GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:57:19

Sequence gi568815595f:48141172_48368783 : 227612 bp : 45.75% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.14 PlyA -   1776   1771    6                               1.05
 1.13 Term -  17914  17774  141  1  0  111   55   226 0.999  19.53
 1.12 Intr -  18284  18173  112  1  1   83  110    53 0.999   7.38
 1.11 Intr -  23266  23136  131  1  2   74   84   127 0.998  10.39
 1.10 Intr -  24563  24465   99  2  0   90   86   187 0.999  19.01
 1.09 Intr -  24722  24660   63  2  0   89   87    19 0.637   0.81
 1.08 Intr -  26773  26675   99  1  0   85   86    78 0.951   7.61
 1.07 Intr -  33286  33113  174  1  0   55   88    80 0.917   4.84
 1.06 Intr -  36271  36200   72  1  0   90   70    22 0.509   0.20
 1.05 Intr -  36817  36683  135  1  0   89   81   139 0.910  14.06
 1.04 Intr -  39723  39550  174  0  0   65   80    78 0.636   4.84
 1.03 Intr -  41859  41758  102  0  0   69   82    81 0.806   5.97
 1.02 Intr -  42665  42629   37  1  1   78   95   -24 0.480  -4.44
 1.01 Init -  46776  46607  170  0  2  105  110   207 0.999  22.91
 1.00 Prom -  50540  50501   40                              -3.66

 2.05 PlyA -  50986  50981    6                               1.05
 2.04 Term -  64220  64112  109  1  1   94   39    88 0.254   2.48
 2.03 Intr -  65188  65124   65  1  2  131   27    44 0.127   0.12
 2.02 Intr -  74290  74207   84  1  0  114   72    81 0.298   9.12
 2.01 Init -  74692  74489  204  1  0   72   96   102 0.862   8.25
 2.00 Prom -  75860  75821   40                              -7.66

 3.00 Prom +  82289  82328   40                              -6.16
 3.01 Init +  82341  82541  201  2  0  100   89   402 0.809  38.38
 3.02 Intr +  83183  83290  108  1  0   71   60   125 0.997   8.48
 3.03 Intr +  83432  83503   72  1  0   77  113    71 0.981   8.10
 3.04 Term +  84122  84253  132  1  0   64   36   108 0.686   1.29
 3.05 PlyA +  84293  84298    6                               1.05

 4.00 Prom +  90715  90754   40                              -5.96
 4.01 Init +  93303  93434  132  2  0   49  110   182 0.527  16.71
 4.02 Intr + 115450 115572  123  0  0   99    8    84 0.016   2.28
 4.03 Intr + 119642 119768  127  1  1   34   82    34 0.015  -2.35
 4.04 Intr + 126744 127600  857  1  2   99   -6   260 0.077   8.78
 4.05 Term + 127742 128611  870  1  0   53   45   406 0.118  25.44
 4.06 PlyA + 132264 132269    6                               1.05

 5.11 PlyA - 133714 133709    6                               1.05
 5.10 Term - 147678 147620   59  1  2  123   39    23 0.120  -1.25
 5.09 Intr - 153632 153510  123  0  0  112   22   123 0.266   8.66
 5.08 Intr - 154064 153904  161  1  2   88  100   201 0.995  20.93
 5.07 Intr - 154987 154948   40  2  1   99   80     6 0.883  -1.82
 5.06 Intr - 155658 155556  103  0  1   39   97    98 0.664   5.55
 5.05 Intr - 178155 178109   47  1  2   53  100    33 0.016  -0.87
 5.04 Intr - 187220 187104  117  0  0   39   97    88 0.340   5.24
 5.03 Intr - 188057 187982   76  2  1   55  103    43 0.004   1.59
 5.02 Intr - 191090 190946  145  1  1    8   15   160 0.033   0.98
 5.01 Init - 208510 208455   56  1  2   83  113    33 0.541   6.06
 5.00 Prom - 218901 218862   40                              -3.16


