GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:35:38

Sequence gi568815578r:1272115_1492998 : 220884 bp : 45.76% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   9490   9703  214  1  1   90   47   106 0.358   3.40
 1.02 PlyA +  12042  12047    6                               1.05

 2.04 PlyA -  12252  12247    6                               1.05
 2.03 Term -  12510  12470   41  1  2  114   47    27 0.431  -1.45
 2.02 Intr -  14293  14149  145  1  1  111   59   140 0.851  13.26
 2.01 Init -  15651  15640   12  0  0   64   81     8 0.141  -2.05
 2.00 Prom -  16879  16840   40                              -2.96

 3.00 Prom +  17386  17425   40                              -7.46
 3.01 Init +  23465  23597  133  1  1   94   62   110 0.485   8.89
 3.02 Intr +  24211  24307   97  2  1  110  109    23 0.897   5.67
 3.03 Intr +  24932  25138  207  2  0   39   86   260 0.667  19.09
 3.04 Intr +  28448  28597  150  2  0  103  105   278 0.998  30.28
 3.05 Term +  32764  33940 1177  1  1   79   55  1955 0.993 182.57
 3.06 PlyA +  35932  35937    6                              -3.44

 4.12 PlyA -  35967  35962    6                              -3.84
 4.11 Term -  36465  36165  301  2  1  114   42   122 0.904   4.89
 4.10 Intr -  38777  38686   92  2  2  102   78   176 0.966  16.79
 4.09 Intr -  40394  40223  172  1  1   75  102   322 0.999  32.25
 4.08 Intr -  40648  40473  176  1  2  114  109   224 0.998  25.84
 4.07 Intr -  41384  41226  159  2  0  110   91   167 0.951  19.38
 4.06 Intr -  46304  46204  101  0  2   96   31    48 0.778  -0.27
 4.05 Intr -  46847  46798   50  1  2   60   81    29 0.103  -2.28
 4.04 Intr -  47545  47476   70  2  1  121  109    26 0.130   6.24
 4.03 Intr -  48277  48249   29  0  2   72  111     4 0.020  -1.14
 4.02 Intr -  57072  56971  102  2  0   35  115    86 0.205   5.29
 4.01 Init -  91608  91526   83  0  2   65   70    83 0.300   4.64
 4.00 Prom -  95473  95434   40                              -4.86

 5.08 PlyA -  96893  96888    6                               1.05
 5.07 Term - 100126  99998  129  1  0  114   48   134 0.959  10.18
 5.06 Intr - 103489 103377  113  2  2   97   85    32 0.133   3.90
 5.05 Intr - 120767 120720   48  0  0  102  117    60 0.002   8.95
 5.04 Intr - 120987 120848  140  2  2   30  113    66 0.002   3.41
 5.03 Intr - 121203 121012  192  2  0   89   41    75 0.001   1.51
 5.02 Intr - 121612 121441  172  2  1   53   77    84 0.002   2.80
 5.01 Init - 149946 149871   76  0  1   45   82   168 0.722  11.15
 5.00 Prom - 161882 161843   40                              -2.96

 6.11 PlyA - 167048 167043    6                               1.05
 6.10 Term - 171797 171635  163  1  1   92   41   372 0.836  30.31
 6.09 Intr - 173703 173552  152  0  2   82   82    73 0.946   5.06
 6.08 Intr - 174010 173881  130  0  1   78   95    67 0.951   7.10
 6.07 Intr - 180516 180379  138  2  0  122  110   202 0.998  25.38
 6.06 Intr - 181026 180917  110  0  2  102   96    54 0.998   6.68
 6.05 Intr - 182191 182099   93  1  0   69   76    68 0.935   3.86
 6.04 Intr - 183018 182853  166  2  1   50   70   183 0.965  12.66
 6.03 Intr - 186160 186086   75  0  0  103  105    89 0.996  10.73
 6.02 Intr - 192312 192215   98  0  2   77  110    66 0.998   6.51
 6.01 Init - 194710 194606  105  1  0  106   74   180 0.962  18.63
 6.00 Prom - 198846 198807   40                              -7.46

