Result of FASTA (ccds) for pF1KB3552
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3552, 373 aa
  1>>>pF1KB3552 373 - 373 aa - 373 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4729+/-0.000799; mu= 1.1710+/- 0.048
 mean_var=255.1025+/-51.022, 0's: 0 Z-trim(117.5): 5  B-trim: 14 in 1/52
 Lambda= 0.080300
 statistics sampled from 18266 (18271) to 18266 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.561), width:  16
 Scan time:  3.300

The best scores are:                                      opt bits E(32554)
CCDS7702.1 RASSF7 gene_id:8045|Hs108|chr11         ( 373) 2513 303.2 2.3e-82
CCDS44505.1 RASSF7 gene_id:8045|Hs108|chr11        ( 320) 2121 257.8 9.8e-69
CCDS44506.1 RASSF7 gene_id:8045|Hs108|chr11        ( 337) 2114 257.0 1.8e-68
CCDS8705.1 RASSF8 gene_id:11228|Hs108|chr12        ( 392)  483 68.1 1.5e-11
CCDS53765.1 RASSF8 gene_id:11228|Hs108|chr12       ( 419)  483 68.1 1.6e-11


>>CCDS7702.1 RASSF7 gene_id:8045|Hs108|chr11              (373 aa)
 initn: 2513 init1: 2513 opt: 2513  Z-score: 1592.0  bits: 303.2 E(32554): 2.3e-82
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB3 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 AALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAELLEVAAAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAELLEVAAAPA
              310       320       330       340       350       360

              370   
pF1KB3 PEWCPLAAQPQAL
       :::::::::::::
CCDS77 PEWCPLAAQPQAL
              370   

>>CCDS44505.1 RASSF7 gene_id:8045|Hs108|chr11             (320 aa)
 initn: 2197 init1: 2121 opt: 2121  Z-score: 1347.5  bits: 257.8 E(32554): 9.8e-69
Smith-Waterman score: 2121; 99.7% identity (99.7% similar) in 319 aa overlap (1-319:1-319)

               10        20        30        40        50        60
pF1KB3 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 AALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAELLEVAAAPA
       ::::::::::::::::: :                                         
CCDS44 AALPPPPRPDRGPPGTQWPP                                        
              310       320                                        

>>CCDS44506.1 RASSF7 gene_id:8045|Hs108|chr11             (337 aa)
 initn: 2114 init1: 2114 opt: 2114  Z-score: 1342.8  bits: 257.0 E(32554): 1.8e-68
Smith-Waterman score: 2114; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)

               10        20        30        40        50        60
pF1KB3 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPPPERCLIRASLPVKPRAAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCEPRKTLTPEPAPSLSRPGPAAPVTPTPGCCTDLRGLELRVQRNAEELGHEAFWEQELR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQLAAEAPGPPSPMASATER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQFIQQTG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 AALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAELLEVAAAPA
       :::::::::::::::::                                           
CCDS44 AALPPPPRPDRGPPGTQVGVVLGGGWEVRTWPSPTPS                       
              310       320       330                              

>>CCDS8705.1 RASSF8 gene_id:11228|Hs108|chr12             (392 aa)
 initn: 760 init1: 434 opt: 483  Z-score: 320.8  bits: 68.1 E(32554): 1.5e-11
Smith-Waterman score: 648; 37.9% identity (56.6% similar) in 369 aa overlap (8-307:1-367)

               10        20        30        40        50        60
pF1KB3 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
              :::::::::.::.::::.: :::::::::::::::.:::..:... :. ::.:
CCDS87        MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHL
                      10        20        30        40        50   

               70        80        90       100        110         
pF1KB3 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPP-PERCLIRASLPVKPRAA
        :.: :. .    ::.:::::..::::::::. ::.:::    ::: : : :::  : : 
CCDS87 APHENPIISLNKWGQYASDVQLILRRTGPSLSERPTSDSVARIPERTLYRQSLP--PLAK
            60        70        80        90       100         110 

     120       130         140       150                           
pF1KB3 LGCEPRKTLTP-EPA-PSLSRPGPAAPVTPTPG--------------CCT---DLRGL--
       :  .  :..   ::   ::.  : :  .    :              : :   .:. :  
CCDS87 LRPQIDKSIKRREPKRKSLTFTGGAKGLMDIFGKGKETEFKQKVLNNCKTTADELKKLIR
             120       130       140       150       160       170 

