Result of FASTA (ccds) for
pF1KB4054
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4054, 138 aa
1>>>pF1KB4054 138 - 138 aa - 138 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7889+/-0.000666; mu= 7.5784+/- 0.041
mean_var=132.9736+/-25.911, 0's: 0 Z-trim(116.0): 12 B-trim: 71 in 2/51
Lambda= 0.111222
statistics sampled from 16566 (16578) to 16566 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.835), E-opt: 0.2 (0.509), width: 16
Scan time: 1.630
The best scores are: opt bits E(32554)
CCDS42731.1 BCL2L11 gene_id:10018|Hs108|chr2 ( 138) 965 164.3 2.2e-41
CCDS2089.1 BCL2L11 gene_id:10018|Hs108|chr2 ( 198) 678 118.4 2.1e-27
CCDS74559.1 BCL2L11 gene_id:10018|Hs108|chr2 ( 98) 519 92.6 5.9e-20
CCDS56131.1 BCL2L11 gene_id:10018|Hs108|chr2 ( 80) 509 90.9 1.5e-19
CCDS2092.1 BCL2L11 gene_id:10018|Hs108|chr2 ( 112) 508 90.9 2.2e-19
CCDS56135.1 BCL2L11 gene_id:10018|Hs108|chr2 ( 172) 462 83.7 5.1e-17
CCDS74560.1 BCL2L11 gene_id:10018|Hs108|chr2 ( 169) 461 83.5 5.6e-17
>>CCDS42731.1 BCL2L11 gene_id:10018|Hs108|chr2 (138 aa)
initn: 965 init1: 965 opt: 965 Z-score: 856.5 bits: 164.3 E(32554): 2.2e-41
Smith-Waterman score: 965; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KB4 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR
70 80 90 100 110 120
130
pF1KB4 MVILRLLRYIVRLVWRMH
::::::::::::::::::
CCDS42 MVILRLLRYIVRLVWRMH
130
>>CCDS2089.1 BCL2L11 gene_id:10018|Hs108|chr2 (198 aa)
initn: 951 init1: 678 opt: 678 Z-score: 605.5 bits: 118.4 E(32554): 2.1e-27
Smith-Waterman score: 678; 100.0% identity (100.0% similar) in 97 aa overlap (42-138:102-198)
20 30 40 50 60 70
pF1KB4 CDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQAFNHYLSAM
::::::::::::::::::::::::::::::
CCDS20 PFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAM
80 90 100 110 120 130
80 90 100 110 120 130
pF1KB4 ASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPRMVILRLLRYIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 ASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPRMVILRLLRYIV
140 150 160 170 180 190
pF1KB4 RLVWRMH
:::::::
CCDS20 RLVWRMH
>>CCDS74559.1 BCL2L11 gene_id:10018|Hs108|chr2 (98 aa)
initn: 508 init1: 508 opt: 519 Z-score: 471.8 bits: 92.6 E(32554): 5.9e-20
Smith-Waterman score: 519; 80.2% identity (87.5% similar) in 96 aa overlap (1-90:1-96)
10 20 30 40 50 60
pF1KB4 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 CQAFNHYLSAM-----ASMRQAEPADMR-PEIWIAQELRRIGDEFNAYYARRVFLNNYQA
::::::::::: .:.: : ... : :.:.
CCDS74 CQAFNHYLSAMDDSAGSSLRIALHREVQWPLKWLAKSS
70 80 90
120 130
pF1KB4 AEDHPRMVILRLLRYIVRLVWRMH
>>CCDS56131.1 BCL2L11 gene_id:10018|Hs108|chr2 (80 aa)
initn: 508 init1: 508 opt: 509 Z-score: 464.3 bits: 90.9 E(32554): 1.5e-19
Smith-Waterman score: 509; 93.6% identity (96.2% similar) in 78 aa overlap (1-78:1-76)
10 20 30 40 50 60
pF1KB4 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR
::::::::::: .:. :
CCDS56 CQAFNHYLSAM--VREIEEVVV
70 80
>>CCDS2092.1 BCL2L11 gene_id:10018|Hs108|chr2 (112 aa)
initn: 518 init1: 508 opt: 508 Z-score: 461.4 bits: 90.9 E(32554): 2.2e-19
Smith-Waterman score: 508; 100.0% identity (100.0% similar) in 71 aa overlap (1-71:1-71)
10 20 30 40 50 60
pF1KB4 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR
:::::::::::
CCDS20 CQAFNHYLSAMVVILEDIGDLSLCFGFIFTGLDLYGHHHSQDTEQLNHKDFS
70 80 90 100 110
>>CCDS56135.1 BCL2L11 gene_id:10018|Hs108|chr2 (172 aa)
initn: 735 init1: 462 opt: 462 Z-score: 419.0 bits: 83.7 E(32554): 5.1e-17
Smith-Waterman score: 462; 97.1% identity (98.5% similar) in 68 aa overlap (42-109:102-169)
20 30 40 50 60 70
pF1KB4 CDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQAFNHYLSAM
::::::::::::::::::::::::::::::
CCDS56 PFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAM
80 90 100 110 120 130
80 90 100 110 120 130
pF1KB4 ASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPRMVILRLLRYIV
:::::::::::::::::::::::::::::::::::. :
CCDS56 ASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRMPLPPD
140 150 160 170
pF1KB4 RLVWRMH
>>CCDS74560.1 BCL2L11 gene_id:10018|Hs108|chr2 (169 aa)
initn: 734 init1: 461 opt: 461 Z-score: 418.3 bits: 83.5 E(32554): 5.6e-17
Smith-Waterman score: 461; 98.5% identity (100.0% similar) in 66 aa overlap (42-107:102-167)
20 30 40 50 60 70
pF1KB4 CDREGRQLQPAERPPQLRPGAPTSLQTEPQDRSPAPMSCDKSTQTPSPPCQAFNHYLSAM
::::::::::::::::::::::::::::::
CCDS74 PFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAFNHYLSAM
80 90 100 110 120 130
80 90 100 110 120 130
pF1KB4 ASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPRMVILRLLRYIV
:::::::::::::::::::::::::::::::::::.
CCDS74 ASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRLEK
140 150 160
pF1KB4 RLVWRMH
138 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:49:50 2016 done: Fri Nov 4 02:49:51 2016
Total Scan time: 1.630 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]