Result of FASTA (ccds) for pF1KB5018
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5018, 362 aa
  1>>>pF1KB5018 362 - 362 aa - 362 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0345+/-0.000896; mu= -2.3369+/- 0.055
 mean_var=247.2334+/-50.124, 0's: 0 Z-trim(114.9): 10  B-trim: 0 in 0/54
 Lambda= 0.081568
 statistics sampled from 15477 (15484) to 15477 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.476), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS59358.1 RAD23A gene_id:5886|Hs108|chr19        ( 362) 2344 288.1 8.2e-78
CCDS12289.1 RAD23A gene_id:5886|Hs108|chr19        ( 363) 2332 286.6 2.2e-77
CCDS59357.1 RAD23A gene_id:5886|Hs108|chr19        ( 308) 1731 215.9 3.7e-56
CCDS59138.1 RAD23B gene_id:5887|Hs108|chr9         ( 337)  694 93.9 2.2e-19
CCDS6769.1 RAD23B gene_id:5887|Hs108|chr9          ( 409)  467 67.2 2.8e-11


>>CCDS59358.1 RAD23A gene_id:5886|Hs108|chr19             (362 aa)
 initn: 2344 init1: 2344 opt: 2344  Z-score: 1510.4  bits: 288.1 E(32554): 8.2e-78
Smith-Waterman score: 2344; 100.0% identity (100.0% similar) in 362 aa overlap (1-362:1-362)

               10        20        30        40        50        60
pF1KB5 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAGENPLEFLRDQPQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAGENPLEFLRDQPQF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD
              310       320       330       340       350       360

         
pF1KB5 DE
       ::
CCDS59 DE
         

>>CCDS12289.1 RAD23A gene_id:5886|Hs108|chr19             (363 aa)
 initn: 1444 init1: 1444 opt: 2332  Z-score: 1502.8  bits: 286.6 E(32554): 2.2e-77
Smith-Waterman score: 2332; 99.7% identity (99.7% similar) in 363 aa overlap (1-362:1-363)

               10        20        30        40        50        60
pF1KB5 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
              130       140       150       160       170       180

              190       200       210       220        230         
pF1KB5 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEA-GENPLEFLRDQPQ
       :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS12 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQ
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB5 FQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB5 VGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF
              310       320       330       340       350       360

     360  
pF1KB5 DDE
       :::
CCDS12 DDE
          

>>CCDS59357.1 RAD23A gene_id:5886|Hs108|chr19             (308 aa)
 initn: 1681 init1: 1444 opt: 1731  Z-score: 1121.6  bits: 215.9 E(32554): 3.7e-56
Smith-Waterman score: 1851; 84.6% identity (84.6% similar) in 363 aa overlap (1-362:1-308)

               10        20        30        40        50        60
pF1KB5 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
              130       140       150       160       170       180

              190       200       210       220        230         
pF1KB5 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEA-GENPLEFLRDQPQ
       :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS59 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQ
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB5 FQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE
       :::::::::::::::::::::::::::::::                             
CCDS59 FQNMRQVIQQNPALLPALLQQLGQENPQLLQ-----------------------------
              250       260       270                              

     300       310       320       330       340       350         
pF1KB5 VGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF
                                 ::::::::::::::::::::::::::::::::::
CCDS59 --------------------------LKALGFPESLVIQAYFACEKNENLAANFLLSQNF
                                       280       290       300     

     360  
pF1KB5 DDE
       :::
CCDS59 DDE
          

>>CCDS59138.1 RAD23B gene_id:5887|Hs108|chr9              (337 aa)
 initn: 1012 init1: 360 opt: 694  Z-score: 461.5  bits: 93.9 E(32554): 2.2e-19
Smith-Waterman score: 1020; 54.1% identity (72.9% similar) in 340 aa overlap (48-362:1-337)

