GENSCAN 1.0	Date run:  4-Nov-116	Time: 03:22:48

Sequence gi568815587r:33759359_33969386 : 210028 bp : 43.01% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -   2076   2071    6                               1.05
 1.04 Term -   7531   7479   53  2  2  108   41    15 0.173  -3.61
 1.03 Intr -   9609   9493  117  1  0   49   79    70 0.223   2.64
 1.02 Intr -  14820  14702  119  2  2   78   49    73 0.406   2.51
 1.01 Init -  15139  15036  104  1  2  110   34   161 0.587  12.47
 1.00 Prom -  21274  21235   40                              -3.76

 2.02 PlyA -  24052  24047    6                               1.05
 2.01 Sngl -  28437  28096  342  0  0   36   42   168 0.666   3.03
 2.00 Prom -  31264  31225   40                              -2.76

 3.00 Prom +  45377  45416   40                               0.14
 3.01 Init +  60311  60383   73  1  1   92   43   140 0.200  11.13
 3.02 Term +  69404  70062  659  0  2   26   42   193 0.029   2.62
 3.03 PlyA +  72421  72426    6                               1.05

 4.04 PlyA -  73005  73000    6                               1.05
 4.03 Term -  73337  73066  272  0  2   76   48   225 0.492  12.95
 4.02 Intr -  73798  73510  289  1  1   35  -28   243 0.555   4.22
 4.01 Init -  74009  73863  147  2  0   34   55    93 0.417   0.69
 4.00 Prom -  80855  80816   40                              -2.86

 5.10 PlyA -  82828  82823    6                               1.05
 5.09 Term - 100217  99998  220  1  1  100   47   238 0.999  17.41
 5.08 Intr - 105459 105244  216  2  0   89   80   402 0.875  37.12
 5.07 Intr - 109571 109479   93  1  0   38   76   112 0.004   4.08
 5.06 Intr - 110263 109988  276  0  0   78   89   196 0.005  15.33
 5.05 Intr - 111201 110987  215  0  2   46   34   100 0.001  -2.09
 5.04 Intr - 130100 129977  124  1  1   99   77    66 0.085   7.19
 5.03 Intr - 135339 135312   28  1  1  120   44    13 0.012  -2.73
 5.02 Intr - 143299 143210   90  2  0   86   68    64 0.075   4.17
 5.01 Init - 145730 145646   85  2  1   78   66    25 0.070   0.28
 5.00 Prom - 159621 159582   40                              -3.36

 6.05 PlyA - 164800 164795    6                               1.05
 6.04 Term - 182205 182068  138  0  0  120   52    94 0.668   6.96
 6.03 Intr - 189515 189466   50  0  2  103   84   -39 0.026  -4.40
 6.02 Intr - 195266 195201   66  0  0   78   82    77 0.627   4.98
 6.01 Init - 201860 201809   52  2  1   57   59    68 0.256   2.12

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  43240  43124  117  1  0   66   48   104 0.873   2.74
S.002 Intr - 105571 105495   77  1  2  109   81   -11 0.959  -1.39
S.003 Init - 105827 105756   72  2  0   67   72    93 0.955   6.67
S.004 Term + 109427 110350  924  1  0   59   37   443 0.940  28.48


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587r:33759359_33969386|GENSCAN_predicted_peptide_1|130_aa
MAAMETETAPLTLESLPTDPLLLILSFLDYRDLIKYEKRRDISLPGLGEAHLQEKEVVAL
VPHRRAPRTPAGPADTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKVPVLWGF
AMSWNRIKAL

>gi568815587r:33759359_33969386|GENSCAN_predicted_CDS_1|393_bp
atggcggccatggagaccgagacggcgccgctgaccctagagtcgctgcccaccgatccc
ctgctcctcatcttatcctttttggactatcgggatctaatcaagtatgagaagcgacga
gatatctctctcccaggcctcggtgaggcccacttgcaagagaaggaggtagtggccctc
gtgccgcaccgccgcgctccgcggacccccgctggccccgcagatacttactctgatgta
ggaagatacattgaccattatgctgctattaaaaaggcctgggatgatctcaagaaatat
ttggagcccaggtgtcctcggatggttttatctctgaaagtgccagttctctggggcttt
gccatgagttggaataggataaaggctctttga

>gi568815587r:33759359_33969386|GENSCAN_predicted_peptide_2|113_aa
MTCVEQEKLGQAFEDAFEVLRQHSTGDLQYSPDYKNYLALINHRPHVKGNSSCYGVLPTE
EPVYNWRMVINSAADFYFEGNIHQSLQNITENQLVQPTVLQQKGKRQEEALTV

