Result of FASTA (omim) for pF1KB3413
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3413, 339 aa
  1>>>pF1KB3413 339 - 339 aa - 339 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4989+/-0.00044; mu= 10.2187+/- 0.027
 mean_var=165.0893+/-36.709, 0's: 0 Z-trim(115.1): 270  B-trim: 280 in 1/51
 Lambda= 0.099819
 statistics sampled from 24967 (25314) to 24967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.297), width:  16
 Scan time:  8.000

The best scores are:                                      opt bits E(85289)
NP_004795 (OMIM: 604333) probable cytosolic iron-s ( 339) 2444 364.4 1.9e-100
NP_001308124 (OMIM: 270710,602342,608628,616944) F ( 427)  398 69.9 1.1e-11
XP_016862674 (OMIM: 270710,602342,608628,616944) P ( 514)  398 70.0 1.3e-11
XP_006713809 (OMIM: 270710,602342,608628,616944) P ( 514)  398 70.0 1.3e-11
XP_011511445 (OMIM: 270710,602342,608628,616944) P ( 514)  398 70.0 1.3e-11
NP_001308122 (OMIM: 270710,602342,608628,616944) F ( 514)  398 70.0 1.3e-11
XP_011511443 (OMIM: 270710,602342,608628,616944) P ( 514)  398 70.0 1.3e-11
NP_001308123 (OMIM: 270710,602342,608628,616944) F ( 514)  398 70.0 1.3e-11
NP_078941 (OMIM: 270710,602342,608628,616944) F-bo ( 514)  398 70.0 1.3e-11
XP_005247832 (OMIM: 270710,602342,608628,616944) P ( 514)  398 70.0 1.3e-11
XP_011511444 (OMIM: 270710,602342,608628,616944) P ( 514)  398 70.0 1.3e-11
NP_150600 (OMIM: 400033) F-box-like/WD repeat-cont ( 522)  373 66.4 1.5e-10
NP_599021 (OMIM: 400033) F-box-like/WD repeat-cont ( 522)  373 66.4 1.5e-10
NP_599020 (OMIM: 400033) F-box-like/WD repeat-cont ( 522)  373 66.4 1.5e-10
XP_005262629 (OMIM: 400033) PREDICTED: F-box-like/ ( 536)  373 66.4 1.6e-10
XP_016885576 (OMIM: 400033) PREDICTED: F-box-like/ ( 540)  373 66.4 1.6e-10
XP_016885575 (OMIM: 400033) PREDICTED: F-box-like/ ( 577)  373 66.5 1.6e-10
XP_011543873 (OMIM: 300196) PREDICTED: F-box-like/ ( 526)  369 65.8 2.3e-10
NP_001132940 (OMIM: 300196) F-box-like/WD repeat-c ( 526)  369 65.8 2.3e-10
NP_001132939 (OMIM: 300196) F-box-like/WD repeat-c ( 526)  369 65.8 2.3e-10
NP_005638 (OMIM: 300196) F-box-like/WD repeat-cont ( 577)  369 65.9 2.5e-10
NP_001132938 (OMIM: 300196) F-box-like/WD repeat-c ( 577)  369 65.9 2.5e-10
XP_016880191 (OMIM: 601545,607432) PREDICTED: plat ( 345)  342 61.7 2.6e-09
XP_016880190 (OMIM: 601545,607432) PREDICTED: plat ( 410)  342 61.8 2.9e-09
NP_000421 (OMIM: 601545,607432) platelet-activatin ( 410)  342 61.8 2.9e-09
XP_016880188 (OMIM: 601545,607432) PREDICTED: plat ( 410)  342 61.8 2.9e-09
XP_016880189 (OMIM: 601545,607432) PREDICTED: plat ( 410)  342 61.8 2.9e-09
XP_011522205 (OMIM: 601545,607432) PREDICTED: plat ( 428)  342 61.8   3e-09
XP_011522203 (OMIM: 601545,607432) PREDICTED: plat ( 428)  342 61.8   3e-09
XP_011522204 (OMIM: 601545,607432) PREDICTED: plat ( 428)  342 61.8   3e-09
XP_016860391 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  318 58.2 2.7e-08
XP_016860390 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  318 58.2 2.7e-08
XP_016860389 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  318 58.2 2.7e-08
XP_011510137 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  318 58.2 2.7e-08
XP_016860387 (OMIM: 612173) PREDICTED: sperm-assoc ( 390)  318 58.3 3.1e-08
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478)  318 58.4 3.5e-08
XP_016860386 (OMIM: 612173) PREDICTED: sperm-assoc ( 512)  318 58.5 3.7e-08
XP_016860385 (OMIM: 612173) PREDICTED: sperm-assoc ( 512)  318 58.5 3.7e-08
XP_011510124 (OMIM: 612173) PREDICTED: sperm-assoc ( 528)  318 58.5 3.8e-08
XP_011510125 (OMIM: 612173) PREDICTED: sperm-assoc ( 528)  318 58.5 3.8e-08
XP_011510123 (OMIM: 612173) PREDICTED: sperm-assoc ( 537)  318 58.5 3.8e-08
XP_011510121 (OMIM: 612173) PREDICTED: sperm-assoc ( 577)  318 58.5   4e-08
XP_011510116 (OMIM: 612173) PREDICTED: sperm-assoc ( 600)  318 58.6 4.1e-08
NP_078808 (OMIM: 612173) sperm-associated antigen  ( 631)  318 58.6 4.2e-08
XP_011510118 (OMIM: 612173) PREDICTED: sperm-assoc ( 592)  309 57.3   1e-07
XP_011510120 (OMIM: 612173) PREDICTED: sperm-assoc ( 577)  305 56.7 1.5e-07
XP_011510119 (OMIM: 612173) PREDICTED: sperm-assoc ( 582)  305 56.7 1.5e-07
XP_011510117 (OMIM: 612173) PREDICTED: sperm-assoc ( 592)  305 56.7 1.5e-07
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279)  295 54.9 2.5e-07
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279)  295 54.9 2.5e-07


