Result of FASTA (ccds) for pF1KB4735
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4735, 384 aa
  1>>>pF1KB4735 384 - 384 aa - 384 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1952+/-0.000847; mu= 16.7417+/- 0.051
 mean_var=63.9875+/-12.721, 0's: 0 Z-trim(106.6): 23  B-trim: 43 in 1/49
 Lambda= 0.160334
 statistics sampled from 9047 (9069) to 9047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.279), width:  16
 Scan time:  1.940

The best scores are:                                      opt bits E(32554)
CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22     ( 384) 2801 656.7 9.7e-189
CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22      ( 382) 1471 349.1 3.9e-96
CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22    ( 373) 1258 299.8 2.6e-81
CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22    ( 199)  820 198.3 4.9e-51
CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22      ( 357)  524 130.0 3.2e-30
CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22     ( 190)  513 127.3 1.1e-29
CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22    ( 386)  511 127.0 2.8e-29
CCDS41747.1 AICDA gene_id:57379|Hs108|chr12        ( 198)  402 101.7 6.2e-22
CCDS33649.1 APOBEC3F gene_id:200316|Hs108|chr22    ( 101)  397 100.3 7.9e-22
CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22    ( 183)  349 89.4 2.9e-18
CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22    ( 182)  344 88.2 6.3e-18
CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22    ( 200)  344 88.2 6.9e-18
CCDS81662.1 AICDA gene_id:57379|Hs108|chr12        ( 188)  330 85.0 6.1e-17
CCDS8579.1 APOBEC1 gene_id:339|Hs108|chr12         ( 236)  307 79.7   3e-15
CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6        ( 224)  294 76.7 2.3e-14
CCDS54532.1 APOBEC3H gene_id:164668|Hs108|chr22    ( 154)  250 66.4 1.9e-11


>>CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22          (384 aa)
 initn: 2801 init1: 2801 opt: 2801  Z-score: 3502.0  bits: 656.7 E(32554): 9.7e-189
Smith-Waterman score: 2801; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384)

               10        20        30        40        50        60
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP
              310       320       330       340       350       360

              370       380    
pF1KB4 WDGLDEHSQDLSGRLRAILQNQEN
       ::::::::::::::::::::::::
CCDS13 WDGLDEHSQDLSGRLRAILQNQEN
              370       380    

>>CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22           (382 aa)
 initn: 1336 init1: 572 opt: 1471  Z-score: 1839.4  bits: 349.1 E(32554): 3.9e-96
Smith-Waterman score: 1471; 56.6% identity (75.2% similar) in 387 aa overlap (1-384:1-382)

               10        20        30        40         50         
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRGQVY
       :.:..:: .::::::::  :: :.:::  :. .::::::: : : :    :. .::::::
CCDS13 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB4 SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF
        . .:: :: :. ::    .:   . ...::..::.::  :.  .: ::.: :.::::: 
CCDS13 FKPQYHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS
               70         80        90       100       110         

     120       130       140       150       160       170         
pF1KB4 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP
       .:::::.:. ::..::  : :   : :.:  ::.:.:: .:: .:::.. . : :: .. 
CCDS13 AARLYYYWERDYRRALCRLSQA--GARVT--IMDYEEFAYCWENFVYNEGQQFMPWYKFD
     120       130       140           150       160       170     

     180       190       200       210       220       230         
pF1KB4 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR
       . : .::  : ::::. ::: ::::::::.: :  :..:::::::::. : ::::..:. 
CCDS13 ENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHM
         180       190       200       210       220       230     

     240       250       260       270       280       290         
pF1KB4 GFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAK
       :::::.: .    . :::::: :::..:  .::  : :::: : :::::::  :: :.  
CCDS13 GFLCNEAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRA
         240       250       260       270       280       290     

       300       310       320       330       340       350       
pF1KB4 FISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCP
       :...: :: : ::.::::: .   .:.:. : .:::..:::::.::..:::::: .::::
CCDS13 FLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP
         300       310       320       330       340       350     

       360       370       380    
pF1KB4 FQPWDGLDEHSQDLSGRLRAILQNQEN
       :::::::.:::: :::::::::::: :
CCDS13 FQPWDGLEEHSQALSGRLRAILQNQGN
         360       370       380  

