FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
pF1KB3413, 339 aa
vs /omim/omim.rfq.tfa library
10741820 residues in 18658 sequences
Expectation_n fit: rho(ln(x))= 4.5222+/-0.000499; mu= 14.3768+/- 0.030
mean_var=92.5304+/-19.138, 0's: 0 Z-trim: 81 B-trim: 373 in 1/58
Lambda= 0.133331
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, open/ext: -10/-2, width: 16
The best scores are: opt bits E(18658)
NP_004795 (OMIM: 604333) WD repeat domain 39 [Homo ( 339) 2444 479.9 7.2e-136
NP_599020 (OMIM: 400033) transducin beta-like 1Y [ ( 522) 373 81.8 7.8e-16
NP_150600 (OMIM: 400033) transducin beta-like 1Y [ ( 522) 373 81.8 7.8e-16
NP_599021 (OMIM: 400033) transducin beta-like 1Y [ ( 522) 373 81.8 7.8e-16
NP_005638 (OMIM: 300196) transducin beta-like 1X [ ( 577) 369 81.1 1.4e-15
NP_000421 (OMIM: 247200,601545,607432) platelet-ac ( 410) 342 75.7 4.2e-14
NP_006775 (OMIM: 604737) WD repeat-containing prot ( 943) 309 69.8 5.7e-12
NP_004688 (OMIM: 607795) PRP4 pre-mRNA processing ( 522) 295 66.8 2.6e-11
NP_005877 (OMIM: 602703) katanin p80 subunit B 1 [ ( 655) 263 60.8 2.1e-09
NP_001151 (OMIM: 602233) apoptotic peptidase activ (1194) 264 61.3 2.6e-09
NP_863658 (OMIM: 602233) apoptotic peptidase activ (1205) 264 61.3 2.7e-09
NP_899195 (OMIM: 600152) SEC13 protein [Homo sapie ( 322) 255 58.8 4e-09
NP_008882 (OMIM: 601787) TBP-associated factor 5 [ ( 800) 253 59.0 9e-09
NP_006569 (OMIM: 604447) guanine nucleotide-bindin ( 353) 243 56.6 2.1e-08
NP_057278 (OMIM: 604447) guanine nucleotide-bindin ( 395) 243 56.6 2.2e-08
NP_005040 (OMIM: 601475) PWP2 periodic tryptophan ( 919) 239 56.4 6.3e-08
NP_004757 (OMIM: 606990) coatomer protein complex, ( 906) 235 55.6 1.1e-07
NP_005264 (OMIM: 139390) guanine nucleotide-bindin ( 340) 229 53.9 1.3e-07
NP_599027 (OMIM: 610091) WD repeat and SOCS box-co ( 275) 228 53.5 1.3e-07
NP_056441 (OMIM: 610091) WD repeat and SOCS box-co ( 421) 228 53.8 1.7e-07
NP_115737 (OMIM: 606929) THO complex 3 [Homo sapie ( 351) 225 53.1 2.3e-07
NP_003316 (OMIM: 600237) HIR histone cell cycle re (1017) 228 54.3 2.9e-07
NP_005711 (OMIM: 604223) actin related protein 2/3 ( 372) 222 52.6 3.5e-07
NP_009041 (OMIM: 601686) telomerase-associated pro (2627) 222 53.7 1.1e-06
NP_387449 (OMIM: 605651) F-box and WD repeat domai ( 508) 201 48.7 7e-06
NP_387448 (OMIM: 605651) F-box and WD repeat domai ( 529) 201 48.7 7.2e-06
NP_036432 (OMIM: 605651) F-box and WD repeat domai ( 542) 201 48.7 7.3e-06
NP_006444 (OMIM: 605915) transducin beta-like 3 [H ( 808) 201 49.0 9.3e-06
NP_005432 (OMIM: 601245) chromatin assembly factor ( 559) 198 48.2 1.1e-05
NP_078811 (OMIM: 611668) coronin 7 [Homo sapiens] ( 925) 200 48.9 1.1e-05
NP_003930 (OMIM: 603482) beta-transducin repeat co ( 569) 197 48.0 1.3e-05
