GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:45:13

Sequence gi568815585r:77798203_78018573 : 220371 bp : 37.25% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3630   3723   94  2  1   26   90    78 0.036   0.42
 1.02 Term +  16502  16797  296  0  2   53   55   248 0.966  12.48
 1.03 PlyA +  17211  17216    6                               1.05

 2.05 PlyA -  17349  17344    6                               1.05
 2.04 Term -  22923  22587  337  2  1   67   49   161 0.125   3.16
 2.03 Intr -  28041  27919  123  2  0   25   56   110 0.064   0.28
 2.02 Intr -  29840  29675  166  0  1  115   50    64 0.646   3.40
 2.01 Init -  53828  53729  100  2  1   90  100    70 0.686   8.89
 2.00 Prom -  71844  71805   40                              -5.25

 3.03 PlyA -  73467  73462    6                               1.05
 3.02 Term -  74452  74369   84  1  0   86   48    82 0.022   0.67
 3.01 Init -  75074  75024   51  2  0   76   55    67 0.023   3.57
 3.00 Prom -  82078  82039   40                              -3.65

 4.11 PlyA -  83040  83035    6                               1.05
 4.10 Term -  84724  84659   66  1  0   79   39   109 0.431   2.06
 4.09 Intr - 105158 104954  205  1  1   73   99   175 0.993  15.38
 4.08 Intr - 105405 105293  113  0  2   71   75    70 0.920   2.26
 4.07 Intr - 109078 109043   36  1  0  111   86    23 0.686   1.94
 4.06 Intr - 113008 112952   57  1  0  109   72    35 0.753   2.16
 4.05 Intr - 120422 119889  534  2  0  106   98   496 0.858  44.59
 4.04 Intr - 123251 123208   44  0  2   47   69    29 0.009  -6.06
 4.03 Intr - 126259 126185   75  2  0  103  100    42 0.944   5.47
 4.02 Intr - 127691 127542  150  0  0   78   22   131 0.527   4.71
 4.01 Init - 128438 128303  136  2  1   53   57   113 0.936   5.05
 4.00 Prom - 129755 129716   40                              -5.45

 5.04 PlyA - 129916 129911    6                               1.05
 5.03 Term - 138990 138694  297  0  0  -12   53   245 0.534   5.28
 5.02 Intr - 139578 139544   35  1  2  103  100    41 0.839   3.82
 5.01 Init - 153748 153682   67  1  1   42  106    65 0.918   4.99
 5.00 Prom - 154375 154336   40                              -6.55

 6.00 Prom + 160075 160114   40                              -7.95
 6.01 Init + 161102 161363  262  1  1   70   71   136 0.615   7.37
 6.02 Intr + 163765 164012  248  2  2   43   41   164 0.323   3.46
 6.03 Term + 164829 166205 1377  2  0   20   54   374 0.720  17.51
 6.04 PlyA + 166573 166578    6                               1.05

 7.03 PlyA - 167661 167656    6                               1.05
 7.02 Term - 174841 174645  197  2  2   42   37   171 0.835   3.99
 7.01 Init - 178458 178353  106  0  1   69   90    83 0.897   7.03
 7.00 Prom - 181322 181283   40                              -6.55

 8.00 Prom + 186169 186208   40                              -6.75
 8.01 Init + 188741 188914  174  1  0   51   80   117 0.719   6.60
 8.02 Term + 190342 190545  204  0  0   65   53   137 0.944   4.29
 8.03 PlyA + 191142 191147    6                               1.05

 9.04 PlyA - 193322 193317    6                               1.05
 9.03 Term - 197802 197734   69  0  0  126   54    56 0.929   2.96
 9.02 Intr - 208883 208793   91  1  1   62   51    89 0.019   1.68
 9.01 Init - 219975 219968    8  0  2   88   89    11 0.402   0.97

