Result of FASTA (omim) for pF1KB5463
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5463, 288 aa
  1>>>pF1KB5463 288 - 288 aa - 288 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5749+/-0.000537; mu= 6.1762+/- 0.033
 mean_var=179.7399+/-35.041, 0's: 0 Z-trim(113.3): 63  B-trim: 37 in 1/53
 Lambda= 0.095665
 statistics sampled from 22477 (22537) to 22477 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.264), width:  16
 Scan time:  5.210

The best scores are:                                      opt bits E(85289)
NP_004594 (OMIM: 186590) syntaxin-1A isoform 1 [Ho ( 288) 1803 261.2 1.7e-69
NP_443106 (OMIM: 601485,616172) syntaxin-1B [Homo  ( 288) 1543 225.3 1.1e-58
XP_016878382 (OMIM: 601485,616172) PREDICTED: synt ( 282) 1483 217.0 3.3e-56
NP_001159375 (OMIM: 186590) syntaxin-1A isoform 2  ( 251) 1413 207.3 2.5e-53
XP_016868056 (OMIM: 186590) PREDICTED: syntaxin-1A ( 329) 1413 207.4   3e-53
XP_005274255 (OMIM: 600876) PREDICTED: syntaxin-3  ( 287) 1227 181.7 1.5e-45
XP_016873682 (OMIM: 600876) PREDICTED: syntaxin-3  ( 279) 1203 178.3 1.4e-44
XP_016873681 (OMIM: 600876) PREDICTED: syntaxin-3  ( 279) 1203 178.3 1.4e-44
NP_001971 (OMIM: 132350) syntaxin-2 isoform 1 [Hom ( 287) 1200 177.9 1.9e-44
NP_919337 (OMIM: 132350) syntaxin-2 isoform 2 [Hom ( 288) 1188 176.3 6.1e-44
XP_016874469 (OMIM: 132350) PREDICTED: syntaxin-2  ( 319) 1177 174.8 1.9e-43
XP_016874467 (OMIM: 132350) PREDICTED: syntaxin-2  ( 320) 1165 173.1 5.9e-43
XP_016874468 (OMIM: 132350) PREDICTED: syntaxin-2  ( 320) 1165 173.1 5.9e-43
XP_005253614 (OMIM: 132350) PREDICTED: syntaxin-2  ( 277) 1143 170.1 4.4e-42
NP_004168 (OMIM: 600876) syntaxin-3 isoform 1 [Hom ( 289) 1141 169.8 5.5e-42
XP_005274252 (OMIM: 600876) PREDICTED: syntaxin-3  ( 289) 1141 169.8 5.5e-42
XP_016874471 (OMIM: 132350) PREDICTED: syntaxin-2  ( 309) 1120 166.9 4.3e-41
XP_016873679 (OMIM: 600876) PREDICTED: syntaxin-3  ( 281) 1117 166.5 5.3e-41
XP_016873680 (OMIM: 600876) PREDICTED: syntaxin-3  ( 281) 1117 166.5 5.3e-41
XP_016873677 (OMIM: 600876) PREDICTED: syntaxin-3  ( 281) 1117 166.5 5.3e-41
XP_016873678 (OMIM: 600876) PREDICTED: syntaxin-3  ( 281) 1117 166.5 5.3e-41
XP_016874470 (OMIM: 132350) PREDICTED: syntaxin-2  ( 317) 1116 166.4 6.4e-41
XP_016874472 (OMIM: 132350) PREDICTED: syntaxin-2  ( 260) 1109 165.3 1.1e-40
NP_001171511 (OMIM: 600876) syntaxin-3 isoform 2 [ ( 277) 1103 164.5   2e-40
XP_016873683 (OMIM: 600876) PREDICTED: syntaxin-3  ( 269) 1079 161.2   2e-39
XP_005274257 (OMIM: 600876) PREDICTED: syntaxin-3  ( 252)  934 141.2   2e-33
XP_016873684 (OMIM: 600876) PREDICTED: syntaxin-3  ( 244)  910 137.8 1.9e-32
XP_016874474 (OMIM: 132350) PREDICTED: syntaxin-2  ( 213)  838 127.9 1.7e-29
XP_016874473 (OMIM: 132350) PREDICTED: syntaxin-2  ( 214)  826 126.2 5.4e-29
XP_011543523 (OMIM: 600876) PREDICTED: syntaxin-3  ( 192)  822 125.6 7.3e-29
NP_004595 (OMIM: 186591) syntaxin-4 isoform 3 [Hom ( 297)  785 120.7 3.4e-27
XP_005255578 (OMIM: 186591) PREDICTED: syntaxin-4  ( 293)  715 111.0 2.8e-24
NP_001259025 (OMIM: 186591) syntaxin-4 isoform 2 [ ( 295)  715 111.0 2.8e-24
XP_016874477 (OMIM: 132350) PREDICTED: syntaxin-2  ( 167)  651 102.0 8.4e-22
XP_016874475 (OMIM: 132350) PREDICTED: syntaxin-2  ( 200)  633 99.5 5.3e-21
XP_016874476 (OMIM: 132350) PREDICTED: syntaxin-2  ( 199)  628 98.8 8.6e-21
NP_001259024 (OMIM: 186591) syntaxin-4 isoform 1 [ ( 219)  628 98.9 9.2e-21
XP_016873685 (OMIM: 600876) PREDICTED: syntaxin-3  ( 155)  615 97.0 2.5e-20
XP_011534519 (OMIM: 603552,605014) PREDICTED: synt ( 287)  500 81.3 2.3e-15
NP_003755 (OMIM: 603552,605014) syntaxin-11 [Homo  ( 287)  500 81.3 2.3e-15
XP_011534516 (OMIM: 603552,605014) PREDICTED: synt ( 287)  500 81.3 2.3e-15
XP_011534520 (OMIM: 603552,605014) PREDICTED: synt ( 287)  500 81.3 2.3e-15
XP_016866889 (OMIM: 603552,605014) PREDICTED: synt ( 287)  500 81.3 2.3e-15
XP_011534515 (OMIM: 603552,605014) PREDICTED: synt ( 313)  500 81.4 2.5e-15
XP_011544227 (OMIM: 186591) PREDICTED: syntaxin-4  ( 154)  468 76.7 3.2e-14
XP_016874478 (OMIM: 132350) PREDICTED: syntaxin-2  ( 159)  345 59.7 4.2e-09
NP_001313508 (OMIM: 603217) syntaxin-7 isoform a [ ( 261)  299 53.5 4.9e-07
NP_001313507 (OMIM: 603217) syntaxin-7 isoform a [ ( 261)  299 53.5 4.9e-07
NP_003560 (OMIM: 603217) syntaxin-7 isoform a [Hom ( 261)  299 53.5 4.9e-07
NP_803173 (OMIM: 606892) syntaxin-12 [Homo sapiens ( 276)  291 52.5 1.1e-06