NP_378663 (OMIM: 603482) beta-transducin repeat co ( 605) 197 48.0 1.3e-05
NP_001026859 (OMIM: 603873) phospholipase A2-activ ( 795) 197 48.2 1.6e-05
NP_006400 (OMIM: 604220) actin related protein 2/3 ( 370) 193 47.0 1.7e-05
NP_037361 (OMIM: 602233) apoptotic peptidase activ (1237) 195 48.1 2.7e-05
NP_863651 (OMIM: 602233) apoptotic peptidase activ (1248) 195 48.1 2.7e-05
NP_079510 (OMIM: 609540) WD repeat domain 61 [Homo ( 305) 188 45.9 2.9e-05
NP_006089 (OMIM: 176981) guanine nucleotide bindin ( 317) 188 45.9 3e-05
NP_055317 (OMIM: 608330) PRP19/PSO4 pre-mRNA proce ( 504) 188 46.2 3.9e-05
NP_057347 (OMIM: 603619) Fzr1 protein [Homo sapien ( 493) 179 44.5 0.00013
NP_065174 (OMIM: 609849) coronin, actin binding pr ( 489) 176 43.9 0.00019
NP_001018080 (OMIM: 609849) coronin, actin binding ( 489) 176 43.9 0.00019
NP_112493 (OMIM: 609263) sec13-like protein isofor ( 360) 174 43.3 0.00021
NP_001013455 (OMIM: 609263) sec13-like protein iso ( 421) 174 43.4 0.00023
NP_004362 (OMIM: 601924) coatomer protein complex, (1224) 178 44.8 0.00026
NP_001091868 (OMIM: 601924) coatomer protein compl (1233) 178 44.8 0.00026
NP_001013433 (OMIM: 606278) F-box and WD repeat do ( 589) 174 43.6 0.00028
NP_001246 (OMIM: 603618) cell division cycle 20 [H ( 499) 173 43.3 0.00029
NP_060785 (OMIM: 606278) F-box and WD repeat domai ( 627) 174 43.6 0.00029
NP_361014 (OMIM: 606278) F-box and WD repeat domai ( 707) 174 43.7 0.00031
>>NP_004795 (OMIM: 604333) WD repeat domain 39 [Homo sap (339 aa)
initn: 2444 init1: 2444 opt: 2444 Z-score: 2548.4 bits: 479.9 E(): 7.2e-136
Smith-Waterman score: 2444; 100.000% identity (100.000% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ
250 260 270 280 290 300
310 320 330
pF1KB3 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
:::::::::::::::::::::::::::::::::::::::
NP_004 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
310 320 330
>>NP_599020 (OMIM: 400033) transducin beta-like 1Y [Homo (522 aa)
initn: 348 init1: 146 opt: 373 Z-score: 393.4 bits: 81.8 E(): 7.8e-16
Smith-Waterman score: 401; 33.977% identity (53.282% similar) in 259 aa overlap (11-221:232-479)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: ::::: . :
NP_599 TARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTS--LDWNSDGTLLAMGSYDGFA
210 220 230 240 250
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. :::. ::. : :: :: :.:
NP_599 RIWTENGN---LASTLGQ-HKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFP
260 270 280 290 300 310
100 110 120
pF1KB3 FE-----------------C----------------VTTLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : ::: :::
NP_599 FHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLA
320 330 340 350 360 370
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------SQELLASASYDD
.:: : .. .: . .. :: :..:.... . : : :. .:::::.:.
