GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:38:36

Sequence gi568815597r:235452112_235683838 : 231727 bp : 44.39% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.12 Intr -   1035    979   57  0  0   24  111    70 0.706   1.98
 1.11 Intr -   2198   2045  154  1  1   36   91   112 0.691   6.37
 1.10 Intr -   3573   3448  126  2  0  104  106    44 0.935   7.59
 1.09 Intr -   6675   6492  184  1  1   72   78   130 0.790   9.25
 1.08 Intr -  13603  13525   79  1  1   97  110   -16 0.590   0.62
 1.07 Intr -  18849  18739  111  0  0   48   98    53 0.649   2.88
 1.06 Intr -  28038  27943   96  0  0   64   77   131 0.895   9.81
 1.05 Intr -  32404  32211  194  2  2   47   69   251 0.991  18.31
 1.04 Intr -  37157  37057  101  1  2   40  111    55 0.861   2.75
 1.03 Intr -  42717  42570  148  1  1  112   90    57 0.897   7.59
 1.02 Intr -  51750  51577  174  1  0   73   18    87 0.459   0.11
 1.01 Init -  52141  52030  112  1  1   26   94   265 0.986  19.28
 1.00 Prom -  66016  65977   40                              -5.46

 2.00 Prom +  72415  72454   40                              -3.96
 2.01 Init +  79311  79331   21  2  0   99   50    17 0.525  -2.27
 2.02 Term +  81825  81893   69  2  0  119   39   111 0.919   7.24
 2.03 PlyA +  82267  82272    6                               1.05

 3.06 PlyA -  82279  82274    6                               1.05
 3.05 Term -  86706  86516  191  1  2   41   52   137 0.411   3.01
 3.04 Intr -  92339  92308   32  1  2  116   74    16 0.621   0.77
 3.03 Intr -  98149  97973  177  0  0   58   75   171 0.880  11.83
 3.02 Intr - 100126 100020  107  1  2  144  -57   115 0.360   1.61
 3.01 Init - 100804 100802    3  1  0   71  101     0 0.249  -0.40
 3.00 Prom - 105044 105005   40                              -1.96

 4.00 Prom + 111968 112007   40                              -1.86
 4.01 Init + 114572 114625   54  1  0   84   59    75 0.328   5.48
 4.02 Intr + 123121 123189   69  0  0   62   97    32 0.065   0.88
 4.03 Intr + 139495 139706  212  0  2   47   74   133 0.390   5.51
 4.04 Intr + 141664 141712   49  1  1   66   89    52 0.336   1.78
 4.05 Term + 151923 152027  105  2  0  116   42    63 0.423   2.91
 4.06 PlyA + 152623 152628    6                               1.05

 5.04 PlyA - 153827 153822    6                               1.05
 5.03 Term - 163480 163313  168  1  0   23   44   180 0.583   4.98
 5.02 Intr - 164161 163932  230  2  2   88   55   185 0.790  12.79
 5.01 Init - 165604 165556   49  1  1   86   58    30 0.353  -1.08
 5.00 Prom - 171411 171372   40                              -3.16

 6.00 Prom + 171616 171655   40                              -7.66
 6.01 Init + 176455 176498   44  0  2   62   75    49 0.229   0.89
 6.02 Intr + 181697 181846  150  2  0   85   45   135 0.825   8.18
 6.03 Intr + 184089 184288  200  0  2   66   77    98 0.872   5.49
 6.04 Term + 185818 185972  155  2  2   73   46   140 0.953   6.38
 6.05 PlyA + 186846 186851    6                               1.05

 7.03 PlyA - 189771 189766    6                               1.05
 7.02 Term - 191611 191490  122  2  2   93   46   117 0.894   6.64
 7.01 Init - 194506 194419   88  1  1   80   92    61 0.346   6.51
 7.00 Prom - 199348 199309   40                              -4.96