>>NP_004594 (OMIM: 186590) syntaxin-1A isoform 1 [Homo s  (288 aa)
 initn: 1803 init1: 1803 opt: 1803  Z-score: 1368.6  bits: 261.2 E(85289): 1.7e-69
Smith-Waterman score: 1803; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KB5 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA
              190       200       210       220       230       240

              250       260       270       280        
pF1KB5 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVGGIFA
       ::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVGGIFA
              250       260       270       280        

>>NP_443106 (OMIM: 601485,616172) syntaxin-1B [Homo sapi  (288 aa)
 initn: 1461 init1: 1461 opt: 1543  Z-score: 1174.7  bits: 225.3 E(85289): 1.1e-58
Smith-Waterman score: 1543; 84.2% identity (96.8% similar) in 285 aa overlap (1-285:1-284)

               10        20        30        40        50        60
pF1KB5 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
       :::::::::.::::::...: : ::::.:::::::::::::: :.:..:.::.::..:::
NP_443 MKDRTQELRSAKDSDDEEEV-VHVDRDHFMDEFFEQVEEIRGCIEKLSEDVEQVKKQHSA
               10        20         30        40        50         

               70        80        90       100       110       120
pF1KB5 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
       :::.::::::::.:::.: .::::::::::::::.:::::::::::::::::::::::::
NP_443 ILAAPNPDEKTKQELEDLTADIKKTANKVRSKLKAIEQSIEQEEGLNRSSADLRIRKTQH
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
       :::::::::::.::::::: ::.::: ::::::::::::::.::::::::::. :::.. 
NP_443 STLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLAIFTDD
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB5 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA
       : :::...::::.::::::.::::::.:::::::::.::::::::::::::::::::::.
NP_443 IKMDSQMTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHS
     180       190       200       210       220       230         