NP_599 SCSDDMTLKIWSMKQD---ACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDS
380 390 400 410 420 430
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. :. :: :: :. :.:.::.:.:. ::: : :. :.::
NP_599 TVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSY
440 450 460 470 480 490
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
NP_599 QGTGGIFEVCWNARGDKVGASASDGSVCVLDL
500 510 520
>>NP_150600 (OMIM: 400033) transducin beta-like 1Y [Homo (522 aa)
initn: 348 init1: 146 opt: 373 Z-score: 393.4 bits: 81.8 E(): 7.8e-16
Smith-Waterman score: 401; 33.977% identity (53.282% similar) in 259 aa overlap (11-221:232-479)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: ::::: . :
NP_150 TARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTS--LDWNSDGTLLAMGSYDGFA
210 220 230 240 250
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. :::. ::. : :: :: :.:
NP_150 RIWTENGN---LASTLGQ-HKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFP
260 270 280 290 300 310
100 110 120
pF1KB3 FE-----------------C----------------VTTLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : ::: :::
NP_150 FHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLA
320 330 340 350 360 370
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------SQELLASASYDD
.:: : .. .: . .. :: :..:.... . : : :. .:::::.:.
NP_150 SCSDDMTLKIWSMKQD---ACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDS
380 390 400 410 420 430
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. :. :: :: :. :.:.::.:.:. ::: : :. :.::
NP_150 TVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSY
440 450 460 470 480 490
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
NP_150 QGTGGIFEVCWNARGDKVGASASDGSVCVLDL
500 510 520
>>NP_599021 (OMIM: 400033) transducin beta-like 1Y [Homo (522 aa)
initn: 348 init1: 146 opt: 373 Z-score: 393.4 bits: 81.8 E(): 7.8e-16
Smith-Waterman score: 401; 33.977% identity (53.282% similar) in 259 aa overlap (11-221:232-479)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: ::::: . :
NP_599 TARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTS--LDWNSDGTLLAMGSYDGFA
210 220 230 240 250
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. :::. ::. : :: :: :.:
NP_599 RIWTENGN---LASTLGQ-HKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFP
260 270 280 290 300 310
100 110 120
pF1KB3 FE-----------------C----------------VTTLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : ::: :::
NP_599 FHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLA
320 330 340 350 360 370
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------SQELLASASYDD
.:: : .. .: . .. :: :..:.... . : : :. .:::::.:.
NP_599 SCSDDMTLKIWSMKQD---ACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDS
380 390 400 410 420 430
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. :. :: :: :. :.:.::.:.:. ::: : :. :.::
NP_599 TVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSY
440 450 460 470 480 490
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
NP_599 QGTGGIFEVCWNARGDKVGASASDGSVCVLDL
500 510 520
>>NP_005638 (OMIM: 300196) transducin beta-like 1X [Homo (577 aa)
initn: 354 init1: 150 opt: 369 Z-score: 388.8 bits: 81.1 E(): 1.4e-15
Smith-Waterman score: 405; 33.977% identity (53.668% similar) in 259 aa overlap (11-221:285-532)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
::.. : : :: :::::. . :
NP_005 TARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTS--LDWNTNGTLLATGSYDGFA
260 270 280 290 300 310
50 60 70 80 90
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
::: .:. :.:.. :. . . :. :::. ::. : :: :: :.:
NP_005 RIWTEDGN---LASTLGQ-HKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFP
320 330 340 350 360
100 110 120
pF1KB3 FE-----------------C----------------VTTLEGHENEVKSVAWAPSGNLLA
:. : : :..:: :::... : ::: :::
NP_005 FHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLA
370 380 390 400 410 420
130 140 150 160 170
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------SQELLASASYDD
.:: : .. .: . .: :. :..:.... . : : :. .:::::.:.
NP_005 SCSDDMTLKIWSMKQE---VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDS
430 440 450 460 470 480
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
::.:. :. :: :: :. :.:.::.:.:. ::: : :. :.::
NP_005 TVRLWDIERG--VCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSY
490 500 510 520 530 540
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
NP_005 RGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK
550 560 570
>>NP_000421 (OMIM: 247200,601545,607432) platelet-activa (410 aa)
initn: 391 init1: 155 opt: 342 Z-score: 362.3 bits: 75.7 E(): 4.2e-14
Smith-Waterman score: 374; 32.018% identity (58.333% similar) in 228 aa overlap (14-221:149-365)
10 20 30 40
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIW
: :: .... .: :::::..: :..:
NP_000 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDS-VQDISFDHSGKLLASCSADMTIKLW
120 130 140 150 160 170
50 60 70 80 90 100
pF1KB3 GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG
.: . : .. .::...: .:: : :....::: : : .:. : . :: :. :
NP_000 DFQG--FECIRTM-HGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV-QTGY-CVKTFTG
180 190 200 210 220 230
110 120 130 140 150 160
pF1KB3 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE
:.. :. : .:.:.:.:: :..: :: : . :: . : : . :. . : : .