 7.06 PlyA - 201785 201780    6                               1.05
 7.05 Term - 204222 204053  170  1  2  102   55   104 0.862   6.54
 7.04 Intr - 205289 205224   66  0  0   83   99    62 0.972   5.68
 7.03 Intr - 206493 206152  342  1  0   47  100   273 0.969  19.80
 7.02 Intr - 207951 207586  366  1  0   97   86   229 0.956  18.72
 7.01 Init - 219233 219161   73  2  1   80  111   139 0.882  14.63

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 109476 109576  101  2  2   58  114    35 0.864   2.83
S.002 Term + 113444 113552  109  2  1  107   48    74 0.899   3.28
S.003 Sngl + 120862 121224  363  0  0   78   38   266 0.969  14.69


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:1272115_1492998|GENSCAN_predicted_peptide_1|71_aa
XMWNAPPQAAPGYLENNYAPVLQSSAQGHQLLSSAEKPLSLLPNPSVTRASIMGLLAEEE
VAHNRHLVNID

>gi568815578r:1272115_1492998|GENSCAN_predicted_CDS_1|216_bp
nnaatgtggaatgctcctccacaggcagctcctgggtacctggagaacaactatgcacct
gtcctccagagctctgctcaagggcaccagcttctgagttctgcagagaagcccctctct
cttctgcccaacccctcagtgacacgtgcttcgattatgggactattggcagaggaggaa
gtggcacacaatagacacttggtaaatattgactga

>gi568815578r:1272115_1492998|GENSCAN_predicted_peptide_2|65_aa
MRKMLQLPCCPQQLIPVHLIPRGTSHAMLNSFTFNKIQGLNNAQCGSHLLEEGLCSKVTL
SVNLL

>gi568815578r:1272115_1492998|GENSCAN_predicted_CDS_2|198_bp
atgaggaaaatgctgcagctgccctgctgtcctcagcagctgatccctgtccacctgatt
ccccgtggtacttcccatgccatgctgaattctttcaccttcaataagatccagggcctc
aacaatgcccagtgtggctcacacttgctggaagagggtctttgctccaaggtcaccctc
tcagtgaatcttctctga

>gi568815578r:1272115_1492998|GENSCAN_predicted_peptide_3|587_aa
MPVCRMGAGGPGCMSCVMGWLPEHVHGDACGMSWNGRDMVPSRVAPGIPPIPPLTRTHSL
MAMSLPGSRRTSAGSRSGGTLGRSGLAVFAQCPQLPASQNEHLPLLPASRRTSPPVSVRD
AYGTSSLSSSSNSGSYKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIR
HLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIKQLKQ
VIDTVKNNLIDKDKGLQKYFVDINIQNKKLETLLHSMEVAQNGMAKEDGTGESAGGSPAR
SLTRSSTYTKLSDPAVCGDRQPGDPSSGSAEDGADSGFAAADDTLSRTDALEASSLLSSG
VDCGTEETSLHSSFGLGPRFPASNTYEKLLCGMEAGVQASCMQERAIQTDFVQYQPDLDT
ILEKVTQAQVCGTDPESGDRCPELDAHPSGPRDPNSAVVVTVGDELEAPEPITRGPTPQR
PGANPNPGQSVSVVCPMEEEEEAAVAEKEPKSYWSRHYIVDLLAVVVPAVPTVAWLCRSQ
RRQGQPIYNISSLLRGCCTVALHSIRRISCRSLSQPSPSPAGGGSQL