>gi568815587r:33759359_33969386|GENSCAN_predicted_CDS_2|342_bp
atgacatgtgttgaacaagagaagctgggtcaagcatttgaggatgcttttgaggttctg
aggcaacattcaactggagatcttcagtactcgccagattacaaaaattacctggcttta
atcaaccatcgtcctcatgtcaaaggaaattccagctgctatggagtgttgcctacagag
gagcctgtctataattggagaatggtaattaacagtgctgcggacttctattttgaagga
aatattcatcaatctctgcagaacataactgaaaaccagctggtacaacccactgttctc
cagcaaaaggggaaaaggcaggaagaagctctgactgtttga

>gi568815587r:33759359_33969386|GENSCAN_predicted_peptide_3|243_aa
MTLSLVYTIVLTIAKTPKPFSGLFHSVKSMISLRAENKPSLRCIWEGASLAVLRGWLDLV
LLSELEDPIPEQPLDETRPWDPARSPGGASKASLEPRSGAEENFGPGLGSPYPGHHLISP
PLSPGPHKGIKPGPSSLPPLRPPVPPPFLAFARDEVAGDVPKAGRRCLPLGAPARLAVTL
QPRAAARDSPHRASKEPGFESCPSLSARQAVPEPGPSASQGGGRGRPPHLDPRTPGRNPK
PQR

>gi568815587r:33759359_33969386|GENSCAN_predicted_CDS_3|732_bp
atgaccctctcgctggtgtacaccatcgtcctcaccattgccaagacccccaagcccttc
tctggattatttcatagcgtcaaatccatgatcagtctccgtgcagagaacaagccctct
ctgcgttgcatttgggaaggggcctcccttgctgttctgcggggctggctggatcttgtt
ctcctctccgagttggaggaccccattcctgagcagccgctggacgaaacccggccctgg
gatcccgcgaggtccccgggaggcgcctcaaaagccagcctggagccccgcagcggggcg
gaggagaattttgggcccgggcttgggtccccgtaccccgggcatcacctaatatcacca
cccctctccccgggtccccacaaaggcatcaagccaggcccctcgtcactgcctccactg
cgccctcctgtccctcctcctttcctcgccttcgcgcgggacgaagtggccggcgatgtc
ccgaaagcggggcgtcggtgcctccccctcggcgccccagctcggctcgcggtgaccctg
cagcccagggccgcagccagggactccccacaccgagcctccaaagagccaggcttcgaa
agctgcccgtccctgtcagcgcggcaggcggtcccggagccaggtcccagcgcctcccaa
ggcggggggagggggcggcccccacacctggacccgcggacacctgggcggaaccccaag
ccgcagcgatag

>gi568815587r:33759359_33969386|GENSCAN_predicted_peptide_4|235_aa
MFAYCCSVKIHTSTFELLESIFCILLVVEAFSLQKVVEMLEEVVVSRRECWLCDIRLGIV
VERNWALSVDQCRLQALQFLVQLIDLPSILLRCNGFSGIQKAIVDQTSSSPPNSDHDLFF
GANLALGSALELLLGPVTEVVIASCLPNNSRMVDAEFFGNFSCSCKRMSFSDGSQLVIVS
FRRLATTFLTFKALVSFAKLLAPPPHCMFVSSSWAKRTADVASCLRCLTTHFELK

>gi568815587r:33759359_33969386|GENSCAN_predicted_CDS_4|708_bp
atgtttgcttattgctgtagtgtaaaaatccatacttcaacatttgaactcttggaaagc
attttctgcatcctgctggttgtggaagcgttttccttgcaaaaagttgtcgagatgctt
gaagaagtggtagtcagtcgacgagagtgttggttgtgtgacatacggctgggcattgtc
gtggagaggaattgggctctttctgttgaccagtgccggctgcaggcattgcagtttttg
gtgcagctcatcgatttgccgagcatacttctcagatgtaatggtttctctgggattcag
aaagctatagtggatcagaccagcagcagcccaccaaacagtgaccatgacctttttttt
ggcgcaaatttggctttgggaagtgctttggagcttcttctgggtccagtcactgaggtg
gtcatcgccagttgtctgccgaacaacagtaggatggtcgacgctgagtttttcggcaac
ttctcatgtagttgtaagaggatgagcttcagtgatggctctcaattagtcattgtcagc
ttccgacggctggccactacattcctcaccttcaaggctcttgtctcctttgcaaaactt
cttgcaccaccaccgcactgtatgtttgttagcagttcctgggccaaacgcactgctgat
gttgcgagctgtctccgctgccttacaacccattttgaactcaaataa