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  69547  69870  324  0  0   72   55   185 0.802   9.61
S.002 Sngl - 115767 115525  243  0  0   89   41   175 0.834   6.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:48141172_48368783|GENSCAN_predicted_peptide_1|502_aa
MELGPEPPHRRRLLFACSPPPASQPVVKALFGASAAGGLSPVTNLTVTMDQLQGLGSLEN
PMRRIHSLPQKLLGCSPALKRSHSDSLDHDIFQLIDPDENKENLRPELVFMDSRCLNYVL
QEAFEFKKPVRPVSRGCLHSHGLQEGKDLFTQRQNSAPARMLSSNERDSSEPGNFIPLFT
PQSPVTATLSDEDDGFVDLLDGENLKNEEETPSCMASLWTAPLVMRTTNLDNRCKLFDSP
SLCSSSTRSVLKRPERSQEESPPGSTKRRKSMSGASPKESTNPEKAHETLHQSLSLASSP
KGTIENILDNDPRDLIGDFSKGYLFHTVAGKHQDLKYISPEIMASVLNGKFANLIKEFVI
IDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMC
RYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFKEDLKKFR
TKSRTWAGEKSKREMYSRLKKL

>gi568815595f:48141172_48368783|GENSCAN_predicted_CDS_1|1509_bp
atggaactgggcccggagcccccgcaccgccgccgcctgctcttcgcctgcagcccccct
cccgcgtcgcagcccgtcgtgaaggcgctatttggcgcttcagccgccgggggactgtcg
cctgtcaccaacctgaccgtcactatggaccagctgcagggtctgggcagccttgaaaat
cctatgagaagaatacattccctacctcagaagctgttgggatgtagtccagctctgaag
aggagccattctgattctcttgaccatgacatctttcagctcatcgacccagatgagaac
aaggaaaatctgaggcctgagttggttttcatggacagtagatgtctcaactatgtcttg
caggaagcctttgagtttaagaagccagtaagacctgtatctcgtggctgcctgcactct
catggactccaggagggtaaagatctcttcacacagaggcagaactctgccccagctcgg
atgctttcctcaaatgaaagagatagcagtgaaccagggaatttcattcctctttttaca
ccccagtcacctgtgacagccactttgtctgatgaggatgatggcttcgtggaccttctc
gatggagagaatctgaagaatgaggaggagaccccctcgtgcatggcaagcctctggaca
gctcctctcgtcatgagaactacaaaccttgacaaccgatgcaagctgtttgactcccct
tccctgtgtagctccagcactcggtcagtgttgaagagaccagaacgatctcaagaggag
tctccacctggaagtacaaagaggaggaagagcatgtctggggccagccccaaagagtca
actaatccagagaaggcccatgagactcttcatcagtctttatccctggcatcttccccc
aaaggaaccattgagaacattttggacaatgacccaagggaccttataggagacttctcc
aagggttatctctttcatacagttgctgggaaacatcaggatttaaaatacatctctcca
gaaattatggcatctgttttgaatggcaagtttgccaacctcattaaagagtttgttatc
atcgactgtcgatacccatatgaatacgagggaggccacatcaagggtgcagtgaacttg
cacatggaagaagaggttgaagacttcttattgaagaagcccattgtacctactgatggc
aagcgtgtcattgttgtgtttcactgcgagttttcttctgagagaggtccccgcatgtgc
cggtatgtgagagagagagatcgcctgggtaatgaataccccaaactccactaccctgag
ctgtatgtcctgaaggggggatacaaggagttctttatgaaatgccagtcttactgtgag
ccccctagctaccggcccatgcaccacgaggactttaaagaagacctgaagaagttccgc
accaagagccggacctgggcaggggagaagagcaagagggagatgtacagtcgtctgaag
aagctctga

>gi568815595f:48141172_48368783|GENSCAN_predicted_peptide_2|153_aa
MRATDKSLEQGPLSRKRQNQDLDSMPPPTNLAVLLMGTCGRIQALPPALCSKLEMQMWAA
MRVEIWDRQVKNCRGYFSAAEDPKKLPICESQNFAGAVPLLLWLLKTRNKDSKETLGKIR
STPSYPNLAGNWELGELACALLSSPVPLEPMQA

>gi568815595f:48141172_48368783|GENSCAN_predicted_CDS_2|462_bp
atgagggccacagataaatcacttgaacaaggacccctatccagaaaacggcagaaccag
gacttggactcaatgcccccacccaccaaccttgctgtccttctcatggggacatgtgga
agaattcaagccctgcctcctgccctctgcagcaaactggaaatgcagatgtgggctgcc
atgagggtggaaatatgggacaggcaagtgaagaactgccgggggtacttcagtgctgct
gaggaccccaagaagttgcccatctgtgaatcccaaaactttgctggggctgtacccctg
ctcctctggctgcttaagaccaggaacaaagactccaaggagactctgggcaaaattagg
agcacccccagctacccgaacctagcgggcaactgggaacttggagagctggcctgtgcc
ctcctctccagcccagtgcccttggaacccatgcaggcatag

