Result of FASTA (ccds) for pF1KB7033
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7033, 424 aa
  1>>>pF1KB7033 424 - 424 aa - 424 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0808+/-0.00078; mu= 13.8669+/- 0.047
 mean_var=81.1640+/-16.524, 0's: 0 Z-trim(109.2): 9  B-trim: 192 in 1/49
 Lambda= 0.142361
 statistics sampled from 10692 (10698) to 10692 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.329), width:  16
 Scan time:  3.300

The best scores are:                                      opt bits E(32554)
CCDS294.2 FAM46B gene_id:115572|Hs108|chr1         ( 425) 2811 586.8 1.3e-167
CCDS34489.1 FAM46A gene_id:55603|Hs108|chr6        ( 442) 1654 349.2 4.6e-96
CCDS896.1 FAM46C gene_id:54855|Hs108|chr1          ( 391) 1586 335.2 6.6e-92
CCDS14446.1 FAM46D gene_id:169966|Hs108|chrX       ( 389) 1281 272.6 4.8e-73


>>CCDS294.2 FAM46B gene_id:115572|Hs108|chr1              (425 aa)
 initn: 2811 init1: 2811 opt: 2811  Z-score: 3122.6  bits: 586.8 E(32554): 1.3e-167
Smith-Waterman score: 2811; 100.0% identity (100.0% similar) in 424 aa overlap (1-424:2-425)

                10        20        30        40        50         
pF1KB7  MPSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRL
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MMPSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRL
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB7 DALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 DALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESG
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB7 LGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKV
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB7 CTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 CTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEA
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB7 FHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 FHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRA
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB7 LQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNH
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB7 ERRQTLDLIAALALQALAEQGPAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ERRQTLDLIAALALQALAEQGPAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPT
              370       380       390       400       410       420

     420    
pF1KB7 WLPCN
       :::::
CCDS29 WLPCN
            

>>CCDS34489.1 FAM46A gene_id:55603|Hs108|chr6             (442 aa)
 initn: 1599 init1: 1219 opt: 1654  Z-score: 1838.1  bits: 349.2 E(32554): 4.6e-96
Smith-Waterman score: 1654; 65.3% identity (83.2% similar) in 386 aa overlap (44-424:59-442)

            20        30        40        50        60        70   
pF1KB7 AAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGRG
                                     :  : . :.: ::.:::..::: :::::::
CCDS34 GGDFGGGDFGGGDFGGGGSFGGHCLDYCESPTAHCNVLNWEQVQRLDGILSETIPIHGRG
       30        40        50        60        70        80        

            80        90       100       110       120       130   
pF1KB7 NFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDL
       ::::: .::  ::.:::  : :. . :..:::.::::::::: .::::::::::.: .::
CCDS34 NFPTLELQPSLIVKVVRRRLAEKRIGVRDVRLNGSAASHVLHQDSGLGYKDLDLIFCADL
       90       100       110       120       130       140        

           140       150       160       170       180       190   
pF1KB7 RSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDSDRWSLISLSN
       :.:. :: .: ::: ::::::: ::.. ::::::::::::::.::::.::::::::::::
CCDS34 RGEGEFQTVKDVVLDCLLDFLPEGVNKEKITPLTLKEAYVQKMVKVCNDSDRWSLISLSN
      150       160       170       180       190       200        

           200       210       220       230       240       250   
pF1KB7 KSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDF
       .::::::::::::.:::::::.::::: ::::::: .:: .::.:.::::. :::.::::
CCDS34 NSGKNVELKFVDSLRRQFEFSVDSFQIKLDSLLLFYECSENPMTETFHPTIIGESVYGDF
      210       220       230       240       250       260        

           260       270       280       290       300       310   
pF1KB7 TEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFP
        ::..:: ...::::.:::::::::::::.::::::::  : ....::::::::::::: 
CCDS34 QEAFDHLCNKIIATRNPEEIRGGGLLKYCNLLVRGFRP-ASDEIKTLQRYMCSRFFIDFS
      270       280       290       300        310       320       

           320       330       340       350       360       370   
pF1KB7 DLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNHERRQTLDLIAALAL
       :. ::.: :: ::. :: : .  :.:  :.::: ::::::::::.:::::::.::. ::.
CCDS34 DIGEQQRKLESYLQNHFVGLED-RKYEYLMTLHGVVNESTVCLMGHERRQTLNLITMLAI
       330       340        350       360       370       380      

           380         390       400       410          420    
pF1KB7 QALAEQG--PAATAALAWRPPGTDGVVPATVNYYVTPVQPLLA---HAYPTWLPCN
       ..::.:.  : .. .  .  :.   .     :::.. :::...   ..: ::::::
CCDS34 RVLADQNVIPNVANVTCYYQPAPYVADANFSNYYIAQVQPVFTCQQQTYSTWLPCN
        390       400       410       420       430       440  

>>CCDS896.1 FAM46C gene_id:54855|Hs108|chr1               (391 aa)
 initn: 1494 init1: 1331 opt: 1586  Z-score: 1763.4  bits: 335.2 E(32554): 6.6e-92
Smith-Waterman score: 1586; 64.0% identity (83.0% similar) in 383 aa overlap (48-424:14-391)

        20        30        40        50        60        70       
pF1KB7 GTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGRGNFPT
                                     .: :.: ::.::  .:.: .::::::::::
CCDS89                  MAEESSCTRDCMSFSVLNWDQVSRLHEVLTEVVPIHGRGNFPT
                                10        20        30        40   