>gi568815587r:33759359_33969386|GENSCAN_predicted_peptide_5|448_aa
MGTATEKYCSLNVHPWGQGKSGYGKKCAGGDIKAGYKASGKTWFSVSLVIALPTHPCPDV
AQELAELCVTALSGTTELLSDSVERMLLPGPYLAWRVWLRAHLCSGLAKPVQSRLAHHHR
LCRARPQPGARSPEPAAWGPQPVARSPQSRAVRGIPVHGVRGPGTSNLGRAENPLGTLAF
LPVIRSLSLAFEGSAVTVLERGGASSPAERRSKRRRRSGGDGGGGGGARAPEGVRAPAAG
QPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEGTFQVAASGVPNGRLPGPQVEPLPALR
ITGGEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRR
LYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFC
VGDRYLLINSDIVCEQDIYEWTKINGMI

>gi568815587r:33759359_33969386|GENSCAN_predicted_CDS_5|1347_bp
atgggaaccgcgactgagaagtattgctctctaaatgttcacccctggggtcaaggcaaa
tctggctatggaaaaaaatgtgcaggtggagatattaaagcaggatataaggcatcagga
aaaacctggttttctgtatccctggtcattgctctgccaactcacccctgcccagatgtg
gctcaagaacttgcagagttatgtgtgactgctttgtctggcacaacagaactgctcagc
gattctgttgaacggatgctgctgcctggcccgtatctggcctggagagtctggctgcga
gctcatctgtgctctggtctggctaagcccgtgcagtcccggctggcgcaccaccatcgc
ctctgcagagcgcggccgcagcccggagcccgcagcccggagcccgcagcctggggcccg
cagcccgtagcccgcagcccgcagagccgcgctgtccggggcatcccagtgcacggcgtc
cgtggacctgggacctcgaacctgggacgggcggaaaatccactgggaacacttgcattt
ctcccggtgattcgctctctctctttggcgtttgaagggagcgcggtgactgtccttgag
cgcggaggggcgagctcgccggcggagcgccggagcaagcggaggcgcaggagcggcggc
gacggcggcggcggcggcggcgcccgagcacccgagggggtccgagccccggcagccggc
cagccccgcgccacaaagggagcgcccccgccgcccggcaccccgcctccctccccaatg
tcctcggccatcgaaaggaagagcctggacccttcagagggaacattccaagtggcggcc
tccggggtccccaacggccgccttcccggtccgcaggtggagccgctgccagccttgcgg
ataacgggcggggaaccagtggatgaggtgctgcagatccccccatccctgctgacatgc
ggcggctgccagcagaacattggggaccgctacttcctgaaggccatcgaccagtactgg
cacgaggactgcctgagctgcgacctctgtggctgccggctgggtgaggtggggcggcgc
ctctactacaaactgggccggaagctctgccggagagactatctcaggctttttgggcaa
gacggtctctgcgcatcctgtgacaagcggattcgtgcctatgagatgacaatgcgggtg
aaagacaaagtgtatcacctggaatgtttcaaatgcgccgcctgtcagaagcatttctgt
gtaggtgacagatacctcctcatcaactctgacatagtgtgcgaacaggacatctacgag
tggactaagatcaatgggatgatatag

>gi568815587r:33759359_33969386|GENSCAN_predicted_peptide_6|101_aa
MIKMIDNDDSNVDGEGQAVAIFASLGSTDLEEQQICTSECDLQSTCHSATSHSLVSVMMT
SNLVNDFSCKCVPNSYDSMCFGAGGTRLYVYWLCDFEKSIL

>gi568815587r:33759359_33969386|GENSCAN_predicted_CDS_6|306_bp
atgataaaaatgatcgataatgatgatagcaatgttgatggtgaaggtcaagcggtggcc
atttttgcttcgctgggctccacggatctggaggagcaacagatctgcacatctgaatgt
gatctccaatccacctgccactctgctacttcccacagtctagttagtgtcatgatgaca
agcaacctggttaatgatttcagttgtaaatgtgtccctaactcctacgacagcatgtgc
tttggagctggaggaaccaggctctatgtttactggctgtgtgactttgagaagtccatt
ctttga