Result of FASTA (omim) for pF1KB3711
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3711, 75 aa
  1>>>pF1KB3711 75 - 75 aa - 75 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8386+/-0.000266; mu= 9.1569+/- 0.017
 mean_var=46.5034+/- 9.338, 0's: 0 Z-trim(119.2): 76  B-trim: 422 in 1/55
 Lambda= 0.188075
 statistics sampled from 32785 (32861) to 32785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.385), width:  16
 Scan time:  3.740

The best scores are:                                      opt bits E(85289)
NP_004476 (OMIM: 604388) guanine nucleotide-bindin (  75)  489 139.2   6e-34
NP_001092191 (OMIM: 604388) guanine nucleotide-bin (  75)  489 139.2   6e-34
XP_011542469 (OMIM: 604388) PREDICTED: guanine nuc (  75)  489 139.2   6e-34
XP_006711824 (OMIM: 604388) PREDICTED: guanine nuc (  75)  489 139.2   6e-34
NP_001092192 (OMIM: 604388) guanine nucleotide-bin (  75)  489 139.2   6e-34
NP_001230703 (OMIM: 606981) guanine nucleotide-bin (  71)  381 109.9 3.8e-25
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc (  71)  381 109.9 3.8e-25
NP_001230702 (OMIM: 606981) guanine nucleotide-bin (  71)  381 109.9 3.8e-25
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc (  71)  381 109.9 3.8e-25
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc (  71)  381 109.9 3.8e-25
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc (  71)  381 109.9 3.8e-25
NP_444292 (OMIM: 606981) guanine nucleotide-bindin (  71)  381 109.9 3.8e-25
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc (  75)  341 99.0 7.4e-22
NP_036334 (OMIM: 608941) guanine nucleotide-bindin (  75)  341 99.0 7.4e-22
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc (  68)  283 83.3 3.7e-17
NP_443079 (OMIM: 604430) guanine nucleotide-bindin (  68)  283 83.3 3.7e-17
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc (  72)  280 82.5 6.8e-17
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc (  72)  280 82.5 6.8e-17
NP_061329 (OMIM: 615405) guanine nucleotide-bindin (  72)  280 82.5 6.8e-17
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc (  72)  280 82.5 6.8e-17
NP_005265 (OMIM: 600874) guanine nucleotide-bindin (  68)  211 63.8 2.8e-11
NP_001185593 (OMIM: 604389) guanine nucleotide-bin (  68)  204 61.9   1e-10
NP_001017998 (OMIM: 604389) guanine nucleotide-bin (  68)  204 61.9   1e-10
NP_068774 (OMIM: 189970) guanine nucleotide-bindin (  74)  142 45.0 1.3e-05
NP_001316355 (OMIM: 189970) guanine nucleotide-bin (  74)  142 45.0 1.3e-05
NP_001185685 (OMIM: 139391) guanine nucleotide-bin (  69)  138 43.9 2.6e-05
NP_001185683 (OMIM: 139391) guanine nucleotide-bin (  69)  138 43.9 2.6e-05
NP_113686 (OMIM: 139391) guanine nucleotide-bindin (  69)  138 43.9 2.6e-05
NP_001185684 (OMIM: 139391) guanine nucleotide-bin (  69)  138 43.9 2.6e-05
NP_004117 (OMIM: 604390) guanine nucleotide-bindin (  73)  136 43.4   4e-05
NP_057625 (OMIM: 607298) guanine nucleotide-bindin (  67)  116 38.0  0.0016


>>NP_004476 (OMIM: 604388) guanine nucleotide-binding pr  (75 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 730.5  bits: 139.2 E(85289): 6e-34
Smith-Waterman score: 489; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

               70     
pF1KB3 SENPFREKKFFCTIL
       :::::::::::::::
NP_004 SENPFREKKFFCTIL
               70     

>>NP_001092191 (OMIM: 604388) guanine nucleotide-binding  (75 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 730.5  bits: 139.2 E(85289): 6e-34
Smith-Waterman score: 489; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

               70     
pF1KB3 SENPFREKKFFCTIL
       :::::::::::::::
NP_001 SENPFREKKFFCTIL
               70     

>>XP_011542469 (OMIM: 604388) PREDICTED: guanine nucleot  (75 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 730.5  bits: 139.2 E(85289): 6e-34
Smith-Waterman score: 489; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