        20        30        40        50        60         70      
pF1KB5 RMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYR-IDEKNFVVVMV
                                     ..   : .:  .:    .    .. .:.  
CCDS59                               MVTKPKAVSTPAPATTQQSAPASTTAVTSS
                                             10        20        30

         80        90       100       110        120       130     
pF1KB5 TKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPE
       : : ..:. .  :  .::..: : :   :: ... :.: :: : ....:.:. : :    
CCDS59 TTTTVAQAPTPVPALAPTSTPASIT---PASATASSEPAPASAAKQEKPAEKPAETPVAT
               40        50           60        70        80       

         140       150          160       170       180       190  
pF1KB5 SVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPH
       : ...  .::.:.:    :::.:.::::. ::.:.:::::::::::.:.::::::.::: 
CCDS59 SPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPD
        90       100       110       120       130       140       

            200             210           220               230    
pF1KB5 RAVEYLLTGIPGSPE------PEH----GSVQESQVSEQPATE--------AGENPLEFL
       ::::::: ::::. :      : .    :. : : :.   ::         .: .:::::
CCDS59 RAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFL
       150       160       170       180       190       200       

          240       250       260       270       280       290    
pF1KB5 RDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADIS
       :.:::::.:::.:::::.::::::::.:.::::::::::.:::.::::::::  : .  .
CCDS59 RNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQG
       210       220       230       240       250       260       

           300        310       320       330       340       350  
pF1KB5 DVEGE-VGAIGEEAP-QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAAN
          :   :.:.: .  .::::::::::::::::::::::::.::::::::::::::::::
CCDS59 GGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN
       270       280       290       300       310       320       

            360  
pF1KB5 FLLSQNFDDE
       :::.::::..
CCDS59 FLLQQNFDED
       330       

>>CCDS6769.1 RAD23B gene_id:5887|Hs108|chr9               (409 aa)
 initn: 1398 init1: 400 opt: 467  Z-score: 315.9  bits: 67.2 E(32554): 2.8e-11
Smith-Waterman score: 1261; 58.5% identity (74.9% similar) in 390 aa overlap (5-345:3-392)

               10        20        30        40        50        60
pF1KB5 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
           .:::::::::::: ..:.::::.::::::.:::.:::::::::::::::::.::. 
CCDS67   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA
                 10        20        30        40        50        

               70        80                                90      
pF1KB5 IRDYRIDEKNFVVVMVTKTKA----GQGT---SAP-----------------PEASPTAA
       ...:.::::::::::::: ::    . .:   :::                 :   :. :
CCDS67 LKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALA
       60        70        80        90       100       110        

        100        110        120       130       140       150    
pF1KB5 PESS-TSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPESVSGSVPSSGSSGRE---E
       : :. .:. :: ... :.: :: : ....:.:. : :    : ...  .::.:.:    :
CCDS67 PTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE
      120       130       140       150       160       170        

             160       170       180       190       200           
pF1KB5 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPE----
       ::.:.::::. ::.:.:::::::::::.:.::::::.::: ::::::: ::::. :    
CCDS67 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV
      180       190       200       210       220       230        

         210           220               230       240       250   
pF1KB5 --PEH----GSVQESQVSEQPATE--------AGENPLEFLRDQPQFQNMRQVIQQNPAL
         : .    :. : : :.   ::         .: .::::::.:::::.:::.:::::.:
CCDS67 VDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL
      240       250       260       270       280       290        

           260       270       280       290        300        310 
pF1KB5 LPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE-VGAIGEEAP-QMN
       :::::::.:.::::::::::.:::.::::::::  : .  .   :   :.:.: .  .::
CCDS67 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN
      300       310       320       330       340       350        

             320       330       340       350       360  
pF1KB5 YIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE
       ::::::::::::::::::::::.:::::::::::                 
CCDS67 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
      360       370       380       390       400         




362 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:21:09 2016 done: Fri Nov  4 03:21:09 2016
 Total Scan time:  3.380 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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