>>NP_004795 (OMIM: 604333) probable cytosolic iron-sulfu  (339 aa)
 initn: 2444 init1: 2444 opt: 2444  Z-score: 1924.2  bits: 364.4 E(85289): 1.9e-100
Smith-Waterman score: 2444; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ
              250       260       270       280       290       300

              310       320       330         
pF1KB3 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
       :::::::::::::::::::::::::::::::::::::::
NP_004 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
              310       320       330         

>>NP_001308124 (OMIM: 270710,602342,608628,616944) F-box  (427 aa)
 initn: 276 init1: 156 opt: 398  Z-score: 330.6  bits: 69.9 E(85289): 1.1e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:135-382)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
NP_001 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
          110       120       130       140         150       160  

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  ::.. ::. : :: ::       :.:  
NP_001 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
            170           180       190       200       210        

                                           100       110       120 
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
       :.                 : :                :..:: :::... : :.:::::
NP_001 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
      220       230       240       250       260       270        

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
       .:: : .. .: . ...   ::  :..:....  . : :.           .:::::.:.
NP_001 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
      280       290          300       310       320       330     

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  . :  .:  ::  :.  :.:.::.:.:. ::: : :. :.::           
NP_001 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
         340         350       360       370       380       390   

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
NP_001 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK                          
           400       410       420                                 

>>XP_016862674 (OMIM: 270710,602342,608628,616944) PREDI  (514 aa)
 initn: 276 init1: 156 opt: 398  Z-score: 329.7  bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
XP_016 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
             200       210       220       230         240         

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  ::.. ::. : :: ::       :.:  
XP_016 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
     250          260        270       280       290       300     

                                           100       110       120 
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
       :.                 : :                :..:: :::... : :.:::::
XP_016 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
         310       320       330       340       350       360     

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
       .:: : .. .: . ...   ::  :..:....  . : :.           .:::::.:.
XP_016 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
         370       380          390       400       410       420  

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  . :  .:  ::  :.  :.:.::.:.:. ::: : :. :.::           
XP_016 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
              430       440       450       460       470       480

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
XP_016 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK                          
              490       500       510                              

>>XP_006713809 (OMIM: 270710,602342,608628,616944) PREDI  (514 aa)
 initn: 276 init1: 156 opt: 398  Z-score: 329.7  bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
XP_006 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
             200       210       220       230         240         

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  ::.. ::. : :: ::       :.:  
XP_006 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
     250          260        270       280       290       300     

                                           100       110       120 
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
       :.                 : :                :..:: :::... : :.:::::
XP_006 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
         310       320       330       340       350       360     

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
       .:: : .. .: . ...   ::  :..:....  . : :.           .:::::.:.
XP_006 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
         370       380          390       400       410       420  

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  . :  .:  ::  :.  :.:.::.:.:. ::: : :. :.::           
XP_006 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
              430       440       450       460       470       480

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
XP_006 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK                          
              490       500       510                              

>>XP_011511445 (OMIM: 270710,602342,608628,616944) PREDI  (514 aa)
 initn: 276 init1: 156 opt: 398  Z-score: 329.7  bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
XP_011 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
             200       210       220       230         240         

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  ::.. ::. : :: ::       :.:  
XP_011 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
     250          260        270       280       290       300     