>gi568815595f:48141172_48368783|GENSCAN_predicted_peptide_3|170_aa
MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYRLLD
LDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGS
FDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES

>gi568815595f:48141172_48368783|GENSCAN_predicted_CDS_3|513_bp
atgaagacccaaagggatggccactccctggggcggtggtcactggtgctcctgctgctg
ggcctggtgatgcctctggccatcattgcccaggtcctcagctacaaggaagctgtgctt
cgtgctatagatggcatcaaccagcggtcctcggatgctaacctctaccgcctcctggac
ctggaccccaggcccacgatggatggggacccagacacgccaaagcctgtgagcttcaca
gtgaaggagacagtgtgccccaggacgacacagcagtcaccagaggattgtgacttcaag
aaggacgggctggtgaagcggtgtatggggacagtgaccctcaaccaggccaggggctcc
tttgacatcagttgtgataaggataacaagagatttgccctgctgggtgatttcttccgg
aaatctaaagagaagattggcaaagagtttaaaagaattgtccagagaatcaaggatttt
ttgcggaatcttgtacccaggacagagtcctag

>gi568815595f:48141172_48368783|GENSCAN_predicted_peptide_4|702_aa
MNTVAADYTGLTAPFMTLVAAHEKRPFKDEHRWNRQVKQTHAGQACDLSGQHASMGLDEL
AKQQNIIIVLLVVQVPVADGALARGGPVTFEDVAVLFTEAEWKRLSLEQRNLYKEVMLEN
LRNLVSLAESKPEVHTCPSCPLAFGSQQFLSQDELHNHPIPGFHAGNQLHPGNPCPEDQP
QSQHPSDKNHRGAEAEDQRVEGGVRPLFWSTNERGALVGFSSLFQRPPISSWGGNRILEI
QLSPAQNASSEEVDRISKRAETPGFGAVTFGECALAFNQKSNLFRQKAVTAEKSSDKRQS
QVCRECGRGFSRKSQLIIHQRTHTGEKPYVCGECGRGFIVESVLRNHLSTHSGEKPYVCS
HCGRGFSCKPYLIRHQRTHTREKSFMCTVCGRGFREKSELIKHQRIHTGDKPYWTHSEVK
PHVCEECGHGFSQKSSLKSHRRTHSGEKPYVCGECGRGFSRRIVLNGHWRTHTGEKPYTC
FECGRNFSLKSALSVHQRIHSGEKPYACTECGQGFITKSQLIRHQRTHTGEKPYVCGECG
RGFIAQSTLHYHRSTHSKEKPYVCSQCGRGFCDKSTLLAHEQTHSGEKPYVCGECGRGFG
RKILLNRHWRTHTGEKPYACIECGRNFSHKSTLSLHQRIHSGEKPYACVECGQSFRRKSQ
LIIHQKIHSGKSFRGARSEDVILATSQPSATPAEMLREKPCL