               70     
pF1KB3 SENPFREKKFFCTIL
       :::::::::::::::
XP_011 SENPFREKKFFCTIL
               70     

>>XP_006711824 (OMIM: 604388) PREDICTED: guanine nucleot  (75 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 730.5  bits: 139.2 E(85289): 6e-34
Smith-Waterman score: 489; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

               70     
pF1KB3 SENPFREKKFFCTIL
       :::::::::::::::
XP_006 SENPFREKKFFCTIL
               70     

>>NP_001092192 (OMIM: 604388) guanine nucleotide-binding  (75 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 730.5  bits: 139.2 E(85289): 6e-34
Smith-Waterman score: 489; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

               70     
pF1KB3 SENPFREKKFFCTIL
       :::::::::::::::
NP_001 SENPFREKKFFCTIL
               70     

>>NP_001230703 (OMIM: 606981) guanine nucleotide-binding  (71 aa)
 initn: 381 init1: 381 opt: 381  Z-score: 572.5  bits: 109.9 E(85289): 3.8e-25
Smith-Waterman score: 381; 77.5% identity (95.8% similar) in 71 aa overlap (5-75:1-71)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
           :..:.:.::.:::: :::::::: .::.:::.:::::.::::::..::::. ::::
NP_001     MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
                   10        20        30        40        50      

               70     
pF1KB3 SENPFREKKFFCTIL
       ::::::::::::.::
NP_001 SENPFREKKFFCAIL
         60        70 

>>XP_016876866 (OMIM: 606981) PREDICTED: guanine nucleot  (71 aa)
 initn: 381 init1: 381 opt: 381  Z-score: 572.5  bits: 109.9 E(85289): 3.8e-25
Smith-Waterman score: 381; 77.5% identity (95.8% similar) in 71 aa overlap (5-75:1-71)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
           :..:.:.::.:::: :::::::: .::.:::.:::::.::::::..::::. ::::
XP_016     MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
                   10        20        30        40        50      

               70     
pF1KB3 SENPFREKKFFCTIL
       ::::::::::::.::
XP_016 SENPFREKKFFCAIL
         60        70 

>>NP_001230702 (OMIM: 606981) guanine nucleotide-binding  (71 aa)
 initn: 381 init1: 381 opt: 381  Z-score: 572.5  bits: 109.9 E(85289): 3.8e-25
Smith-Waterman score: 381; 77.5% identity (95.8% similar) in 71 aa overlap (5-75:1-71)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
           :..:.:.::.:::: :::::::: .::.:::.:::::.::::::..::::. ::::
NP_001     MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
                   10        20        30        40        50      

               70     
pF1KB3 SENPFREKKFFCTIL
       ::::::::::::.::
NP_001 SENPFREKKFFCAIL
         60        70 

>>XP_016876865 (OMIM: 606981) PREDICTED: guanine nucleot  (71 aa)
 initn: 381 init1: 381 opt: 381  Z-score: 572.5  bits: 109.9 E(85289): 3.8e-25
Smith-Waterman score: 381; 77.5% identity (95.8% similar) in 71 aa overlap (5-75:1-71)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
           :..:.:.::.:::: :::::::: .::.:::.:::::.::::::..::::. ::::
XP_016     MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
                   10        20        30        40        50      

               70     
pF1KB3 SENPFREKKFFCTIL
       ::::::::::::.::
XP_016 SENPFREKKFFCAIL
         60        70 

>>XP_011535148 (OMIM: 606981) PREDICTED: guanine nucleot  (71 aa)
 initn: 381 init1: 381 opt: 381  Z-score: 572.5  bits: 109.9 E(85289): 3.8e-25
Smith-Waterman score: 381; 77.5% identity (95.8% similar) in 71 aa overlap (5-75:1-71)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
           :..:.:.::.:::: :::::::: .::.:::.:::::.::::::..::::. ::::
XP_011     MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
                   10        20        30        40        50      

               70     
pF1KB3 SENPFREKKFFCTIL
       ::::::::::::.::
XP_011 SENPFREKKFFCAIL
         60        70 




75 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:38:07 2016 done: Fri Nov  4 02:38:08 2016
 Total Scan time:  3.740 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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