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 123303 123208   96  0  0   67   69    48 0.898   1.16
S.002 Term - 126062 125950  113  0  2   52   48   107 0.806   0.84
S.003 Term - 152318 151765  554  0  2   28   42   182 0.845   1.09


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585r:77798203_78018573|GENSCAN_predicted_peptide_1|129_aa
VSGTVLYTVNTTRSKGSKVLDLAELTSYWSTDSDSLDKSGKGKLKTFWKGFTILDVTKKI
HDSLEELKISTLKGIWKRFISTLLDDFEGFETSVEEVPADIVEIARELELEVEPEDVTEF
LQSHDKTNG

>gi568815585r:77798203_78018573|GENSCAN_predicted_CDS_1|390_bp
gtatcaggcactgttctgtacactgtaaataccactagaagcaaaggcagcaaagtgctt
gaccttgcggagcttacatcctactggagcacagacagtgattcccttgataagtctggg
aaaggaaaattgaaaaccttctggaaaggattcaccattctagatgtcactaagaaaatt
catgattcattggaggagctcaaaatatcaacattaaaaggaatttggaagaggtttatt
tcaaccctcctggatgactttgaggggtttgagacttcagtggaggaagtacctgcagat
attgtagaaatagcaagagaactagaattagaagtggagcctgaagatgtgactgaattc
ctgcaatctcatgataaaactaatggatga

>gi568815585r:77798203_78018573|GENSCAN_predicted_peptide_2|241_aa
MVLTSTWPPGSLRKLTIMAEGKGGAGKSHGENRSTSYASVPKISRAANVELYPARGPEHA
PSFSRWNILSHFPSSHQPLCLNDFNKSVRRTFSPWEQSDIHFPGLPIAEVEECDLGFANA
LKMETQERAPVAALSTKPHLVIIMSGIINIHLGTQRIFRDPFSLQVGNIIGDPGTLNDLN
YQIVEPLVAGGGLALKSWSPLGYKISLGAKDVLGPVSLFRTHKSGSQEEIEVTTPPPKLF
K

>gi568815585r:77798203_78018573|GENSCAN_predicted_CDS_2|726_bp
atggtgctgacatccacttggcctccagggagcctcaggaagcttacaatcatggcagaa
ggcaaaggaggagcaggcaagtcacatggtgaaaacagaagcacatcatatgcttctgta
cctaaaatctccagggctgcaaatgtggaactctacccagccagaggacctgaacatgcg
ccatcattctctcgctggaatatcctctcccacttcccttcttctcatcagccactgtgc
ctaaatgatttcaacaaatccgtcaggaggactttctccccgtgggagcagtcagatatt
cactttcctggccttcctatagctgaggtcgaggaatgtgacttgggctttgccaacgct
ctcaagatggagactcaggaaagagcaccagtggctgctttatctactaaacctcatctt
gttataatcatgagtggtataattaacattcatcttggaacacaaagaatatttagggat
ccttttagtctacaagtaggaaatataataggagatcctggtacgctaaatgacctaaat
tatcaaattgtggaacccctagtggcagggggtggccttgctttgaaatcctggtctcct
ctaggctataagatctcacttggagctaaggatgtactgggacctgtgtccctcttcagg
actcataaatcaggatctcaagaagaaatagaagtcaccacacctcctccaaaattattc
aaatga

>gi568815585r:77798203_78018573|GENSCAN_predicted_peptide_3|44_aa
MLPLAALVSRSAVAALEDDDDDDDMMAVMKTIIMITKYLIASFY

>gi568815585r:77798203_78018573|GENSCAN_predicted_CDS_3|135_bp
atgcttccactggcagctctggtcagcaggtcggcagtagcagcccttgaggatgatgat
gatgatgatgatatgatggcagtgatgaagacaattatcatgatcacaaaatatttaata
gccagtttttattga