>>CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22         (373 aa)
 initn: 1306 init1: 460 opt: 1258  Z-score: 1573.2  bits: 299.8 E(32554): 2.6e-81
Smith-Waterman score: 1258; 50.8% identity (72.8% similar) in 386 aa overlap (1-380:1-373)

               10        20        30        40        50        60
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV
       . ..: :: :. ::    .:   . ...::..::.::  :.  .: :::: :.::::: .
CCDS33 QPEHHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA
               70         80        90       100       110         

              130       140       150       160       170       180
pF1KB4 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK
       :::::.:. ::..::  : :   : :  .:::. .:: .:: .::::. . : :: ..  
CCDS33 ARLYYYWERDYRRALCRLSQA--GAR--VKIMDDEEFAYCWENFVYSEGQPFMPWYKFDD
     120       130       140           150       160       170     

              190          200       210       220       230       
pF1KB4 YYILLHIMLGEILRHSMD---PPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQ
        : .::  : ::::. :.   :  : :.:.:   . ::.:..::. .: ... . :  . 
CCDS33 NYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPV--SW
         180       190       200       210       220       230     

       240        250       260       270       280       290      
pF1KB4 RRGFLCNQA-PHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMA
       .:: . ::. :. :      ::: :::. .    :. . .:.:: .::::::  :: :.:
CCDS33 KRGVFRNQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVA
           240            250       260       270       280        

        300       310         320       330       340       350    
pF1KB4 KFISKNKHVSLCIFTARIYD--DQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQ
       .:......:.: :::::.:   :    :::::.:.. ::.. :: :..::.::..:: ..
CCDS33 EFLARHSNVNLTIFTARLYYFWDTDY-QEGLRSLSQEGASVEIMGYKDFKYCWENFVYND
      290       300       310        320       330       340       

          360       370       380    
pF1KB4 GCPFQPWDGLDEHSQDLSGRLRAILQNQEN
         ::.:: ::  .   :...:. ::.    
CCDS33 DEPFKPWKGLKYNFLFLDSKLQEILE    
       350       360       370       

>>CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22         (199 aa)
 initn: 828 init1: 471 opt: 820  Z-score: 1029.8  bits: 198.3 E(32554): 4.9e-51
Smith-Waterman score: 820; 65.3% identity (77.2% similar) in 193 aa overlap (194-384:10-199)

           170       180       190       200       210       220   
pF1KB4 FVYSQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYE
                                     :: :::  :: ::::     :::.::::::
CCDS13                      MEASPASGPRHLMDPHIFTSNFNNGI---GRHKTYLCYE
                                    10        20           30      

           230       240       250       260       270       280   
pF1KB4 VERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFT
       :::. : : : ..:.:::: ::: .    . :::::: :::..:  .::  : :::: : 
CCDS13 VERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFI
         40        50        60        70        80        90      

           290         300       310       320       330       340 
pF1KB4 SWSPCFS--CAQEMAKFISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYS
       :::::::  :: :.  :...: :: : ::.::::: .   .:.:. : .:::..:::::.
CCDS13 SWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYD
        100       110       120       130       140       150      

             350       360       370       380    
pF1KB4 EFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN
       :::::::::::::::::::::::::::: :::::::::::: :
CCDS13 EFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLRAILQNQGN
        160       170       180       190         

>>CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22           (357 aa)
 initn: 1252 init1: 431 opt: 524  Z-score: 655.9  bits: 130.0 E(32554): 3.2e-30
Smith-Waterman score: 1350; 53.7% identity (71.1% similar) in 387 aa overlap (1-384:1-357)

               10        20        30        40         50         
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRGQVY
       :.:..:: .::::::::  :: :.:::  :. .::::::: : : :    :. .::::::
CCDS58 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB4 SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF
        . .:: :: :. ::    .:   . ...::..::.::  :.  .: ::.: :.::::: 
CCDS58 FKPQYHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS
               70         80        90       100       110         

     120       130       140       150       160       170         
pF1KB4 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP
       .:::::.:. ::..::  : :   : :.:  ::.:.:: .:: .:::.. . : :: .. 
CCDS58 AARLYYYWERDYRRALCRLSQA--GARVT--IMDYEEFAYCWENFVYNEGQQFMPWYKFD
     120       130       140           150       160       170     

