccagcacagggcagaagccctacacgttccccaggagatggaaagaagattccctggtt
ctggggactgaagattttgacaagctggtaatgcgcacctctggtcagaaccacgtctgc
agaggaaagacccagccatatccctcttttctcagctgcctggctctgggtgcacatctc
ccccggggctgccaacctctgggctccacactccccactctcctgcggcacccccctctc
tgctacttccagatcccccacctgctcctgcctcccaggcctggcaactctccggtccct
tccgcgcgggcggggcgagtggagggcgtggcctgccgaggggcgaggcgagtggagggc
ggggccgcgctgcccgccccgccccggccccggccccggctccggcgctgctcccaccgc
cgcggcaacggccccggcccacggaggcggctggacggacccccgacggttggacgtacg
gactctgcttcgagagtagtcacactggcctcctcctgtttctccaacaccccaggcgag
gtcctctctcagggcctttgcatgggctgtgccctctgccactacggcaggtccgagggc
gccaactttgaaacataa

>gi568815579f:4551870_4752427|GENSCAN_predicted_peptide_3|186_aa
MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKML
KNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGL
LECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRM
LDEGSL

>gi568815579f:4551870_4752427|GENSCAN_predicted_CDS_3|561_bp
atggacaccttcagcaccaagagcctggctctgcaggcgcagaagaagctcctgagtaag
atggcgtccaaggcagtggtggccgtgctggtggatgacaccagcagtgaggtgctggat
gagctgtaccgcgccaccagggagttcacgcgcagccgcaaggaggcccagaagatgctc
aagaacctggtcaaggtggccctgaagctgggactgctgctgcgtggggaccagctgggc
ggtgaggagctggcgctgctgcggcgcttccgccaccgggcgcgctgcctggccatgacg
gccgtcagcttccaccaggtggacttcaccttcgaccggcgcgtgctggccgccgggctg
ctcgagtgccgcgacctgctgcaccaggccgtgggtccccacctgaccgccaagtcccac
ggccgcatcaaccacgtgttcggccacctagccgactgcgacttcctggctgcgctctac
ggccccgccgagccctaccgctcccacctgcgcaggatctgcgagggcctgggccggatg
ctggacgagggcagcctctga

>gi568815579f:4551870_4752427|GENSCAN_predicted_peptide_4|270_aa
MAAPSGGWNGVGASLWAALLLGAVALRPAEAVSEPTTVAFDVRPGGVVHSFSHNVGPGDK
YTCMFTYASQGGTNEQWQMSLGTSEDHQHFTCTIWRPQGKSYLYFTQFKAEVRGAEIEYA
MAYSKAAFERESDVPLKTEEFEVTKTAAPVSSSHIQLHGANAKQKEESEAPSWGKGGSQG
SGHSRSFCGFLLPAIYVSPTDLTLHITVFLSVTQDEHDRVARASCAEKAVGNSAYHQYPG
QGTQNNLPDLQQHFAIFENPCPLLTNKNGK

>gi568815579f:4551870_4752427|GENSCAN_predicted_CDS_4|813_bp
atggcggcgcccagcggagggtggaacggcgtcggcgcgagcttgtgggccgcgctgctc
ctaggggccgtggcgctgaggccggcggaggcggtgtccgagcccacgacggtggcgttt
gacgtgcggcccggcggcgtcgtgcattccttctcccataacgtgggcccgggggacaaa
tatacgtgtatgttcacttacgcctctcaaggagggaccaatgagcaatggcagatgagt
ctggggaccagcgaagaccaccagcacttcacctgcaccatctggaggccccaggggaag
tcctatctgtacttcacacagttcaaggcagaggtgcggggcgctgagattgagtacgcc
atggcctactctaaagccgcatttgaaagggaaagtgatgtccctctgaaaactgaggaa
tttgaagtgaccaaaacagcagcaccggtgtcctcaagccacattcagctgcatggcgcc
aatgctaagcagaaagaggaatcggaggcgccgagctggggcaagggtgggagccaaggg
agtggacacagcaggtctttctgtggcttcctgctgcctgccatctatgttagccccacc
gaccttaccctccacatcactgttttcctgtctgtcacccaagatgagcacgacagggtt
gccagggcctcctgtgcagaaaaggccgtgggaaacagtgcctaccaccagtaccctggc
caaggcacccaaaataaccttcctgacctgcagcagcattttgcaatctttgagaacccc
tgccccctgctgacaaacaaaaatggcaaatag