>gi568815578r:1272115_1492998|GENSCAN_predicted_CDS_3|1764_bp
atgcctgtgtgccgcatgggtgcgggaggacctggctgcatgtcctgcgtcatgggctgg
ctgcctgagcacgttcatggagacgcgtgtggcatgtcttggaatggcagggacatggta
ccttctcgtgttgcccccgggataccgcccatcccaccccttactcggacccacagcctc
atggccatgtccctgccaggaagtagacggacctctgctggatcacgcagcgggggcact
ttgggccgcagcggcctggcagtgttcgcccagtgtccgcagctgcccgccagccagaac
gagcacctgcctcttcttcctgcctccaggcgcacctctccacctgtgagcgtgcgggat
gcctacggcacctcttcgctcagcagcagcagcaattctggctcctacaagggcagtgac
agcagtcccacgccaaggcgctccatgaaatacacgctgtgcagtgacaaccatggcatc
aagcccccgaccccggagcagtacctgacccccctgcagcagaaggaggtgtgcatccgg
cacctgaaagcccggctgaaggacacacaggaccggctccaggaccgggacacagagatt
gatgacctgaagacgcagctgtcacgcatgcaggaggactggattgaggaggagtgccac
cgcgtggaggcccagctggccctgaaggaggcccgaaaggagatcaagcagctcaagcag
gtcatcgacactgtcaagaacaacctgattgacaaggacaaggggctgcagaagtacttc
gtggacatcaacatccagaacaagaagctggagacgctgctgcacagcatggaggtggcc
cagaatggcatggccaaggaggatggcactggggagtcagccggtgggtcccctgcccgc
tccctcacccgcagctccacctacaccaagctgagtgacccggctgtctgtggtgaccgc
cagccgggtgatccctccagcggctctgctgaggatggggcagacagtggctttgcagca
gccgatgacacactgagccggacggacgcgctggaagccagcagcctgctgtcgtcgggg
gtggactgtggcaccgaggagacctcgctgcacagctccttcggcctgggcccccgcttc
cctgccagcaacacctatgagaagctgctgtgtggcatggaggctggtgtgcaggccagc
tgcatgcaggagcgtgccatccagacagacttcgtgcagtaccagcctgaccttgacacc
atcctggagaaagtgacccaggcccaggtctgtgggacagaccctgagtcaggggacagg
tgcccagagctggatgcccacccttcagggcccagagaccccaactcagcagtggtggtg
acagtgggtgatgagctagaggccccagagcccatcacccgtggacccaccccacagcgg
cctggtgccaaccccaaccctggccagtcggtgagcgtggtgtgccccatggaagaggag
gaggaggctgccgtggctgagaaggagcccaagagctactggagccgccactacatcgtg
gatctgctggctgtggtggtgccggccgtgcccacggtggcctggctttgccgctcccag
cggcgccagggccagcccatctacaacatcagctccctgctgcggggctgctgcactgtg
gccttgcactccatccgcaggatcagctgccgctcgctgagccagccgagtcccagccca
gcgggcggcggctcccagctctga

>gi568815578r:1272115_1492998|GENSCAN_predicted_peptide_4|444_aa
MGPSEAEFAAAAVLYSMQQNGCQLLLGRSGSQLRDRATFQGGKQIQQRQQLEKVVEQHLA
CRGPKSGPSHSGPGQSLTQDASPASPGNSHFPTTSSGGWKPKIKVLANSVSVLYPNLAEL
ENYMGLSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIH
LCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQ
VVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNH
YVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKAWHLSSSCRTSTAWS
LTGSLHLCIDAGSEHTHMHSRAGPGPPATTVPGPVPGLSGELLPPLTRRKAHRRPQESPR
KRGPSTLWARALVTHTGGLRPEQE

>gi568815578r:1272115_1492998|GENSCAN_predicted_CDS_4|1335_bp
atgggcccatcagaggctgagtttgcagcagcagctgtcctgtacagcatgcagcaaaac
ggctgtcagctcttattaggaagatcaggaagccagctgagagacagggctacgtttcag
ggagggaaacagattcagcagcggcagcagctggagaaggtcgtggagcagcaccttgcc
tgcagaggacctaaaagtggaccaagccattcaggcccaggtcagagcctcacccaagat
gccagccctgccagtccaggcaacagccatttccccaccaccagctctggaggctggaag
cccaagatcaaggttctggccaattcagtttctgttttgtacccaaacttggcagaactg
gaaaattatatgggtctttccctctccagccaagaagtccaggagagcctgcttcagatt
ccagagggtgacagtacagcggtctcgggccccgggcccggccagatggtggcaccggta
accgggtacagcctgggcgtgcggcgagctgagatcaagcccggggtgcgcgagatccac
ctgtgcaaggacgagcgcggcaagaccgggctgaggctgcggaaggtcgaccaggggctc
tttgtgcagttggtccaggccaacacccctgcatcccttgtggggctgcgctttggggac
cagctcctgcagattgacgggcgtgactgtgctgggtggagctcgcacaaagcccatcag
gtggtgaagaaggcatcaggcgataagattgtcgtggtggttcgggacaggccgttccag
cggactgtcaccatgcacaaggacagcatgggccacgtcggcttcgtgatcaagaagggg
aagattgtctctctggtcaaagggagttctgcggcccgcaacgggctcctcaccaaccac
tacgtgtgtgaggtggacgggcagaatgttatcgggctgaaggacaaaaagatcatggag
attctggccacggctgggaacgttgtcaccctgaccatcatccccagtgtgatctacgag
cacatggtcaaaaaggcatggcacctgagcagcagctgccgcacctccaccgcctggagc
ctcacaggcagcctgcacctttgcatagatgcgggatctgagcacacacacatgcactcc
agagctgggccagggccaccggccaccacagtcccagggcctgtcccagggctgagtggg
gagctgctccctccactgacaagaagaaaagcccatcgaaggccccaggagagcccccga
aagagaggaccctcaacactgtgggccagggccctcgtgacccacaccggtggtctcagg
ccagaacaggagtag