     180       190       200       210       220       230         
pF1KB4 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR
       . : .::  : ::::. ::: ::::::::.: :  :..:::::::::. : ::::..:. 
CCDS58 ENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHM
         180       190       200       210       220       230     

     240       250       260       270       280       290         
pF1KB4 GFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAK
       :::::.                         ::  : :::: : :::::::  :: :.  
CCDS58 GFLCNE-------------------------LDPAQIYRVTWFISWSPCFSWGCAGEVRA
         240                                250       260       270

       300       310       320       330       340       350       
pF1KB4 FISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCP
       :...: :: : ::.::::: .   .:.:. : .:::..:::::.::..:::::: .::::
CCDS58 FLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP
              280       290       300       310       320       330

       360       370       380    
pF1KB4 FQPWDGLDEHSQDLSGRLRAILQNQEN
       :::::::.:::: :::::::::::: :
CCDS58 FQPWDGLEEHSQALSGRLRAILQNQGN
              340       350       

>>CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22          (190 aa)
 initn: 478 init1: 275 opt: 513  Z-score: 646.3  bits: 127.3 E(32554): 1.1e-29
Smith-Waterman score: 513; 43.6% identity (67.2% similar) in 195 aa overlap (1-194:1-190)

               10        20        30        40         50         
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPPLDAKIFRGQVY
       :.:..:: .. ::  :: ..: :    . :: .:::. :.  :  :     . .::.:: 
CCDS13 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB4 SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF
       :: . : :  :. ::     :  . .:.:::: :::::  :. ..: :::.  .:.::::
CCDS13 SETHCHAERCFLSWFCD-DILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIF
               70         80        90       100       110         

     120       130       140       150       160       170         
pF1KB4 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP
       .::::::  : :::.:::: :  .:  ....::.:..:..:: .:::.. : :.::..: 
CCDS13 TARLYYFQYPCYQEGLRSLSQ--EG--VAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLK
     120       130       140           150       160       170     

     180       190       200       210       220       230         
pF1KB4 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR
         . ::.  : : :.                                             
CCDS13 TNFRLLKRRLRESLQ                                             
         180       190                                             

>>CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22         (386 aa)
 initn: 845 init1: 296 opt: 511  Z-score: 639.2  bits: 127.0 E(32554): 2.8e-29
Smith-Waterman score: 531; 40.2% identity (65.9% similar) in 229 aa overlap (157-380:165-386)

        130       140       150       160       170       180      
pF1KB4 WDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPKYYILLH
                                     : .:: .:: .. . : :: ..   :  ::
CCDS46 LYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLH
          140       150       160       170       180       190    

        190          200       210       220       230       240   
pF1KB4 IMLGEILRHSMD---PPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLC
         : ::::. :.   :  : :.:.:   . ::.:..::. .:  .. . :.  ..:: . 
CCDS46 RTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVF--RKRGVFR
          200       210       220       230       240         250  

            250       260       270       280       290       300  
pF1KB4 NQA-PHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKN
       ::. :. :      ::: :::. .    :. . .:.:: .::::::  :: :.:.:....
CCDS46 NQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARH
            260            270       280       290       300       

            310        320       330       340       350       360 
pF1KB4 KHVSLCIFTARI-YDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPW
       ..:.: :::::. :  .   :::: .:.. ::...:: :..:  :: .::  .  ::.::
CCDS46 SNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPW
       310       320       330       340       350       360       

             370       380    
pF1KB4 DGLDEHSQDLSGRLRAILQNQEN
        ::. . . :. ::: :::    
CCDS46 KGLQTNFRLLKRRLREILQ    
       370       380          

>--
 initn: 394 init1: 187 opt: 443  Z-score: 554.2  bits: 111.3 E(32554): 1.5e-24
Smith-Waterman score: 443; 44.4% identity (66.9% similar) in 169 aa overlap (1-156:1-164)

               10        20        30        40         50         
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRG---
       :.:..:: .::::::::  :: :.:::  :. .::::::: : : :    :. .:::   
CCDS46 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
               10        20        30        40        50        60

