Result of FASTA (ccds) for pF1KB5554
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5554, 298 aa
  1>>>pF1KB5554 298 - 298 aa - 298 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4093+/-0.00125; mu= 9.7441+/- 0.074
 mean_var=104.0369+/-19.891, 0's: 0 Z-trim(103.2): 102  B-trim: 179 in 1/49
 Lambda= 0.125742
 statistics sampled from 7193 (7286) to 7193 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.224), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS6172.1 SDCBP gene_id:6386|Hs108|chr8           ( 298) 1923 359.9 1.3e-99
CCDS47862.1 SDCBP gene_id:6386|Hs108|chr8          ( 297) 1904 356.4 1.4e-98
CCDS83298.1 SDCBP gene_id:6386|Hs108|chr8          ( 318) 1904 356.5 1.5e-98
CCDS47863.1 SDCBP gene_id:6386|Hs108|chr8          ( 292) 1865 349.4 1.9e-96
CCDS42848.1 SDCBP2 gene_id:27111|Hs108|chr20       ( 292) 1158 221.1 7.8e-58
CCDS13013.1 SDCBP2 gene_id:27111|Hs108|chr20       ( 207)  993 191.1 6.1e-49


>>CCDS6172.1 SDCBP gene_id:6386|Hs108|chr8                (298 aa)
 initn: 1923 init1: 1923 opt: 1923  Z-score: 1901.6  bits: 359.9 E(32554): 1.3e-99
Smith-Waterman score: 1923; 100.0% identity (100.0% similar) in 298 aa overlap (1-298:1-298)

               10        20        30        40        50        60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
              190       200       210       220       230       240

              250       260       270       280       290        
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
              250       260       270       280       290        

>>CCDS47862.1 SDCBP gene_id:6386|Hs108|chr8               (297 aa)
 initn: 1902 init1: 1401 opt: 1904  Z-score: 1883.0  bits: 356.4 E(32554): 1.4e-98
Smith-Waterman score: 1904; 99.7% identity (99.7% similar) in 298 aa overlap (1-298:1-297)

               10        20        30        40        50        60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
CCDS47 LNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
               70        80         90       100       110         

              130       140       150       160       170       180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
     180       190       200       210       220       230         

              250       260       270       280       290        
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
     240       250       260       270       280       290       

>>CCDS83298.1 SDCBP gene_id:6386|Hs108|chr8               (318 aa)
 initn: 1902 init1: 1401 opt: 1904  Z-score: 1882.6  bits: 356.5 E(32554): 1.5e-98
Smith-Waterman score: 1904; 99.7% identity (99.7% similar) in 298 aa overlap (1-298:22-318)

                                    10        20        30         
pF1KB5                      MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
                            :::::::::::::::::::::::::::::::::::::::
CCDS83 MIKLWTNRDLHIIVMVKNPAKMSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPI
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB5 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS83 PHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQG-LVARPSSINYMVAPVTGN
               70        80        90       100        110         

     100       110       120       130       140       150         
pF1KB5 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVL
     120       130       140       150       160       170         

     160       170       180       190       200       210         
pF1KB5 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKIT
     180       190       200       210       220       230         

     220       230       240       250       260       270         
pF1KB5 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHII
     240       250       260       270       280       290         

     280       290        
pF1KB5 KRMAPSIMKSLMDHTIPEV
       :::::::::::::::::::
CCDS83 KRMAPSIMKSLMDHTIPEV
     300       310        

>>CCDS47863.1 SDCBP gene_id:6386|Hs108|chr8               (292 aa)
 initn: 1821 init1: 1821 opt: 1865  Z-score: 1844.9  bits: 349.4 E(32554): 1.9e-96
Smith-Waterman score: 1865; 98.0% identity (98.0% similar) in 298 aa overlap (1-298:1-292)

               10        20        30        40        50        60
pF1KB5 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
       :::::::::::      :::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSLYPSLEDLK------AQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLS
               10              20        30        40        50    

               70        80        90       100       110       120
pF1KB5 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKD
           60        70        80        90       100       110    

              130       140       150       160       170       180
pF1KB5 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQ
          120       130       140       150       160       170    

              190       200       210       220       230       240
pF1KB5 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICE
          180       190       200       210       220       230    

              250       260       270       280       290        
pF1KB5 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 INGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
          240       250       260       270       280       290  

>>CCDS42848.1 SDCBP2 gene_id:27111|Hs108|chr20            (292 aa)
 initn: 1140 init1: 993 opt: 1158  Z-score: 1151.8  bits: 221.1 E(32554): 7.8e-58
Smith-Waterman score: 1158; 58.4% identity (83.4% similar) in 296 aa overlap (2-297:3-291)

                10        20        30        40        50         
pF1KB5  MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGL
         ::::::::::::..::::.   :.:  ::.  .:.:  :    ::: :  :: .::::
CCDS42 MSSLYPSLEDLKVDQAIQAQV--RASPKMPALPVQATAISP-PPVLYPNL-AELENYMGL
               10        20          30         40         50      

      60        70        80        90       100       110         
pF1KB5 SLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCK
       ::. .:.. ..  .   :   . ..   . . ::::::: ..:.:::::: :.::. :::
CCDS42 SLSSQEVQESLLQI---PEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCK
         60        70           80        90       100       110   

     120       130       140       150       160       170         
pF1KB5 DQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLK
       :. :: ::::...:.:.::::::::.::::::::::::.:::.:..:::::: :::.:.:
CCDS42 DERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVK
           120       130       140       150       160       170   

     180       190       200       210       220       230         
pF1KB5 QAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNIC
       .: :.::....:::::.::.:::::: :::::..:.:::.:.:: ::::::::::.: .:
CCDS42 KASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVC
           180       190       200       210       220       230   

     240       250       260       270       280       290        
pF1KB5 EINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
       :..:::::::::..: .::.:.:.:::.::.:. :.::..:.. : ...  :::.::. 
CCDS42 EVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA
           240       250       260       270       280       290  

>>CCDS13013.1 SDCBP2 gene_id:27111|Hs108|chr20            (207 aa)
 initn: 1013 init1: 993 opt: 993  Z-score: 992.2  bits: 191.1 E(32554): 6.1e-49
Smith-Waterman score: 993; 66.0% identity (92.2% similar) in 206 aa overlap (92-297:1-206)

              70        80        90       100       110       120 
pF1KB5 NEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKDQ
                                     ::::::: ..:.:::::: :.::. ::::.
CCDS13                               MVAPVTGYSLGVRRAEIKPGVREIHLCKDE
                                             10        20        30

             130       140       150       160       170       180 
pF1KB5 DGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA
        :: ::::...:.:.::::::::.::::::::::::.:::.:..:::::: :::.:.:.:
CCDS13 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA
               40        50        60        70        80        90

             190       200       210       220       230       240 
pF1KB5 FGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEI
        :.::....:::::.::.:::::: :::::..:.:::.:.:: ::::::::::.: .::.
CCDS13 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV
              100       110       120       130       140       150

             250       260       270       280       290        
pF1KB5 NGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
       .:::::::::..: .::.:.:.:::.::.:. :.::..:.. : ...  :::.::. 
CCDS13 DGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA
              160       170       180       190       200       




298 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:52:52 2016 done: Fri Nov  4 03:52:52 2016
 Total Scan time:  2.080 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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