>gi568815578r:1272115_1492998|GENSCAN_predicted_peptide_5|289_aa
MAAMVLGTLYCISCLVLALGVKEQLGGQQAISAAVSGNIGSWSRRCVPPVLFPWPLDSDS
VGHKKSDPIRIINFHMLNKNVCMEMLNRLEAQRKGRRTKQVTRQTQLYPEASGLPEVSGL
LGFRSLFRRPGFPGRRAPCGARTQGWARRAEVLGRAVEPPPGRCWSTPPVAPPARSASAA
AMGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG
WEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE

>gi568815578r:1272115_1492998|GENSCAN_predicted_CDS_5|870_bp
atggctgccatggtcctgggcacactgtactgcatctcctgcttggtgctggctctgggg
gtgaaggaacagttagggggacagcaggccatttccgcagcagttagtggaaatattggt
tcttggagcaggcgctgcgtgcctccagtgcttttcccctggcccctggattctgattcc
gttgggcataagaagagtgacccaattcgtattatcaactttcacatgctcaataagaat
gtatgcatggagatgcttaaccggctggaagcacagaggaagggcaggagaacgaagcaa
gtcacccggcaaacacagctgtatccggaggcctccgggcttccggaggtctcggggctt
ctgggcttccggtccctcttccggaggcctgggtttccgggacgtcgcgcgccgtgtggg
gcgcgcacgcagggctgggcgcgacgcgccgaggtactaggcagagccgtggaaccgccg
ccaggtcgctgttggtccacgccgcccgtcgcgccgcccgcccgctcagcgtccgccgcc
gccatgggagtgcaggtggaaaccatctccccaggagacgggcgcaccttccccaagcgc
ggccagacctgcgtggtgcactacaccgggatgcttgaagatggaaagaaatttgattcc
tcccgggacagaaacaagccctttaagtttatgctaggcaagcaggaggtgatccgaggc
tgggaagaaggggttgcccagatgagtgtgggtcagagagccaaactgactatatctcca
gattatgcctatggtgccactgggcacccaggcatcatcccaccacatgccactctcgtc
ttcgatgtggagcttctaaaactggaatga

>gi568815578r:1272115_1492998|GENSCAN_predicted_peptide_6|409_aa
MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVD
DLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDV
HVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRD
EDFVKPKGAFKAFTGEGQKLGSPCSVEDTKEEKGRVTCPHYSGARELAITYEIYDSGFEV
NSAGPVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDI
RLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT

