Result of FASTA (ccds) for pF1KB3455
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3455, 160 aa
  1>>>pF1KB3455 160 - 160 aa - 160 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8467+/-0.0008; mu= 6.9003+/- 0.049
 mean_var=138.1633+/-28.140, 0's: 0 Z-trim(112.2): 34  B-trim: 24 in 1/52
 Lambda= 0.109113
 statistics sampled from 12961 (12994) to 12961 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.399), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS9771.1 MAX gene_id:4149|Hs108|chr14            ( 160) 1032 172.7 8.6e-44
CCDS9772.1 MAX gene_id:4149|Hs108|chr14            ( 151)  909 153.3 5.5e-38
CCDS41965.1 MAX gene_id:4149|Hs108|chr14           ( 103)  648 112.1 9.7e-26
CCDS9770.1 MAX gene_id:4149|Hs108|chr14            (  83)  390 71.4 1.4e-13
CCDS9774.1 MAX gene_id:4149|Hs108|chr14            (  96)  382 70.2 3.7e-13
CCDS81813.1 MAX gene_id:4149|Hs108|chr14           (  97)  382 70.2 3.7e-13


>>CCDS9771.1 MAX gene_id:4149|Hs108|chr14                 (160 aa)
 initn: 1032 init1: 1032 opt: 1032  Z-score: 899.7  bits: 172.7 E(32554): 8.6e-44
Smith-Waterman score: 1032; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KB3 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
               70        80        90       100       110       120

              130       140       150       160
pF1KB3 SLYTNAKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
       ::::::::::::::::::::::::::::::::::::::::
CCDS97 SLYTNAKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
              130       140       150       160

>>CCDS9772.1 MAX gene_id:4149|Hs108|chr14                 (151 aa)
 initn: 909 init1: 909 opt: 909  Z-score: 795.4  bits: 153.3 E(32554): 5.5e-38
Smith-Waterman score: 943; 94.4% identity (94.4% similar) in 160 aa overlap (1-160:1-151)

               10        20        30        40        50        60
pF1KB3 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
       ::::::::::::         :::::::::::::::::::::::::::::::::::::::
CCDS97 MSDNDDIEVESD---------ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
               10                 20        30        40        50 

               70        80        90       100       110       120
pF1KB3 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
              60        70        80        90       100       110 

              130       140       150       160
pF1KB3 SLYTNAKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
       ::::::::::::::::::::::::::::::::::::::::
CCDS97 SLYTNAKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
             120       130       140       150 

>>CCDS41965.1 MAX gene_id:4149|Hs108|chr14                (103 aa)
 initn: 648 init1: 648 opt: 648  Z-score: 575.6  bits: 112.1 E(32554): 9.7e-26
Smith-Waterman score: 648; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KB3 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
       ::::::::::::::::::::::::::::::::::::::                      
CCDS41 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQGESES                 
               70        80        90       100                    

              130       140       150       160
pF1KB3 SLYTNAKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS

>>CCDS9770.1 MAX gene_id:4149|Hs108|chr14                 (83 aa)
 initn: 390 init1: 390 opt: 390  Z-score: 357.3  bits: 71.4 E(32554): 1.4e-13
Smith-Waterman score: 390; 90.5% identity (98.4% similar) in 63 aa overlap (1-63:1-63)

               10        20        30        40        50        60
pF1KB3 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::...
CCDS97 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKGTK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
        ..                                                         
CCDS97 MKLTLPPVFPYEHLPFPTVFCHG                                     
               70        80                                        

>>CCDS9774.1 MAX gene_id:4149|Hs108|chr14                 (96 aa)
 initn: 394 init1: 382 opt: 382  Z-score: 349.7  bits: 70.2 E(32554): 3.7e-13
Smith-Waterman score: 382; 100.0% identity (100.0% similar) in 57 aa overlap (1-57:1-57)

               10        20        30        40        50        60
pF1KB3 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS97 MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKLYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDN
                                                                   
CCDS97 LFWKLCTPVLHRQSLMQKCHTFISSYQVHKKKECKI                        
               70        80        90                              

>>CCDS81813.1 MAX gene_id:4149|Hs108|chr14                (97 aa)
 initn: 382 init1: 382 opt: 382  Z-score: 349.6  bits: 70.2 E(32554): 3.7e-13
Smith-Waterman score: 382; 93.8% identity (98.5% similar) in 65 aa overlap (96-160:33-97)

          70        80        90       100       110       120     
pF1KB3 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALEKARSSAQLQTNYPSSDNSLYTN
                                     ... ::::::::::::::::::::::::::
CCDS81 FWSSKGKARADQVLCSWGIHFSSSLMEDASKRKFRALEKARSSAQLQTNYPSSDNSLYTN
             10        20        30        40        50        60  

         130       140       150       160
pF1KB3 AKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
       :::::::::::::::::::::::::::::::::::
CCDS81 AKGSTISAFDGGSDSSSESEPEEPQSRKKLRMEAS
             70        80        90       




160 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:29:50 2016 done: Fri Nov  4 02:29:50 2016
 Total Scan time:  2.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com