 8.05 PlyA - 199752 199747    6                               1.05
 8.04 Term - 201903 201815   89  1  2   38   44    98 0.408  -1.78
 8.03 Intr - 205209 205067  143  2  2   59   69    83 0.541   3.50
 8.02 Intr - 211944 211873   72  2  0  108  110    29 0.947   5.62
 8.01 Init - 212568 212354  215  0  2   44  116    47 0.948   1.32

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 174601 174484  118  0  1   78   42   112 0.800   3.61
S.002 Term + 221224 221249   26  2  2   99   39    77 0.924   2.29


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:235452112_235683838|GENSCAN_predicted_peptide_1|512_aa
MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPAGLVSDVRRRPFARERNLVCPSAA
SAFCFGSSGSEVVFFPPKLLVFLGQDWGFSAVDNVYQLALFPQWKSTHYDVVVGVLSARN
NHELRNVIRSTWMRHLLQHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNPVL
NQEIEAFSLSEDTSSGLPEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLYQA
EQEEALFIARFSPPSCGVQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHKVT
VNDGGGVLRVITAGEGALPHEFLEGVEGVAGGFIYTIQEGDALLHNLHSRPQRLIDHIRN
LHEEDALLKEESSIYDDIVFVDVVDTYRNVPAKLLNFYRWTVETTSFNLLLKTDDDCYID
LEAVFNRIVQKNLDGPNFWWGKLNWAVDRTGKWQELEYPSPAYPAFACGSGYVISKDIVK
WLASNSGRLKTYQGEDVSMGIWMAAIGPKRYQ

>gi568815597r:235452112_235683838|GENSCAN_predicted_CDS_1|1536_bp
atgcgaaactggctggtgctgctgtgcccgtgtgtgctcggggccgcgctgcacctctgg
ctgcggctgcgctccccgccgcccgcctgcgcctccggggccggccctgcaggcctggtt
agtgatgtccgacgccgcccgttcgcccgggagcggaacctcgtgtgcccttcagccgcc
agcgctttctgctttgggagctctggctctgaagttgttttcttcccccccaagttgttg
gtctttctcggtcaagactggggttttagtgccgtggataatgtgtatcagttggcctta
tttcctcagtggaaatctactcactatgatgtggtagttggcgtgttgtcagctcgcaat
aaccatgaacttcgaaacgtgataagaagcacctggatgagacatttgctacagcatccc
acattaagtcaacgtgtgcttgtgaagttcataataggtgctcatggctgtgaagtgcct
gtggaagacagggaggatccttattcctgtaaactactcaacatcacaaatccagttttg
aatcaggaaattgaagcgttcagtctgtccgaagacacttcatcggggctgcctgaggat
cgagttgtcagcgtgagtttccgagttctctaccccatcgttattaccagtcttggagtg
ttctacgatgccaatgatgtgggtttccagaggaacatcactgtcaaactttatcaggca
gaacaagaggaggccctcttcattgctcgcttcagtcctccaagctgtggtgtgcaggtg
aacaagctgtggtacaagcccgtggaacaattcatcttaccagagagctttgaaggtaca
atcgtgtgggagagccaagacctccacggccttgtgtcaagaaatctccacaaagtgaca
gtgaatgatggagggggagttctcagagtcattacagctggggagggtgcattgcctcat
gaattcttggaaggtgtggagggagttgcaggtggttttatatatactattcaggaaggt
gatgctctcttacacaaccttcattctcgccctcaaagacttattgatcatataaggaat
ctccatgaggaagatgccttactgaaggaggaaagcagcatctatgatgatattgttttt
gtggatgttgtcgacacttatcgtaatgttcctgcaaaattattgaacttctatagatgg
actgtggaaacaacgagcttcaatttgttgctgaagacagatgatgactgttacatagac
ctcgaagctgtatttaataggattgtccaaaagaatctggatgggcctaatttttggtgg
ggaaaactgaattgggcagttgaccgaaccggaaagtggcaggagttggagtacccgagc
cccgcttaccctgcctttgcatgtgggtcaggatatgtgatctccaaggacatcgtcaag
tggctggcaagcaactcggggaggttaaagacctatcagggtgaagatgtaagcatgggc
atctggatggctgccataggacctaaaagataccag