>gi568815585r:77798203_78018573|GENSCAN_predicted_peptide_4|471_aa
MWESLELPRDLSNGFDKNADSDMNNKVQAEVVSDGDEELVGNWSKGYSLASGCFRGPALI
VCVFSRRTVQDVGKSTTLGSGGRWPSSDSSSRRCPRYLAPVTLAMSPSNASFALSAALIR
KNNTELEDKHQRINEALKLRSGHRTPSGAGSSMQPPPSLCGRALVALVLACGLSRIWGEE
RGFPPDRATPLLQTAEIMTPPTKTLWPKGSNASLARSLAPAEVPKGDRTAGSPPRTISPP
PCQGPIEIKETFKYINTVVSCLVFVLGIIGNSTLLRIIYKNKCMRNGPNILIASLALGDL
LHIVIDIPINVYKISPVILEDPAQISELIIGQALKRLDNGHPPRLLAEDWPFGAEMCKLV
PFIQKASVGITVLSLCALSIDRYRAVASWSRIKGIGVPKWTAVEIVLIWVVSVVLAVPEA
IGFDIITMDYKGSYLRICLLHPVQKTAFMQPILYEDDENEDLYDDPLPLIE

>gi568815585r:77798203_78018573|GENSCAN_predicted_CDS_4|1416_bp
atgtgggaaagtttggaacttcctagagacttgtcgaatggctttgacaaaaatgctgat
agtgatatgaataataaggtccaggctgaggtggtctcagatggagatgaggaacttgtt
gggaactggagcaaagggtacagcctcgcctctggctgctttcgtgggccggcattgatt
gtctgcgtcttttccaggcgcacggtgcaagatgtcggtaaatctaccactctggggtct
ggaggacggtggccctcttctgacagctccagtaggcggtgccccaggtacttggcacct
gttaccttggccatgtccccctcaaatgccagctttgcattatctgctgccctcataaga
aaaaataatacagagctggaagacaaacatcagagaatcaatgaggctctgaaactgcgg
agcggccaccggacgccttctggagcaggtagcagcatgcagccgcctccaagtctgtgc
ggacgcgccctggttgcgctggttcttgcctgcggcctgtcgcggatctggggagaggag
agaggcttcccgcctgacagggccactccgcttttgcaaaccgcagagataatgacgcca
cccactaagaccttatggcccaagggttccaacgccagtctggcgcggtcgttggcacct
gcggaggtgcctaaaggagacaggacggcaggatctccgccacgcaccatctcccctccc
ccgtgccaaggacccatcgagatcaaggagactttcaaatacatcaacacggttgtgtcc
tgccttgtgttcgtgctggggatcatcgggaactccacacttctgagaattatctacaag
aacaagtgcatgcgaaacggtcccaatatcttgatcgccagcttggctctgggagacctg
ctgcacatcgtcattgacatccctatcaatgtctacaagatatcaccagtgatcttagaa
gatccagctcagataagtgaactaataataggccaggccctcaagagattggataatggc
cacccacctaggctgctggcagaggactggccatttggagctgagatgtgtaagctggtg
cctttcatacagaaagcctctgtgggaatcactgtgctgagtctatgtgctctgagtatt
gacagatatcgagctgttgcttcttggagtagaattaaaggaattggggttccaaaatgg
acagcagtagaaattgttttgatttgggtggtctctgtggttctggctgtccctgaagcc
ataggttttgatataattacgatggactacaaaggaagttatctgcgaatctgcttgctt
catcccgttcagaagacagctttcatgcagcctattctatatgaagatgatgagaatgaa
gatctttatgatgatccacttccacttattgaatag

>gi568815585r:77798203_78018573|GENSCAN_predicted_peptide_5|132_aa
MDDTEETPNPKEIDCSTDWTTLDPSDLSPHRQAKLKETTQGKDENPAQFRAHLAATLRRF
TALDPERPEGRLILNMHFITQSTPDIRKKLQKLESGPQTPQQELINLAFKVYNNRKQPNG
NAFLSYNYLPLL