>gi568815578r:1272115_1492998|GENSCAN_predicted_CDS_6|1230_bp
atggcggcggagcgacaggaggcgctgagggagttcgtggcggtgacgggcgccgaggag
gaccgggcccgcttctttctcgagtcggccggctgggacttgcagatcgcgctagcgagc
ttttatgaggacggaggggatgaagacattgtgaccatttcgcaggcaacccccagttca
gtgtccagaggcacagcccccagtgataatagagtgacatccttcagagacctcattcat
gaccaagatgaagatgaggaggaagaggaaggccagaggttttatgctgggggctcagag
agaagtggacagcagattgttggccctcccaggaagaaaagtcccaacgagctggtggat
gatctctttaaaggtgccaaagagcatggagctgtagctgtggagcgagtgaccaagagc
cctggagagaccagtaaaccgagaccatttgcaggaggtggctaccgccttggggcagca
ccagaggaagagtctgcctatgtggcaggagaaaagaggcagcattccagccaagatgtt
catgtagtattgaaactctggaagagtggattcagcctggataatggagaactcagaagc
taccaagacccatccaatgcccagtttctggagtctatccgcagaggggaggtgccagca
gagcttcggaggctagctcacggtggacaggtgaacttggatatggaggaccatcgggac
gaggactttgtgaagcccaaaggagccttcaaagccttcactggcgagggtcagaaactg
ggcagcccttgttcagttgaagacaccaaggaggaaaaaggccgagtaacttgcccacat
tactcaggagcgagggagctagcaataacgtatgaaatatatgactcagggtttgaagtg
aattctgctggacctgtgttgagtaccagctctccagcccaacaggcagaaaatgaagcc
aaagccagctcttccatcttaatcgacgaatcagagcctaccacaaacatccaaattcgg
cttgcagacggcgggaggctggtgcagaaatttaaccacagccacaggatcagcgacatc
cgactcttcatcgtggatgcccggccagccatggctgccaccagctttatcctcatgact
actttcccgaacaaagagctggctgatgagagccagaccctgaaggaagccaacctgctc
aatgctgtcatcgtgcagcggttaacataa

>gi568815578r:1272115_1492998|GENSCAN_predicted_peptide_7|338_aa
MSAPTCLAHLPPCFLLLALVLVPSDASGQSSRNDWQVLQPEGPMLVAEGETLLLRCMVVG
SCTDGMIKWVKVSTQDQQEIYNFKRGSFPGVMPMIQRTSEPLNCDYSIYIHNVTREHTGT
YHCVRFDGLSEHSEMKSDEGTSVLVKGAGDPEPDLWIIQPQELVLGTTGDTVFLNCTVLG
DGPPGPIRWFQGAGLSREAIYNFGGISHPKETAVQASNNDFSILLQNVSSEDAGTYYCVK
FQRKPNRQYLSGQGTSLKVKAKSTSSKEAEFTSEPATEMSPTGLLVVFAPVVLGLKAITL
AALLLALATSRRSPGQEDVKTTGPAGAMNTLAWSKGQE

>gi568815578r:1272115_1492998|GENSCAN_predicted_CDS_7|1017_bp
atgtcggcccccacctgcctggcccacttgcctccctgcttcctgctgctggcactggtc
cttgtcccctcagatgcctctgggcagagcagcaggaatgactggcaggtgctacagccc
gagggccccatgctggtggcagaaggtgagacacttctactgaggtgtatggtggtcggc
tcctgcactgatggtatgataaaatgggtgaaggtgagcactcaggaccaacaggaaatt
tataactttaaacgtggctccttccctggggtaatgcccatgatccaacggacatcagaa
ccactgaattgtgattattccatctatatccacaatgtcaccagggagcacactggaacc
taccactgtgtgaggtttgatggtttgagtgaacactcagaaatgaaatcggatgaaggc
acctcagtgcttgtgaagggagctggggaccctgaaccagacctgtggatcatccagccc
caggaattggtgttggggaccactggagacactgtctttctgaactgcacagtgcttgga
gacggtccccctggacccatcaggtggttccagggagctggtctgagccgggaggccatt
tacaactttggaggcatctcccaccccaaggagacagcggtgcaggcctccaacaatgac
ttcagcattcttctgcaaaacgtctccagtgaggatgcaggcacctattactgtgtaaag
tttcagaggaaacccaacaggcaatacctgtctggacagggcaccagcctgaaagtgaaa
gcaaaatctacctcttccaaagaggcagaattcaccagtgaacctgcaactgagatgtct
ccaacaggcctcctggttgtgttcgcacctgtggtcctggggctgaaggcaattaccttg
gctgcactcctactggccctggctacctctcggaggagccctgggcaagaagatgtcaag
accacaggcccagcaggagccatgaacaccttagcatggagcaagggtcaagagtga