>gi568815597r:235452112_235683838|GENSCAN_predicted_peptide_2|29_aa
MGLGPGPPTQCEDEDEDEDFYDDPLSLNE

>gi568815597r:235452112_235683838|GENSCAN_predicted_CDS_2|90_bp
atggggctggggcctggccctcctactcaatgtgaagatgaagatgaggatgaagacttt
tatgatgatccactttcacttaatgaatag

>gi568815597r:235452112_235683838|GENSCAN_predicted_peptide_3|169_aa
MVSQAAADLLAYCEAHVREDPLIIPVPASENPFREKKRKPYSGSLRKVIHGCPKERLDID
ELALGLSKINLKVLPKPNSYDPDERGEYTVGAELFVPQTHTGPRPGASLIHNLSEEQDIR
KIGGLFKTLPLTSSSHFISSLTTYRYAFLTGFYSKDLIIEPANTSYTNA

>gi568815597r:235452112_235683838|GENSCAN_predicted_CDS_3|510_bp
atggtctcccaggcagctgcggacctcctggcctactgtgaagctcacgtgcgggaagat
cctctcatcattccagtgcctgcatcagaaaacccctttcgcgagaagaagaggaagccg
tattctggtagtttaaggaaggtgattcatggatgccccaaggaaaggctagacatcgat
gaattagctcttggattgtctaagatcaacctgaaggtcctacctaaaccaaactcatat
gatcccgatgaaagaggagaatacacagtgggagcagagctctttgtgccacagacccat
actggtccgcggcctggggcgtccctcatccataacctcagtgaagaacaagacatccga
aaaataggagggctattcaagactctacccctcacttcctcctcccattttatcagcagc
ctcacaacttacaggtatgccttcctcacaggcttttactccaaagacctcattattgaa
cctgcaaacacatcatacaccaatgcctga

>gi568815597r:235452112_235683838|GENSCAN_predicted_peptide_4|162_aa
MAVLSNENGDATSAEDLGWQKAIRIQYAPPLPMGSHPHKPITFMRLHIPPGPKKKNGSRN
REELQQISTRTLATGNTDWALGFPEDEARGKRDHLLRGGTWGHVLTQLFLPSGFVVSLAS
GVKPQTFVVEIKTLNQQEKMLEVYSWPEALTSALTDCDVNSF

>gi568815597r:235452112_235683838|GENSCAN_predicted_CDS_4|489_bp
atggcggtgctatctaatgagaacggggatgctaccagtgctgaagatctgggttggcag
aaagcaatacgcattcagtatgctcctccacttcccatggggtcacatccgcataaaccc
atcacattcatgcgtctgcacatcccacctggacccaagaagaaaaatggaagtaggaac
agagaggagctgcaacaaatctccacacgcacactggctaccggcaacactgactgggct
ctcggctttccagaagatgaggcaagggggaaaagggaccatttgcttaggggtggcacc
tggggccacgtgctcacacagctctttcttcccagtgggtttgtggtctcgctggcttca
ggagtgaagccgcagaccttcgtggtagaaatcaaaactcttaatcaacaggagaagatg
ttagaagtttactcgtggcctgaggctcttacatcagcccttactgactgtgatgttaat
tctttctga

>gi568815597r:235452112_235683838|GENSCAN_predicted_peptide_5|148_aa
MGFHYVGQAGLELLASDLIRLREHINHSNIQEHSSNQHKNSVGREVAAGQDAKGQTHIAA
GGRGLKKTVLNGPPSAKQDDKVMWELLMEDGHQRVEIKSPRNELGEHIGLEDSNRQSYDV
EQQLPSVKGLLEGTTMVPMREQREMTVT

>gi568815597r:235452112_235683838|GENSCAN_predicted_CDS_5|447_bp
atggggtttcactatgttggtcaggctggtcttgaactcctggcctcagacctcattcgt
ctcagggaacatatcaaccacagcaatattcaagaacattcctccaaccagcacaaaaat
tcagttggcagagaagtggctgctggccaggatgccaaaggccagacccacatagcagca
ggcggaagggggttgaagaagacagtgctgaatggtcctcctagcgctaagcaggatgac
aaagtcatgtgggaactcctcatggaagacggccaccagagggttgaaatcaaaagcccc
aggaatgagctaggagagcacattggactagaggattccaatcgccagagctatgacgtg
gagcagcagcttccttctgtaaaaggccttcttgaaggcaccacgatggtgcccatgagg
gagcagagggagatgacagtcacatag