>gi568815579f:4551870_4752427|GENSCAN_predicted_peptide_5|1162_aa
MTTPALCWGGAGLRWATQAGPSLPAPHPYPCQEEENAALQSEQCPPPWLPGRWMGDSMRL
ITLMAALAEVSWCDRTPGTPALLRSAERLMRKVKKLRLDKENTGSWRSFSLNSEGAERMA
TTGTPTADRGDAAATDDPAARFQVQKHSWDGLRSIIHGSRKYSGLIVNKAPHDFQFVQKT
DESGPHSHRLYYLEVHRSWKICSDGWALGMLSFEAQPQTALTTGKGCRGPLLQALDPHFL
LWACACTQLLLQRLQCLTGLGSSAPRVPSGHGLGCMSSSSFCSHCGPGSRETDLCGNQMV
VWQTKNLKGRIIQNRGRQVTAVFRSQVFLVPVTFLTSLAVLKLQQESHRNRGMPYGSREN
SLLYSEIPKKVRKEALLLLSWKQMLDHFQATPHHGVYSREEELLRERKRLGVFGITSYDF
HSESGLFLFQASNSLFHCRDGGKNGFMVSPMKPLEIKTQCSGPRMDPKICPADPAFFSFI
NNSDLWVANIETGEERRLTFCHQGLSNVLDDPKSAGVATFVIQEEFDRFTGYWWCPTASW
EGSEGLKTLRILYEEVDESEVEVIHVPSPALEERKTDSYRYPRTGSKNPKIALKLAEFQT
DSQGKIVSTQEKELVQPFSSLFPKVEYIARAGWTRDGKYAWAMFLDRPQQWLQLVLLPPA
LFIPSTENEEQRLASARAVPRNVQPYVVYEEVTNVWINVHDIFYPFPQSEGEDELCFLRA
NECKTGFCHLYKVTAVLKSQGYDWSEPFSPGEDEFKCPIKEEIALTSGEWEVLARHGSKA
SAKACSLLGSSSCFETISIPAQIWVNEETKLVYFQGTKDTPLEHHLYVVSYEAAGEIVRL
TTPGFSHSCSMSQNFDMFVSHYSSVSTPPCVHVYKLSGPDDDPLHKQPRFWASMMEAASC
PPDYVPPEIFHFHTRSDVRLYGMIYKPHALQPGKKHPTVLFVYGGPQVQLVNNSFKGIKY
LRLNTLASLGYAVVVIDGRGSCQRGLRFEGALKNQMGQVEIEDQVEGLQFVAEKYGFIDL
SRVAIHGWSYGGFLSLMGLIHKPQVFKVAIAGAPVTVWMAYDTGYTERYMDVPENNQHGY
EAGSVALHVEKLPNEPNRLLILHGFLDENVHFFHTNFLVSQLIRAGKPYQLQIYPNERHS
IRCPESGEHYEVTLLHFLQEYL