              250       260       270       280         
pF1KB5 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVGGIFA 
       :::::::::::::::::::::::::::::::::.::.:.::..::    
NP_443 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVVLGVVLASSIGGTLGL
     240       250       260       270       280        

>>XP_016878382 (OMIM: 601485,616172) PREDICTED: syntaxin  (282 aa)
 initn: 1461 init1: 1461 opt: 1483  Z-score: 1130.1  bits: 217.0 E(85289): 3.3e-56
Smith-Waterman score: 1483; 84.0% identity (96.7% similar) in 275 aa overlap (11-285:5-278)

               10        20        30        40        50        60
pF1KB5 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
                 ::::::...: : ::::.:::::::::::::: :.:..:.::.::..:::
XP_016       MEPRAKDSDDEEEV-VHVDRDHFMDEFFEQVEEIRGCIEKLSEDVEQVKKQHSA
                     10         20        30        40        50   

               70        80        90       100       110       120
pF1KB5 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
       :::.::::::::.:::.: .::::::::::::::.:::::::::::::::::::::::::
XP_016 ILAAPNPDEKTKQELEDLTADIKKTANKVRSKLKAIEQSIEQEEGLNRSSADLRIRKTQH
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KB5 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
       :::::::::::.::::::: ::.::: ::::::::::::::.::::::::::. :::.. 
XP_016 STLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITGRTTTNEELEDMLESGKLAIFTDD
           120       130       140       150       160       170   

              190       200       210       220       230       240
pF1KB5 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA
       : :::...::::.::::::.::::::.:::::::::.::::::::::::::::::::::.
XP_016 IKMDSQMTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHS
           180       190       200       210       220       230   

              250       260       270       280         
pF1KB5 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVGGIFA 
       :::::::::::::::::::::::::::::::::.::.:.::..::    
XP_016 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVVLGVVLASSIGGTLGL
           240       250       260       270       280  

>>NP_001159375 (OMIM: 186590) syntaxin-1A isoform 2 [Hom  (251 aa)
 initn: 1413 init1: 1413 opt: 1413  Z-score: 1078.5  bits: 207.3 E(85289): 2.5e-53
Smith-Waterman score: 1413; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KB5 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA
       ::::::::::::::::::::::::::::::::::::::::::::::              
NP_001 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQTMWRGPCLTPRRPS
              190       200       210       220       230       240

              250       260       270       280        
pF1KB5 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVGGIFA
                                                       
NP_001 STRARRAGRKS                                     
              250                                      

>>XP_016868056 (OMIM: 186590) PREDICTED: syntaxin-1A iso  (329 aa)
 initn: 1413 init1: 1413 opt: 1413  Z-score: 1077.0  bits: 207.4 E(85289): 3e-53
Smith-Waterman score: 1413; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KB5 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA
       ::::::::::::::::::::::::::::::::::::::::::::::              
XP_016 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQVSAGPPCPPLQPTP
              190       200       210       220       230       240

              250       260       270       280                    
pF1KB5 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVGGIFA            
                                                                   
XP_016 APRAALTSPFLPDTLPCRGGTKFSGNQSPAVETAARALPTRRSLSSAWLCLSFKDPRPCM
              250       260       270       280       290       300

>>XP_005274255 (OMIM: 600876) PREDICTED: syntaxin-3 isof  (287 aa)
 initn: 521 init1: 521 opt: 1227  Z-score: 939.0  bits: 181.7 E(85289): 1.5e-45
Smith-Waterman score: 1227; 65.9% identity (88.3% similar) in 290 aa overlap (1-288:1-287)

               10          20        30        40        50        
pF1KB5 MKDRTQELRTAKDSDDDDD--VAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKH
       :::: ..:.. . ..:::   : ...:   :::::: ..:: :  ::::.:.:::.:. .
XP_005 MKDRLEQLKAKQLTQDDDTDAVEIAIDNTAFMDEFFSEIEETRLNIDKISEHVEEAKKLY
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB5 SAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKT
       : ::..: :. :::..::.: ..::: ::.::.::::.:. ::..:   ::::::::::.
XP_005 SIILSAPIPEPKTKDDLEQLTTEIKKRANNVRNKLKSMEKHIEEDE--VRSSADLRIRKS
               70        80        90       100         110        