>gi568815595f:48141172_48368783|GENSCAN_predicted_CDS_4|2109_bp
atgaacactgtggcagcagactacactggactcacagccccgttcatgactcttgtggct
gcccatgaaaaacgaccattcaaagatgaacatcgatggaatcgacaagttaaacagacc
catgctggccaggcctgtgatctttcggggcagcatgcctccatggggctggatgaactg
gctaagcagcaaaacatcatcatagttttacttgtggttcaggttccagtggcagatggg
gcactggccagagggggaccagtgactttcgaggatgtggctgtgcttttcactgaggca
gagtggaagagactgagccttgagcagaggaacctatacaaagaagtgatgctggaaaat
ctcaggaatctggtctcattggcagaatcaaagccagaagtccatacctgcccttcttgc
cctctggcctttggcagtcagcagttcctcagccaagatgagctacacaatcatcctatt
ccaggtttccatgcaggaaatcaactccacccaggaaatccctgcccagaggatcagcca
cagtcacaacatccttctgataaaaatcacaggggggctgaagcagaagatcaacgagtg
gaaggaggcgtcagacccttgttttggagtacaaatgaaaggggggctttagtgggtttc
tctagcctgttccagagaccaccaataagctcttggggaggcaacagaatattagagata
cagctcagtccagcccagaatgcaagctctgaggaagtagacagaatttccaagagggca
gaaaccccagggtttggagcagtcacgtttggggagtgtgcactagcttttaaccagaag
tcaaacctgttcagacagaaggcagtcacagcagaaaaatcttcagacaaaaggcagtca
caggtgtgcagggagtgtgggcgaggctttagcaggaagtcacagctcatcatacaccag
aggacacacacaggagaaaagccttatgtctgcggagagtgtgggcgaggctttatagtt
gagtcagtcctccgcaaccacctgagtacacactccggggagaaaccttatgtgtgcagc
cattgtgggcgaggctttagctgcaagccatacctcatcagacatcagaggacacacaca
agggagaaatcgtttatgtgcacagtgtgtgggcgaggctttcgtgaaaagtcagagctc
attaagcaccagagaattcacacgggggataagccttattggacacattcagaggtgaaa
cctcacgtgtgtgaggagtgtgggcatggatttagccagaagtcgtcgctcaaatcacat
cggagaacacactcaggggagaagccttatgtgtgtggggaatgtgggcggggatttagc
cggaggatagtcctcaatggacactggaggacacacacgggagagaagccttacacgtgc
tttgagtgtgggcgaaactttagcctcaagtccgctcttagtgtacatcagaggatacac
tctggggagaagccttatgcatgcacggagtgtgggcaaggctttatcacgaaatcacag
ctcatcagacaccagaggacacacacaggagaaaagccttatgtctgcggagagtgtggg
cgaggctttatagctcagtcaaccctccactaccaccggagtacacactccaaggaaaaa
ccttatgtgtgcagccagtgtgggcgaggcttttgtgataaatcaactctcctcgcacac
gagcagacacattcaggggagaagccttatgtgtgtggggaatgtgggcggggatttggc
cggaagatactcctcaacagacactggaggacacacacaggagagaaaccttacgcatgc
atcgagtgtgggcgaaactttagccacaagtccactctcagcttacatcagaggatacac
tcgggggagaagccttatgcatgcgtggagtgtgggcaaagctttaggagaaagtcacag
ctcatcatacaccagaagatacactcggggaaaagctttagaggtgcaaggagtgaggat
gtgattttagcaacaagtcagccatcagccacaccagcggaaatgcttagggagaagcct
tgtttgtaa

>gi568815595f:48141172_48368783|GENSCAN_predicted_peptide_5|308_aa
MHSLITPVIQVDHRHPPATDQKEQAELDKRDKKKATALVMAFRQVDFGGSGKVKGWANRM
PNRDLIPFIMNKLSTKTILFSQFLRATMGVTADVCPTSKVAYFHSSSVTMKGICSDAILV
LATSMWMAFAIGTCDPIQTMQKQKSTKAVHQQILSNKFLIVRMRELLWRKEDCQRFYREH
EGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTD
TRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGPNLNVLSIGR
PSYILQSN

>gi568815595f:48141172_48368783|GENSCAN_predicted_CDS_5|927_bp
atgcacagcctcattactcctgtcatacaagtggaccatcgtcatcctccagccacagat
cagaaggagcaggcagaactggacaaacgggataaaaagaaggccaccgctttagtcatg
gccttcaggcaagtggactttggaggctctggaaaagtgaaaggctgggcaaatcgaatg
cctaatagggatttgattccattcattatgaacaaactatcaacaaaaaccatcctgttc
agccagtttctcagagcaaccatgggagtcacagcagatgtttgtcctacatcaaaagtt
gcatatttccacagttcttctgtcaccatgaaggggatctgctcagacgccatccttgtt
ctagctacctccatgtggatggcctttgcaattggtacatgtgatcctattcagacaatg
cagaaacagaaatccactaaggctgttcatcagcagattctaagcaacaagttcctgatt
gtacgaatgagagaactactgtggagaaaggaagattgccagaggttttaccgagagcat
gaagggcgttttttctatcagaggctggtggagttcatggccagcgggccaatccgagcc
tacatccttgcccacaaggatgccatccagctctggaggacgctcatgggacccaccaga
gtgttccgagcacgccatgtggccccagattctatccgtgggagtttcggcctcactgac
acccgcaacaccacccatggttcggactctgtggtttcagccagcagagagattgcagcc
ttcttccctgacttcagtgaacagcgctggtatgaggaggaagagccccagttgcgctgt
ggccctgtgtgctatagcccagagggaggtcccaacttaaatgtactttccataggaagg
ccttcctacatcctgcagtccaactag