>gi568815579f:4551870_4752427|GENSCAN_predicted_CDS_5|3489_bp
atgacgaccccagcgctgtgttggggaggggcggggctcaggtgggcaacccaggcaggg
ccctccctccctgctccccatccctatccctgccaggaggaggaaaacgcagccctgcag
agcgagcaatgcccccctccttggttaccagggcgctggatgggggacagcatgcggctc
attaccctaatggctgcccttgctgaagtttcctggtgtgatcggacaccaggcacccct
gccctcctgaggtcagctgagcggttaatgcggaaggttaagaaactgcgcctggacaag
gagaacaccggaagttggagaagcttctcgctgaattccgagggggctgagaggatggcc
accaccgggaccccaacggccgaccgaggcgacgcagccgccacagatgacccggccgcc
cgcttccaggtgcagaagcactcgtgggacgggctccggagcatcatccacggcagccgc
aagtactcgggcctcattgtcaacaaggcgccccacgacttccagtttgtgcagaagacg
gatgagtctgggccccactcccaccgcctctactacctggaggtccacaggagttggaag
atctgctcggatggctgggccctgggcatgctgtccttcgaggctcagccacagacagct
ctgactacagggaagggctgccgcgggcccctgctgcaggctctggatccacacttcctc
ctctgggcgtgtgcctgcacgcagctcctcctgcagcgtctgcagtgcctcacgggactg
ggctcctctgcaccacgagtgccttcagggcacgggttaggctgcatgtcctccagcagc
ttctgcagccactgtgggcctggctcccgtgagacagacttgtgtgggaatcagatggtg
gtctggcaaacaaagaatttaaaaggaagaatcatccagaacaggggtcggcaggtgaca
gccgtcttcagaagtcaggttttcctggtccctgttactttcctgacatctttggctgtt
ctcaagctacagcaggagagtcaccgcaacagaggaatgccatatggcagccgagagaac
tccctcctctactctgagattcccaagaaggtccggaaagaggctctgctgctcctgtcc
tggaagcagatgctggatcatttccaggccacgccccaccatggggtctactctcgggag
gaggagctgctgagggagcggaaacgcctgggggtcttcggcatcacctcctacgacttc
cacagcgagagtggcctcttcctcttccaggccagcaacagcctcttccactgccgcgac
ggcggcaagaacggcttcatggtgtcccctatgaaaccgctggaaatcaagacccagtgc
tcagggccccggatggaccccaaaatctgccctgccgaccctgccttcttctccttcatc
aataacagcgacctgtgggtggccaacatcgagacaggcgaggagcggcggctgaccttc
tgccaccaaggtttatccaatgtcctggatgaccccaagtctgcgggtgtggccaccttc
gtcatacaggaagagttcgaccgcttcactgggtactggtggtgccccacagcctcctgg
gaaggttcagagggcctcaagacgctgcgaatcctgtatgaggaagtcgatgagtccgag
gtggaggtcattcacgtcccctctcctgcgctagaagaaaggaagacggactcgtatcgg
taccccaggacaggcagcaagaatcccaagattgccttgaaactggctgagttccagact
gacagccagggcaagatcgtctcgacccaggagaaggagctggtgcagcccttcagctcg
ctgttcccgaaggtggagtacatcgccagggccgggtggacccgggatggcaaatacgcc
tgggccatgttcctggaccggccccagcagtggctccagctcgtcctcctccccccggcc
ctgttcatcccgagcacagagaatgaggagcagcggctagcctctgccagagctgtcccc
aggaatgtccagccgtatgtggtgtacgaggaggtcaccaacgtctggatcaatgttcat
gacatcttctatcccttcccccaatcagagggagaggacgagctctgctttctccgcgcc
aatgaatgcaagaccggcttctgccatttgtacaaagtcaccgccgttttaaaatcccag
ggctacgattggagtgagcccttcagccccggggaagatgaatttaagtgccccattaag
gaagagattgctctgaccagcggtgaatgggaggttttggcgaggcacggctccaaggca
tcagccaaagcctgctcgctcctgggcagcagcagttgtttcgagaccattagcatccca
gcacagatctgggtcaatgaggagaccaagctggtgtacttccagggcaccaaggacacg
ccgctggagcaccacctctacgtggtcagctatgaggcggccggcgagatcgtacgcctc
accacgcccggcttctcccatagctgctccatgagccagaacttcgacatgttcgtcagc
cactacagcagcgtgagcacgccgccctgcgtgcacgtctacaagctgagcggccccgac
gacgaccccctgcacaagcagccccgcttctgggctagcatgatggaggcagccagctgc
cccccggattatgttcctccagagatcttccatttccacacgcgctcggatgtgcggctc
tacggcatgatctacaagccccacgccttgcagccagggaagaagcaccccaccgtcctc
tttgtatatggaggcccccaggtgcagctggtgaataactccttcaaaggcatcaagtac
ttgcggctcaacacactggcctccctgggctacgccgtggttgtgattgacggcaggggc
tcctgtcagcgagggcttcggttcgaaggggccctgaaaaaccaaatgggccaggtggag
atcgaggaccaggtggagggcctgcagttcgtggccgagaagtatggcttcatcgacctg
agccgagttgccatccatggctggtcctacgggggcttcctctcgctcatggggctaatc
cacaagccccaggtgttcaaggtggccatcgcgggtgccccggtcaccgtctggatggcc
tacgacacagggtacactgagcgctacatggacgtccctgagaacaaccagcacggctat
gaggcgggttccgtggccctgcacgtggagaagctgcccaatgagcccaaccgcttgctt
atcctccacggcttcctggacgaaaacgtgcactttttccacacaaacttcctcgtctcc
caactgatccgagcagggaaaccttaccagctccagatctaccccaacgagagacacagt
attcgctgccccgagtcgggcgagcactatgaagtcacgttgctgcactttctacaggaa
tacctctga