      120       130       140       150       160       170        
pF1KB5 QHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFA
       :::.:::::::::..:: .: :.::: ::::::::::::. ::.::::.::::::::::.
XP_005 QHSVLSRKFVEVMTKYNEAQVDFRERSKGRIQRQLEITGKKTTDEELEEMLESGNPAIFT
      120       130       140       150       160       170        

      180       190       200       210       220       230        
pF1KB5 SGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVE
       :::: ::.:::::::::: ::..:..::.::.::::::::.:::::.::::.: :: :: 
XP_005 SGII-DSQISKQALSEIEGRHKDIVRLESSIKELHDMFMDIAMLVENQGEMLDNIELNVM
      180        190       200       210       220       230       

      240       250       260       270       280        
pF1KB5 HAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVGGIFA
       :.::.::.: ..:::::::::.::.:::::.:::.::.:..:::.:.:::
XP_005 HTVDHVEKARDETKKAVKYQSQARKKKIMIMICCIILAIILASTIGSIFA
       240       250       260       270       280       

>>XP_016873682 (OMIM: 600876) PREDICTED: syntaxin-3 isof  (279 aa)
 initn: 848 init1: 521 opt: 1203  Z-score: 921.3  bits: 178.3 E(85289): 1.4e-44
Smith-Waterman score: 1203; 66.2% identity (88.3% similar) in 281 aa overlap (8-288:2-279)

               10        20        30        40        50        60
pF1KB5 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
              ..   ..:: : : ...:   :::::: ..:: :  ::::.:.:::.:. .: 
XP_016       MMKQLTQDDDTDAVEIAIDNTAFMDEFFSEIEETRLNIDKISEHVEEAKKLYSI
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KB5 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
       ::..: :. :::..::.: ..::: ::.::.::::.:. ::..:   ::::::::::.::
XP_016 ILSAPIPEPKTKDDLEQLTTEIKKRANNVRNKLKSMEKHIEEDE--VRSSADLRIRKSQH
           60        70        80        90         100       110  

              130       140       150       160       170       180
pF1KB5 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
       :.:::::::::..:: .: :.::: ::::::::::::. ::.::::.::::::::::.::
XP_016 SVLSRKFVEVMTKYNEAQVDFRERSKGRIQRQLEITGKKTTDEELEEMLESGNPAIFTSG
            120       130       140       150       160       170  

              190       200       210       220       230       240
pF1KB5 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA
       :: ::.:::::::::: ::..:..::.::.::::::::.:::::.::::.: :: :: :.
XP_016 II-DSQISKQALSEIEGRHKDIVRLESSIKELHDMFMDIAMLVENQGEMLDNIELNVMHT
             180       190       200       210       220       230 

              250       260       270       280        
pF1KB5 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVGGIFA
       ::.::.: ..:::::::::.::.:::::.:::.::.:..:::.:.:::
XP_016 VDHVEKARDETKKAVKYQSQARKKKIMIMICCIILAIILASTIGSIFA
             240       250       260       270         

>>XP_016873681 (OMIM: 600876) PREDICTED: syntaxin-3 isof  (279 aa)
 initn: 848 init1: 521 opt: 1203  Z-score: 921.3  bits: 178.3 E(85289): 1.4e-44
Smith-Waterman score: 1203; 66.2% identity (88.3% similar) in 281 aa overlap (8-288:2-279)

               10        20        30        40        50        60
pF1KB5 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
              ..   ..:: : : ...:   :::::: ..:: :  ::::.:.:::.:. .: 
XP_016       MMKQLTQDDDTDAVEIAIDNTAFMDEFFSEIEETRLNIDKISEHVEEAKKLYSI
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KB5 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
       ::..: :. :::..::.: ..::: ::.::.::::.:. ::..:   ::::::::::.::
XP_016 ILSAPIPEPKTKDDLEQLTTEIKKRANNVRNKLKSMEKHIEEDE--VRSSADLRIRKSQH
           60        70        80        90         100       110  

              130       140       150       160       170       180
pF1KB5 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
       :.:::::::::..:: .: :.::: ::::::::::::. ::.::::.::::::::::.::
XP_016 SVLSRKFVEVMTKYNEAQVDFRERSKGRIQRQLEITGKKTTDEELEEMLESGNPAIFTSG
            120       130       140       150       160       170  