>gi568815585r:77798203_78018573|GENSCAN_predicted_CDS_5|399_bp
atggatgatactgaagagaccccgaacccaaaggaaatagactgcagcactgattggacg
actttggacccatctgacctctcccctcatcgccaggctaagcttaaagaaactacccaa
ggtaaagacgaaaacccagcccagttcagggcccacttagcagcaacccttagacgcttt
accgccctagacccagaaaggccagaaggccgccttattcttaatatgcattttatcacc
caatccactcctgacattaggaaaaaacttcaaaaattagaatctggccctcaaacccca
caacaggaattaatcaacctcgccttcaaggtgtacaataataggaagcagccaaacggc
aatgcatttctgagttacaattacttgcctctgctgtga

>gi568815585r:77798203_78018573|GENSCAN_predicted_peptide_6|628_aa
MTPHMARFPSETKLPEERSGSNICCSAIFAVLQPPLLIPRQTGSGVDFQQTPTDLQLRVL
TVRRKTNKQKGHPHQNPICTSPSSKTKEIQTTIREYYKHLYANKLENLEEMDKFLDTYTL
LRLNQEEVKSLNRPITGSEIEAIINSLPTKKRPGPNGFTAEFYQRYKEELENKIPRNPTY
KGCEGPLQGELQTTAQRNKRGHKQMEEHSMLMDKNNQYRENVHTAQVIYRVNAIPINLPM
TFFTELEKTTLKFIWNQKRAHIAKSVLSQKNKAGGIMLPDFKVYYKATVTKTAWYWYQNR
DIDQWNRTEPSEIIPYIYNNLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLT
PYTKINSRWIKDLNVRPKTIKTLEEILGNTIQDGGMGKDFMSKTPKAMATKAKVDKWDLI
KLKSFCTAKETTIRVNRQPTEWEKIFATYSSDKGLISRIHNELKQIYKKKTNNPIKNWVK
DMNRHFSEEDIYAANRHMKKCASSLAIREMQIKTTMRYHLTPVTMAIIKKSGNNRCWRGC
GEIGTLLHCWWGCKLVQPLWKTVWPLLKDLELEIPFDPAIPLLGIYPKDYKSCCYKDTCY
KDTYVYCGTIQNIKHLEPTQMSINDRLD

>gi568815585r:77798203_78018573|GENSCAN_predicted_CDS_6|1887_bp
atgacacctcacatggccaggttcccctctgagacgaagcttccagaggaacgatcaggc
agcaacatttgctgttcagcaatattcgctgttctgcagccaccactgctgatacccagg
caaacagggtcgggagtggacttccagcaaactccaacagacctgcagctgagggtcctg
actgttagaaggaagactaacaaacagaaaggacatccacaccaaaaccccatctgtacg
tcaccatcatcaaagaccaaagaaatacaaactaccatcagagaatactataaacacctc
tacgcaaataaactagaaaatctagaagaaatggataaattcctggacacgtacaccctc
ctaagactaaaccaggaagaagttaaatccctgaatagaccaataacaggctctgaaatt
gaggcaataattaatagcctaccaaccaaaaaacgtccaggaccaaatggattcacagcc
gaattctaccagaggtacaaggaggagctggagaataaaatacctaggaatccaacttac
aagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaacgaaataaaaga
ggacacaaacaaatggaagaacattccatgctcatggataagaataatcaatatcgtgaa
aatgtccatactgcccaagtaatttatagagtcaatgccatccccatcaacctaccaatg
actttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagct
cacattgccaagtcagtcctaagccaaaagaacaaagctggaggcattatgctacctgac
ttcaaagtatactacaaggctacagtaaccaaaacagcatggtactggtaccaaaacaga
gatatagaccagtggaacagaacagagccctcagaaataataccatatatctacaacaat
ctgatctttgataaacctgagaaaaacaagcaatggggaaaggattccctatttaataaa
tggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttaca
ccttatacaaaaattaattcaagatggattaaagacttaaatgttagacctaaaaccata
aaaaccctagaagaaatcctaggcaataccattcaggacggaggcatgggcaaggatttc
atgtctaaaacaccaaaagcaatggcaacaaaagccaaagttgacaaatgggatctaatt
aaactaaagagcttctgcacagcaaaagaaactaccatcagagtaaacaggcaacctaca
gaatgggagaaaatttttgcaacctactcatctgacaaagggctaatatccagaatccac
aatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaactgggtgaag
gatatgaacagacacttctcagaagaagacatttatgcagccaacagacacatgaaaaaa
tgtgcctcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctc
acaccagttacaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgt
ggagaaataggaacacttttacattgttggtggggctgtaaactagttcaaccattgtgg
aagacagtgtggccactcctcaaggatctagaactagaaataccatttgatccagccatc
ccattactgggtatatacccaaaggattataaatcatgctgctataaagacacatgctat
aaagacacatatgtttattgtggtactattcagaatatcaaacacttggaaccaacccaa
atgtccatcaatgatagactggattga