NP_000 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---ECKAELREHEHVVECISWAPESS
240 250 260 270 280
170 180 190 200
pF1KB3 --------------------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD
.: :.: : :.:.. . . .: :: ::.. : .. :
NP_000 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW--DVSTGMCLMTLVGHDNWVRGVLFH
290 300 310 320 330 340
210 220 230 240 250 260
pF1KB3 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL
.:. . ::.::.:.:.:
NP_000 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW
350 360 370 380 390 400
>>NP_006775 (OMIM: 604737) WD repeat-containing protein (943 aa)
initn: 279 init1: 130 opt: 309 Z-score: 324.1 bits: 69.8 E(): 5.7e-12
Smith-Waterman score: 309; 28.889% identity (58.667% similar) in 225 aa overlap (7-223:488-704)
10 20 30
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGG
:: . :: :. : .. .: ... :.
NP_006 LCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLETIDAH-DGALWSMSLSPDQRGFVTGGA
460 470 480 490 500 510
40 50 60 70 80
pF1KB3 DRRIRIWGTE--GDSWICKSVLSEGHQRTVRK------VAWSPCGNYLASASFDATTCIW
:. ...: : : .. :: . ::.. :..:: . :: . .: :. :.
NP_006 DKSVKFWDFELVKDENSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKIF
520 530 540 550 560 570
90 100 110 120 130 140
pF1KB3 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS
: .. .: ::. : . . .: :.:: : :..: .: .: : : . : .
NP_006 YV--DTLKFFLSLYGHKLPVICMDISHDGALIATGSADRNVKIWGLDFGD---CHKSLFA
580 590 600 610 620 630
150 160 170 180 190 200
pF1KB3 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR
: ..: .. . :...:. .:. : .: . . : . :::::.. .: :: .:::.
NP_006 HDDSVMYLQFVPKSHLFFTAGKDHKIKQW--DADKFEHIQTLEGHHQEIWCLAVSPSGDY
640 650 660 670 680
210 220 230 240 250 260
pF1KB3 LASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA
..: : :...:.:..
NP_006 VVSSSHDKSLRLWERTREPLILEEEREMEREAEYEESVAKEDQPAVPGETQGDSYFTGKK
690 700 710 720 730 740
>>NP_004688 (OMIM: 607795) PRP4 pre-mRNA processing fact (522 aa)
initn: 327 init1: 113 opt: 295 Z-score: 312.3 bits: 66.8 E(): 2.6e-11
Smith-Waterman score: 352; 30.653% identity (62.814% similar) in 199 aa overlap (24-221:331-519)
10 20 30 40 50
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK
:.:.: .:.. :: :.: :.. : .
NP_004 ADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILH
310 320 330 340 350 360
60 70 80 90 100 110
pF1KB3 SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAW
.:::. : .:. :. .....:: .: . .:. :::: .:. .. .
NP_004 ---QEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVW--DLRTGRCIMFLEGHLKEIYGINF
370 380 390 400 410
120 130 140 150 160 170
pF1KB3 APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDD
.:.: .:: : :.. ::.. .. .:: .. .: . : : ..: . ..: ...::.