                                            160       170       180
pF1KB3 --------------------------------------ELRVQRNAEELGHEAFWEQELR
                                             : ...::  :. .: :::.::.
CCDS87 LQTEKLQSIEKQLESNEIEIRFWEQKYNSNLEEEIVRLEQKIKRNDVEIEEEEFWENELQ
             180       190       200       210       220       230 

              190       200       210       220             230    
pF1KB3 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQL------AAEAPGPPSPM
        ::  :.. . .:: .    .:   .:.   :: :..:. :.       . ::      .
CCDS87 IEQENEKQLKDQLQEIRQKITECENKLKDYLAQIRTMESGLEAEKLQREVQEAQVNEEEV
             240       250       260       270       280       290 

          240       250       260       270       280       290    
pF1KB3 ASATERLHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQ
        .   ... .. .: .:: ......  : :.:  : . :: . ::::.:..:::: ::::
CCDS87 KGKIGKVKGEIDIQGQQSLRLENGIKAVERSLGQATKRLQDKEQELEQLTKELRQVNLQQ
             300       310       320       330       340       350 

          300          310       320       330       340       350 
pF1KB3 FIQQTGA---ALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAE
       ::::::.   .::  :                                            
CCDS87 FIQQTGTKVTVLPAEPIEIEASHADIERGIIILSDKQECKD                   
             360       370       380       390                     

>>CCDS53765.1 RASSF8 gene_id:11228|Hs108|chr12            (419 aa)
 initn: 760 init1: 434 opt: 483  Z-score: 320.4  bits: 68.1 E(32554): 1.6e-11
Smith-Waterman score: 648; 37.9% identity (56.6% similar) in 369 aa overlap (8-307:1-367)

               10        20        30        40        50        60
pF1KB3 MLLGLAAMELKVWVDGIQRVVCGVSEQTTCQEVVIALAQAIGQTGRFVLVQRLREKERQL
              :::::::::.::.::::.: :::::::::::::::.:::..:... :. ::.:
CCDS53        MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHL
                      10        20        30        40        50   

               70        80        90       100        110         
pF1KB3 LPQECPVGAQATCGQFASDVQFVLRRTGPSLAGRPSSDSCPP-PERCLIRASLPVKPRAA
        :.: :. .    ::.:::::..::::::::. ::.:::    ::: : : :::  : : 
CCDS53 APHENPIISLNKWGQYASDVQLILRRTGPSLSERPTSDSVARIPERTLYRQSLP--PLAK
            60        70        80        90       100         110 

     120       130         140       150                           
pF1KB3 LGCEPRKTLTP-EPA-PSLSRPGPAAPVTPTPG--------------CCT---DLRGL--
       :  .  :..   ::   ::.  : :  .    :              : :   .:. :  
CCDS53 LRPQIDKSIKRREPKRKSLTFTGGAKGLMDIFGKGKETEFKQKVLNNCKTTADELKKLIR
             120       130       140       150       160       170 

                                            160       170       180
pF1KB3 --------------------------------------ELRVQRNAEELGHEAFWEQELR
                                             : ...::  :. .: :::.::.
CCDS53 LQTEKLQSIEKQLESNEIEIRFWEQKYNSNLEEEIVRLEQKIKRNDVEIEEEEFWENELQ
             180       190       200       210       220       230 

              190       200       210       220             230    
pF1KB3 REQAREREGQARLQALSAATAEHAARLQALDAQARALEAELQL------AAEAPGPPSPM
        ::  :.. . .:: .    .:   .:.   :: :..:. :.       . ::      .
CCDS53 IEQENEKQLKDQLQEIRQKITECENKLKDYLAQIRTMESGLEAEKLQREVQEAQVNEEEV
             240       250       260       270       280       290 

          240       250       260       270       280       290    
pF1KB3 ASATERLHQDLAVQERQSAEVQGSLALVSRALEAAERALQAQAQELEELNRELRQCNLQQ
        .   ... .. .: .:: ......  : :.:  : . :: . ::::.:..:::: ::::
CCDS53 KGKIGKVKGEIDIQGQQSLRLENGIKAVERSLGQATKRLQDKEQELEQLTKELRQVNLQQ
             300       310       320       330       340       350 

          300          310       320       330       340       350 
pF1KB3 FIQQTGA---ALPPPPRPDRGPPGTQGPLPPAREESLLGAPSESHAGAQPRPRGGPHDAE
       ::::::.   .::  :                                            
CCDS53 FIQQTGTKVTVLPAEPIEIEASHADIEREAPFQSGSLKRPGSSRQLPSNLRILQNPISSG
             360       370       380       390       400       410 




373 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:35:49 2016 done: Fri Nov  4 02:35:49 2016
 Total Scan time:  3.300 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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