Result of FASTA (ccds) for pF1KB3758
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3758, 594 aa
  1>>>pF1KB3758 594 - 594 aa - 594 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6206+/-0.000916; mu= 2.4718+/- 0.055
 mean_var=284.8390+/-56.247, 0's: 0 Z-trim(115.1): 16  B-trim: 19 in 1/53
 Lambda= 0.075993
 statistics sampled from 15671 (15684) to 15671 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.482), width:  16
 Scan time:  4.600

The best scores are:                                      opt bits E(32554)
CCDS42339.1 HAP1 gene_id:9001|Hs108|chr17          ( 594) 3918 442.9 5.6e-124
CCDS42338.1 HAP1 gene_id:9001|Hs108|chr17          ( 602) 3892 440.0 4.1e-123
CCDS11406.1 HAP1 gene_id:9001|Hs108|chr17          ( 619) 2653 304.2 3.2e-82


>>CCDS42339.1 HAP1 gene_id:9001|Hs108|chr17               (594 aa)
 initn: 3918 init1: 3918 opt: 3918  Z-score: 2339.3  bits: 442.9 E(32554): 5.6e-124
Smith-Waterman score: 3918; 99.3% identity (99.8% similar) in 594 aa overlap (1-594:1-594)

               10        20        30        40        50        60
pF1KB3 MRPRRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGTQF
       :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS42 MRPKRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGSQF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LEELLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LEELLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEIL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 YLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 SQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQFLEAS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS42 SQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQFSEAS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 QQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMETLPGFQETLAEELRTSLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMETLPGFQETLAEELRTSLRR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 MISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQVRGFEAEEGLMLAADIMRGEDFTPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQVRGFEAEEGLMLAADIMRGEDFTPA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 EELVPQEELGAAKKVPAEEGVMEEAELVSEETEGWEEVELELDEATRMNVVTSALEASGL
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEFVPQEELGAAKKVPAEEGVMEEAELVSEETEGWEEVELELDEATRMNVVTSALEASGL
              490       500       510       520       530       540

              550       560       570       580       590    
pF1KB3 GPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGECPHGALPAASRTSCRSSCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGECPHGALPAASRTSCRSSCR
              550       560       570       580       590    

>>CCDS42338.1 HAP1 gene_id:9001|Hs108|chr17               (602 aa)
 initn: 2676 init1: 2676 opt: 3892  Z-score: 2323.8  bits: 440.0 E(32554): 4.1e-123
Smith-Waterman score: 3892; 98.0% identity (98.5% similar) in 602 aa overlap (1-594:1-602)

               10        20        30        40        50        60
pF1KB3 MRPRRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGTQF
       :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS42 MRPKRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGSQF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
              130       140       150       160       170       180

                      190       200       210       220       230  
pF1KB3 LEE--------LLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALL
       :::        :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LEEVCTAFLIQLLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALL
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KB3 GSAKEEILYLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GSAKEEILYLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAH
              250       260       270       280       290       300

            300       310       320       330       340       350  
pF1KB3 PCDAPKLISQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PCDAPKLISQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILEC
              310       320       330       340       350       360

            360       370       380       390       400       410  
pF1KB3 VEQFLEASQQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMETLPGFQETLAE
       :::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VEQFSEASQQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMETLPGFQETLAE
              370       380       390       400       410       420

            420       430       440       450       460       470  
pF1KB3 ELRTSLRRMISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQVRGFEAEEGLMLAADIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ELRTSLRRMISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQVRGFEAEEGLMLAADIM
              430       440       450       460       470       480

            480       490       500       510       520       530  
pF1KB3 RGEDFTPAEELVPQEELGAAKKVPAEEGVMEEAELVSEETEGWEEVELELDEATRMNVVT
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RGEDFTPAEEFVPQEELGAAKKVPAEEGVMEEAELVSEETEGWEEVELELDEATRMNVVT
              490       500       510       520       530       540

            540       550       560       570       580       590  
pF1KB3 SALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGECPHGALPAASRTSCRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGECPHGALPAASRTSCRSS
              550       560       570       580       590       600

         
pF1KB3 CR
       ::
CCDS42 CR
         

>>CCDS11406.1 HAP1 gene_id:9001|Hs108|chr17               (619 aa)
 initn: 3904 init1: 2631 opt: 2653  Z-score: 1589.5  bits: 304.2 E(32554): 3.2e-82
Smith-Waterman score: 3858; 95.3% identity (95.8% similar) in 619 aa overlap (1-594:1-619)

               10        20        30        40        50        60
pF1KB3 MRPRRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGTQF
       :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS11 MRPKRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGSQF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LEELLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LEELLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEIL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 YLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 SQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQFLEAS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS11 SQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQFSEAS
              310       320       330       340       350       360

              370       380       390       400                    
pF1KB3 QQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRM--------------------
       ::::::::::::::::::::::::::::::::::::::::                    
CCDS11 QQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMYGAETEKLQKQLASEKEIQM
              370       380       390       400       410       420

                   410       420       430       440       450     
pF1KB3 -----ETLPGFQETLAEELRTSLRRMISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQ
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLQEEETLPGFQETLAEELRTSLRRMISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQ
              430       440       450       460       470       480

         460       470       480       490       500       510     
pF1KB3 VRGFEAEEGLMLAADIMRGEDFTPAEELVPQEELGAAKKVPAEEGVMEEAELVSEETEGW
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS11 VRGFEAEEGLMLAADIMRGEDFTPAEEFVPQEELGAAKKVPAEEGVMEEAELVSEETEGW
              490       500       510       520       530       540

         520       530       540       550       560       570     
pF1KB3 EEVELELDEATRMNVVTSALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEVELELDEATRMNVVTSALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGE
              550       560       570       580       590       600

         580       590    
pF1KB3 CPHGALPAASRTSCRSSCR
       :::::::::::::::::::
CCDS11 CPHGALPAASRTSCRSSCR
              610         




594 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:40:07 2016 done: Fri Nov  4 02:40:08 2016
 Total Scan time:  4.600 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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