NP_004 SPNGYHIATGSGDNTCKVWDLRQR---RCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDN
420 430 440 450 460 470
180 190 200 210 220 230
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
:.:.. . : :: :::. : .: .. .:: .:.:: ::: ..:
NP_004 TAKIWTHP--GWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE
480 490 500 510 520
240 250 260 270 280 290
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
>>NP_005877 (OMIM: 602703) katanin p80 subunit B 1 [Homo (655 aa)
initn: 309 init1: 107 opt: 263 Z-score: 278.0 bits: 60.8 E(): 2.1e-09
Smith-Waterman score: 295; 25.725% identity (55.072% similar) in 276 aa overlap (8-283:13-261)
10 20 30 40 50
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV
: .. :: .. .. . .: :::. : : :. .:. . . :
NP_005 MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPN--CIMS
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP
:. :: :..: . . ....: ... .: . . . . :: ::. .. :. . :
NP_005 LT-GHTSPVESVRLNTPEELIVAGSQSGSIRVW--DLEAAKILRTLMGHKANICSLDFHP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK
:...:. :.: .. .:.. .. :: .:.: :. . . :. . ::::. : :::
NP_005 YGEFVASGSQDTNIKLWDIRRKG---CVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB3 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS
:. . . . :: . : . : :. ::: :.:::.:.: . : :.:
NP_005 LWDLTAGKMM--SEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLE---KFQVVSCI
180 190 200 210 220
240 250 260 270 280 290
pF1KB3 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT
..: : .... : : ..: .:..::. .:
NP_005 EGEP---------GPVRSVLFNPDGC----CLYSGC-QDSLRVYGWEPERCFDVVLVNWG
230 240 250 260 270
300 310 320 330
pF1KB3 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
NP_005 KVADLAICNDQLIGVAFSQSNVSSYVVDLTRVTRTGTVARDPVQDHRPLAQPLPNPSAPL
280 290 300 310 320 330
>>NP_001151 (OMIM: 602233) apoptotic peptidase activatin (1194 aa)
initn: 262 init1: 127 opt: 264 Z-score: 276.2 bits: 61.3 E(): 2.6e-09
Smith-Waterman score: 279; 23.889% identity (52.500% similar) in 360 aa overlap (8-334:639-979)
10 20 30
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGD
: .. :: : . :.. ..:.:. :
NP_001 HACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHED-EVLCCAFSTDDRFIATCSVD
610 620 630 640 650 660
40 50 60 70 80 90
pF1KB3 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL--ASASFDATTCIWKKNQDDF
....::.. . . .: :.. : .. ...: :..: : .: ::
NP_001 KKVKIWNSMTGELV--HTYDE-HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK--
670 680 690 700 710 720
100 110 120 130 140
pF1KB3 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV------LNSH
:: .:. :: : :. ..:. .:::.:: : .. .:.. .: . ..: :..
NP_001 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDP
730 740 750 760 770 780
150 160 170 180 190 200
pF1KB3 TQDVKHVV----WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS
.:.. .: : . . :. . :.. . :. : .:: : : .. :.:.
NP_001 QEDMEVIVKCCSWSADGARIMVAAKN---KIFLWNTDSRSKVADCRGHLSWVHGVMFSPD
790 800 810 820 830
210 220 230 240 250
pF1KB3 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGS-DPSWKC--ICTLSGFHSRTIY------
:. . . :::.:.:.:. ....: . : .. . .:. : : .
NP_001 GSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRT
840 850 860 870 880 890
260 270 280 290 300
pF1KB3 ---------DIAWCQLTGALA-TACGDD--AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ
... : :. : : ::. ::... : :. : :. :..
NP_001 GQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEIL-ELVNNRIFQSRFQ--------HKK
900 910 920 930 940 950
310 320 330
pF1KB3 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
: . .. : :..: :::.:. :..:
NP_001 TVWHIQFTADEKTLISS-SDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSF
960 970 980 990 1000
339 residues in 1 query sequences
10741820 residues in 18658 library sequences
Tcomplib [34.26] (6 proc)
start: Fri Mar 7 08:58:15 2008 done: Fri Mar 7 08:58:16 2008
Total Scan time: 2.910 Total Display time: 0.070
Function used was FASTA [version 34.26.5 April 26, 2007]