>gi568815597r:235452112_235683838|GENSCAN_predicted_peptide_6|182_aa
MVSYGSPSGQIPGPVSHLVVGEEAAGWEKSNQDKAIKSKKNVHMAQLMDSLYKQIGKDKK
TRIQIQSYPHCLKENEDDYTEVQRGILLFTSKAGSESLLQEQVLDAKAFDLFEEGSLGVS
EKGNPKGTRSCVRHRLEETTEKEPRPMACKATSLYLTKKSFPDPGSCLRIWPASSSNAPG
LR

>gi568815597r:235452112_235683838|GENSCAN_predicted_CDS_6|549_bp
atggtgtcctacgggtcacccagtggacagatacctggtcctgtgagtcacctggtggtg
ggtgaagaagcagctggatgggagaagtccaaccaggataaggccataaaaagcaagaaa
aatgtacacatggcccagctcatggacagtctttataagcaaatagggaaggataaaaag
acgagaatccaaatccagagttatccgcactgcctcaaggagaatgaggacgattacaca
gaagtgcaaagaggaattttgctttttacttccaaagcgggttcagaaagccttcttcag
gaacaagttttagacgctaaagcctttgatttatttgaggaaggctctttgggggtctca
gaaaaggggaaccccaaaggcaccaggtcctgcgtccggcacagacttgaggagaccacc
gaaaaggagcccaggccaatggcctgcaaagccacttccctctacttgaccaagaagagc
ttcccggaccctggctcctgcctgcgcatctggccagcttcatcttccaatgctcctggt
ctccgataa

>gi568815597r:235452112_235683838|GENSCAN_predicted_peptide_7|69_aa
MEELFVSMAVRFVGHQRPSLRGSDRARSPVLLSSTAPRHIPFHYWVLWKDFSNTDILLDA
IDVFIEDCM

>gi568815597r:235452112_235683838|GENSCAN_predicted_CDS_7|210_bp
atggaggaactgttcgtctccatggccgtgaggtttgtgggtcaccaaaggcccagtctc
cgaggatcggatagggctaggagcccagttttactgtccagtactgctccccgccacatt
ccttttcattactgggtgctatggaaggacttttccaatacagacatactgctggatgcg
atcgatgtgttcatcgaagactgcatgtga

>gi568815597r:235452112_235683838|GENSCAN_predicted_peptide_8|172_aa
MWALRQPHSGNPPDDLGVLAGGGSDLRLWTVNGDLVGHVHCREIICSVAFSNQPEGVSIN
VIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIISYYNQLFGIYFVLDNLSLVNIYEFR
KQKSSELNLRNRTVFVTNKLQLRDPRNPMNTKQHKHKENHIKAHHNHTVENQ

>gi568815597r:235452112_235683838|GENSCAN_predicted_CDS_8|519_bp
atgtgggctctgagacagccacattctggtaacccgccggatgatttgggtgttttagct
ggcggaggcagtgacctcagactctggacggtgaacggggatctcgttggacatgtccac
tgcagggagatcatctgttccgtggctttctccaaccagcctgagggagtatctatcaat
gtaatcgctgggggattagaaaatggaattgtaaggttatggagcacatgggacttaaag
cctgtgagagaaattacatttcccaaatcaaataagcccatcatcagttattacaaccaa
ttattcggtatatactttgtgttggacaatctttctcttgtgaacatctatgagtttcga
aaacaaaaatcatcagagctgaatctgagaaatagaactgttttcgtcacaaacaagtta
cagttacgagatccaagaaatccaatgaacaccaagcagcataaacacaaagaaaaccac
atcaaggcacatcataatcacactgttgaaaaccagtga