        80        90       100       110       120       130       
pF1KB7 LSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEA
       : .  ..:::.::: ::: :..::.:::.::::.:::  ..::: :::::.:.: : .::
CCDS89 LEITLKDIVQTVRSRLEEAGIKVHDVRLNGSAAGHVLVKDNGLGCKDLDLIFHVALPTEA
            50        60        70        80        90       100   

       140       150       160       170       180       190       
pF1KB7 SFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDSDRWSLISLSNKSGK
        :::.. :::  ::.::: ::.. ::.:.::::::::::::::::.:::::::::::.::
CCDS89 EFQLVRDVVLCSLLNFLPEGVNKLKISPVTLKEAYVQKLVKVCTDTDRWSLISLSNKNGK
           110       120       130       140       150       160   

       200       210       220       230       240       250       
pF1KB7 NVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFTEAL
       :::::::::.:::::::.:::::::::::.: .::..:.:: ::::: :::.:::: ::.
CCDS89 NVELKFVDSIRRQFEFSVDSFQIILDSLLFFYDCSNNPISEHFHPTVIGESMYGDFEEAF
           170       180       190       200       210       220   

       260       270       280       290       300       310       
pF1KB7 EHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVE
       .::..:.:::..:::::::::::: .:::: :::  . ....:.:::::::::::::..:
CCDS89 DHLQNRLIATKNPEEIRGGGLLKYSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILE
           230       240       250       260       270       280   

       320       330        340       350       360       370      
pF1KB7 QRRTLERYLEAHFGGADAAR-RYACLVTLHRVVNESTVCLMNHERRQTLDLIAALALQAL
       :.: :: ::. ::  :.  : .:  :. :.:::::::::::.:::::::.::. :::..:
CCDS89 QQRKLETYLQNHF--AEEERSKYDYLMILRRVVNESTVCLMGHERRQTLNLISLLALRVL
           290         300       310       320       330       340 

        380         390          400       410       420    
pF1KB7 AEQG--PAATAALAWRPPG---TDGVVPATVNYYVTPVQPLLAHAYPTWLPCN
       :::.  :.:: .  .  :.   .::      ::::.      .. ::::::::
CCDS89 AEQNIIPSATNVTCYYQPAPYVSDG---NFSNYYVAHPPVTYSQPYPTWLPCN
             350       360          370       380       390 

>>CCDS14446.1 FAM46D gene_id:169966|Hs108|chrX            (389 aa)
 initn: 1226 init1: 1092 opt: 1281  Z-score: 1424.9  bits: 272.6 E(32554): 4.8e-73
Smith-Waterman score: 1281; 52.5% identity (79.0% similar) in 366 aa overlap (48-411:6-370)

        20        30        40        50        60        70       
pF1KB7 GTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLDALLSEPIPIHGRGNFPT
                                     ...:.: ::  :: .:.: :::::.:::::
CCDS14                          MSEIRFTNLTWDQVITLDQVLDEVIPIHGKGNFPT
                                        10        20        30     

        80        90       100       110       120       130       
pF1KB7 LSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEA
       . :.:..:..::.. :  ::. :...::.::.::..:  ..:..:::::..: :.: .. 
CCDS14 MEVKPKDIIHVVKDQLIGQGIIVKDARLNGSVASYILASHNGISYKDLDVIFGVELPGNE
          40        50        60        70        80        90     

       140       150       160       170       180       190       
pF1KB7 SFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVCTDSDRWSLISLSNKSGK
        ::..: .:: :::::::  :.. :..:  .:.::::::::::.  : ::::::::..::
CCDS14 EFQVVKDAVLDCLLDFLPKDVKKEKLSPDIMKDAYVQKLVKVCNGHDCWSLISLSNNTGK
         100       110       120       130       140       150     

       200       210       220       230       240       250       
pF1KB7 NVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAFHPTVTGESLYGDFTEAL
       :.:::::.:.:::::::.:::::.:: .: : . ... ...  .:.:..::.:::: ::.
CCDS14 NLELKFVSSLRRQFEFSVDSFQIVLDPMLDFYSDKNAKLTKESYPVVVAESMYGDFQEAM
         160       170       180       190       200       210     

       260       270       280       290       300       310       
pF1KB7 EHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVE
        ::.:..: ::.::::::::::::: :::.::.:   .... :.:::::::::::: . :
CCDS14 THLQHKLICTRKPEEIRGGGLLKYCSLLVHGFKPACMSEIKNLERYMCSRFFIDFPHIEE
         220       230       240       250       260       270     

       320       330       340       350       360       370       
pF1KB7 QRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNHERRQTLDLIAALALQALA
       :.. .: ::. :: : ..  .:  :.::: ::::::::::..:::: : ::. .::..:.
CCDS14 QQKKIESYLHNHFIG-EGMTKYDYLMTLHGVVNESTVCLMSYERRQILHLITMMALKVLG
         280       290        300       310       320       330    

       380         390       400       410       420          
pF1KB7 EQG--PAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPTWLPCN      
       : .  : .  .  .  :.   .. :    :: :  :                   
CCDS14 ELNILPNTQKVTCFYQPAPYFAAEARYPIYVIPEPPPVSFQPYHPLHFRGSNGMS
          340       350       360       370       380         




424 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:08:22 2016 done: Fri Nov  4 04:08:23 2016
 Total Scan time:  3.300 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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