>gi568815585r:77798203_78018573|GENSCAN_predicted_peptide_7|100_aa
MGEEVQQEEVPEKRFSMACFRICKEAGIGGHEWGQEFPVNQHQPEDHVLIKRWKEEKLEP
AWEGPYFVLLTTKAAVHTAKKDGLITPESRKRHPLQSRGP

>gi568815585r:77798203_78018573|GENSCAN_predicted_CDS_7|303_bp
atgggggaagaagttcagcaagaagaagtccctgagaaaaggttcagcatggcatgtttc
aggatctgcaaagaggctggtataggtggacatgagtgggggcaggaatttccagtaaac
cagcaccagcctgaagatcacgttctcatcaaaaggtggaaagaagaaaaactcgagcca
gcctgggaaggaccctactttgtgctgctaaccaccaaggctgctgttcatacagcaaaa
aaggatggactcatcacacctgagtcaagaaagcgccaccccctccagagtcgtgggcca
tag

>gi568815585r:77798203_78018573|GENSCAN_predicted_peptide_8|125_aa
MLQGTNPQPRVFIQGGLDPIRINPSVVARNFLPPTASGHLLNPFLEGFHSPFGAFPGQCT
ATPAKAGQGDDECQLDSSPLPRLNDKALPPGMDHVCSKPQWTVSSSVIAATPSKLPRSLR
KLRRT

>gi568815585r:77798203_78018573|GENSCAN_predicted_CDS_8|378_bp
atgctccagggcacaaaccctcagcctcgggtattcatccagggaggtttggatccgatt
cgcataaatcccagtgtggtagcaaggaatttcctgcctcctactgcttcaggacacctg
ctcaacccatttttagaaggctttcacagcccttttggggcattcccaggacagtgtact
gcaacccctgccaaggcaggacagggggacgatgaatgccagctggattccagtccactc
cccagactgaatgataaggctctaccaccgggaatggatcatgtctgttcaaagccacaa
tggacagtgtcctcttctgtcattgcagctacaccatccaaactccccagatccctaagg
aaactcagaagaacatga

>gi568815585r:77798203_78018573|GENSCAN_predicted_peptide_9|55_aa
MIKNIMRWLVFNLTVLRDAQIAGKTAFPAVTVRAPVCDVPVPASKGSYCSTTTYE

>gi568815585r:77798203_78018573|GENSCAN_predicted_CDS_9|168_bp
atgatcaaaaacataatgcgatggctagttttcaacttgactgtgctacgagatgcccag
atagctggcaaaacagcatttccagctgtaactgtgagggccccagtgtgtgatgttccc
gtccctgcgtccaagggttcttattgttcaactaccacttatgagtga