              190       200       210       220       230       240
pF1KB5 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA
       :: ::.:::::::::: ::..:..::.::.::::::::.:::::.::::.: :: :: :.
XP_016 II-DSQISKQALSEIEGRHKDIVRLESSIKELHDMFMDIAMLVENQGEMLDNIELNVMHT
             180       190       200       210       220       230 

              250       260       270       280        
pF1KB5 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVGGIFA
       ::.::.: ..:::::::::.::.:::::.:::.::.:..:::.:.:::
XP_016 VDHVEKARDETKKAVKYQSQARKKKIMIMICCIILAIILASTIGSIFA
             240       250       260       270         

>>NP_001971 (OMIM: 132350) syntaxin-2 isoform 1 [Homo sa  (287 aa)
 initn: 1348 init1: 1172 opt: 1200  Z-score: 918.9  bits: 177.9 E(85289): 1.9e-44
Smith-Waterman score: 1200; 65.9% identity (89.9% similar) in 287 aa overlap (1-283:1-286)

               10        20        30        40        50        60
pF1KB5 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
       :.::  .: ::  ..:: :..:.:..:.:::.::.::::::. ::::.. :::::..:: 
NP_001 MRDRLPDL-TACRKNDDGDTVVVVEKDHFMDDFFHQVEEIRNSIDKITQYVEEVKKNHSI
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB5 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
       ::..:::. : :::::.: ..:::::::.:.:::.::::..:.:. ::.:.:::::.:::
NP_001 ILSAPNPEGKIKEELEDLNKEIKKTANKIRAKLKAIEQSFDQDESGNRTSVDLRIRRTQH
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
       :.:::::::.:.::: .:. .::: ::::::::::::::::..:::.:::::.:.::.: 
NP_001 SVLSRKFVEAMAEYNEAQTLFRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFTSD
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB5 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA
       :: ::.:..:::.:::.::..:.:::.::::::.:::::::.::.:::::. :: :: .:
NP_001 IISDSQITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMINNIERNVMNA
     180       190       200       210       220       230         

              250       260       270           280        
pF1KB5 VDYVERAVSDTKKAVKYQSKARRKKIMIIICC----VILGIVIASTVGGIFA
       .::::.:  .::::.::::::::: ..::::     :::::..:.:.     
NP_001 TDYVEHAKEETKKAIKYQSKARRKLMFIIICVIVLLVILGIILATTLS    
     240       250       260       270       280           

>>NP_919337 (OMIM: 132350) syntaxin-2 isoform 2 [Homo sa  (288 aa)
 initn: 1286 init1: 1170 opt: 1188  Z-score: 909.9  bits: 176.3 E(85289): 6.1e-44
Smith-Waterman score: 1188; 65.5% identity (89.1% similar) in 284 aa overlap (1-284:1-283)

               10        20        30        40        50        60
pF1KB5 MKDRTQELRTAKDSDDDDDVAVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSA
       :.::  .: ::  ..:: :..:.:..:.:::.::.::::::. ::::.. :::::..:: 
NP_919 MRDRLPDL-TACRKNDDGDTVVVVEKDHFMDDFFHQVEEIRNSIDKITQYVEEVKKNHSI
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB5 ILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH
       ::..:::. : :::::.: ..:::::::.:.:::.::::..:.:. ::.:.:::::.:::
NP_919 ILSAPNPEGKIKEELEDLNKEIKKTANKIRAKLKAIEQSFDQDESGNRTSVDLRIRRTQH
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 STLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASG
       :.:::::::.:.::: .:. .::: ::::::::::::::::..:::.:::::.:.::.: 
NP_919 SVLSRKFVEAMAEYNEAQTLFRERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFTSD
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB5 IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA
       :: ::.:..:::.:::.::..:.:::.::::::.:::::::.::.:::::. :: :: .:
NP_919 IISDSQITRQALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMINNIERNVMNA
     180       190       200       210       220       230         

              250       260       270       280         
pF1KB5 VDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIVIASTVGGIFA 
       .::::.:  .::::.:::::::::: .::   :.:  .::  .:     
NP_919 TDYVEHAKEETKKAIKYQSKARRKKWIIIAVSVVLVAIIALIIGLSVGK
     240       250       260       270       280        




288 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:47:18 2016 done: Fri Nov  4 03:47:18 2016
 Total Scan time:  5.210 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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