                                           100       110       120 
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
       :.                 : :                :..:: :::... : :.:::::
XP_011 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
         310       320       330       340       350       360     

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
       .:: : .. .: . ...   ::  :..:....  . : :.           .:::::.:.
XP_011 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
         370       380          390       400       410       420  

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  . :  .:  ::  :.  :.:.::.:.:. ::: : :. :.::           
XP_011 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
              430       440       450       460       470       480

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
XP_011 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK                          
              490       500       510                              

>>NP_001308122 (OMIM: 270710,602342,608628,616944) F-box  (514 aa)
 initn: 276 init1: 156 opt: 398  Z-score: 329.7  bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
NP_001 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
             200       210       220       230         240         

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  ::.. ::. : :: ::       :.:  
NP_001 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
     250          260        270       280       290       300     

                                           100       110       120 
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
       :.                 : :                :..:: :::... : :.:::::
NP_001 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
         310       320       330       340       350       360     

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
       .:: : .. .: . ...   ::  :..:....  . : :.           .:::::.:.
NP_001 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
         370       380          390       400       410       420  

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  . :  .:  ::  :.  :.:.::.:.:. ::: : :. :.::           
NP_001 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
              430       440       450       460       470       480

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
NP_001 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK                          
              490       500       510                              

>>XP_011511443 (OMIM: 270710,602342,608628,616944) PREDI  (514 aa)
 initn: 276 init1: 156 opt: 398  Z-score: 329.7  bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
XP_011 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
             200       210       220       230         240         

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  ::.. ::. : :: ::       :.:  
XP_011 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
     250          260        270       280       290       300     

                                           100       110       120 
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
       :.                 : :                :..:: :::... : :.:::::
XP_011 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
         310       320       330       340       350       360     

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
       .:: : .. .: . ...   ::  :..:....  . : :.           .:::::.:.
XP_011 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
         370       380          390       400       410       420  

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  . :  .:  ::  :.  :.:.::.:.:. ::: : :. :.::           
XP_011 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
              430       440       450       460       470       480

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
XP_011 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK                          
              490       500       510                              

>>NP_001308123 (OMIM: 270710,602342,608628,616944) F-box  (514 aa)
 initn: 276 init1: 156 opt: 398  Z-score: 329.7  bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
NP_001 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
             200       210       220       230         240         

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  ::.. ::. : :: ::       :.:  
NP_001 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
     250          260        270       280       290       300     

                                           100       110       120 
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
       :.                 : :                :..:: :::... : :.:::::
NP_001 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
         310       320       330       340       350       360     

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
       .:: : .. .: . ...   ::  :..:....  . : :.           .:::::.:.
NP_001 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
         370       380          390       400       410       420  

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  . :  .:  ::  :.  :.:.::.:.:. ::: : :. :.::           
NP_001 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
              430       440       450       460       470       480

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
NP_001 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK                          
              490       500       510                              

>>NP_078941 (OMIM: 270710,602342,608628,616944) F-box-li  (514 aa)
 initn: 276 init1: 156 opt: 398  Z-score: 329.7  bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
NP_078 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
             200       210       220       230         240         

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  ::.. ::. : :: ::       :.:  
NP_078 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
     250          260        270       280       290       300     

                                           100       110       120 
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
       :.                 : :                :..:: :::... : :.:::::
NP_078 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
         310       320       330       340       350       360     

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
       .:: : .. .: . ...   ::  :..:....  . : :.           .:::::.:.
NP_078 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
         370       380          390       400       410       420  

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  . :  .:  ::  :.  :.:.::.:.:. ::: : :. :.::           
NP_078 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
              430       440       450       460       470       480

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
NP_078 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK                          
              490       500       510                              

>>XP_005247832 (OMIM: 270710,602342,608628,616944) PREDI  (514 aa)
 initn: 276 init1: 156 opt: 398  Z-score: 329.7  bits: 70.0 E(85289): 1.3e-11
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
XP_005 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
             200       210       220       230         240         

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  ::.. ::. : :: ::       :.:  
XP_005 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
     250          260        270       280       290       300     

                                           100       110       120 
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
       :.                 : :                :..:: :::... : :.:::::
XP_005 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
         310       320       330       340       350       360     

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
       .:: : .. .: . ...   ::  :..:....  . : :.           .:::::.:.
XP_005 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
         370       380          390       400       410       420  

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  . :  .:  ::  :.  :.:.::.:.:. ::: : :. :.::           
XP_005 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
              430       440       450       460       470       480

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
XP_005 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK                          
              490       500       510                              




339 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:20:54 2016 done: Fri Nov  4 02:20:55 2016
 Total Scan time:  8.000 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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