                  60        70        80        90       100       
pF1KB4 ---------QVYSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATF
                .:: ... : :: :. ::   : :  ......::..::.::  :.  .. :
CCDS46 PKRQSNHRQEVYFRFENHAEMCFLSWFCGNR-LPANRRFQITWFVSWNPCLPCVVKVTKF
               70        80        90        100       110         

       110       120       130       140       150       160       
pF1KB4 LAEDPKVTLTIFVARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYS
       ::: :.::::: .:::::. : :.. .:  :  .. : :  .:::.:..           
CCDS46 LAEHPNVTLTISAARLYYYRDRDWRWVLLRL--HKAGAR--VKIMDYEDFAYCWENFVCN
     120       130       140       150           160       170     

       170       180       190       200       210       220       
pF1KB4 QRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERM
                                                                   
CCDS46 EGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTM
         180       190       200       210       220       230     

>>CCDS41747.1 AICDA gene_id:57379|Hs108|chr12             (198 aa)
 initn: 459 init1: 207 opt: 402  Z-score: 507.2  bits: 101.7 E(32554): 6.2e-22
Smith-Waterman score: 491; 44.3% identity (68.6% similar) in 185 aa overlap (197-379:6-180)

        170       180       190       200       210       220      
pF1KB4 SQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVER
                                     :.   : ..:.:  :..::.:::::: :.:
CCDS41                          MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKR
                                        10        20        30     

        230       240       250       260       270       280      
pF1KB4 MHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWS
          :. . ..   :.: :.        .: :.:: ::  :  : ::  . :::: :::::
CCDS41 --RDSATSFSLDFGYLRNK--------NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWS
            40        50                60        70        80     

        290       300       310         320       330       340    
pF1KB4 PCFSCAQEMAKFISKNKHVSLCIFTARIY--DDQGRCQEGLRTLAEAGAKISIMTYSEFK
       ::..::...: :.  : ..:: :::::.:  .:.    :::: : .::..:.:::.... 
CCDS41 PCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYF
          90       100       110       120       130       140     

          350       360       370       380                 
pF1KB4 HCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN             
       .::.:::...   :. :.:: :.:  :: .:: ::                  
CCDS41 YCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
         150       160       170       180       190        

>>CCDS33649.1 APOBEC3F gene_id:200316|Hs108|chr22         (101 aa)
 initn: 397 init1: 397 opt: 397  Z-score: 505.4  bits: 100.3 E(32554): 7.9e-22
Smith-Waterman score: 397; 98.3% identity (98.3% similar) in 58 aa overlap (1-58:1-58)

               10        20        30        40        50        60
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::  
CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV
                                                                   
CCDS33 SFIRAPFQVLSSPFGQCAPPHGTAQVQWPPQLTAGREQGRP                   
               70        80        90       100                    

>>CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22         (183 aa)
 initn: 352 init1: 219 opt: 349  Z-score: 441.5  bits: 89.4 E(32554): 2.9e-18
Smith-Waterman score: 363; 33.9% identity (60.8% similar) in 189 aa overlap (201-381:8-183)

              180       190       200       210          220       
pF1KB4 LFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRH---ETYLCYEVERM
                                     :: ..:::.  .:  .   .. :::..  .
CCDS13                        MALLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQ
                                      10        20        30       

       230       240       250       260       270       280       
pF1KB4 HNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSP
       ...:       ::.. :.           :::.::.. :    ::  : :.:::. .:::
CCDS13 NGST-----PTRGYFENKKKC--------HAEICFINEIKSMGLDETQCYQVTCYLTWSP
        40             50                60        70        80    

       290       300       310       320        330       340      
pF1KB4 CFSCAQEMAKFISKNKHVSLCIFTARIYDDQGRCQE-GLRTLAEAGAKISIMTYSEFKHC
       : ::: :.. ::. . :..: ::..:.:    . :. ::: :  . . . .: . ::  :
CCDS13 CSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPEFADC
           90       100       110       120       130       140    

        350           360       370       380    
pF1KB4 WDTFVDHQG----CPFQPWDGLDEHSQDLSGRLRAILQNQEN
       :..::::.      :..  . ::..:. .. ::. : :.   
CCDS13 WENFVDHEKPLSFNPYKMLEELDKNSRAIKRRLERIKQS   
          150       160       170       180      




384 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:12:07 2016 done: Fri Nov  4 03:12:07 2016
 Total Scan time:  1.940 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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