Result of FASTA (ccds) for pF1KB3413
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3413, 339 aa
  1>>>pF1KB3413 339 - 339 aa - 339 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1023+/-0.00107; mu= 6.2836+/- 0.062
 mean_var=136.3043+/-29.255, 0's: 0 Z-trim(108.3): 151  B-trim: 396 in 1/49
 Lambda= 0.109855
 statistics sampled from 9941 (10137) to 9941 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.311), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS2019.1 CIAO1 gene_id:9391|Hs108|chr2           ( 339) 2444 399.1 2.7e-111
CCDS46961.1 TBL1XR1 gene_id:79718|Hs108|chr3       ( 514)  398 75.0 1.5e-13
CCDS14779.1 TBL1Y gene_id:90665|Hs108|chrY         ( 522)  373 71.0 2.4e-12
CCDS48078.1 TBL1X gene_id:6907|Hs108|chrX          ( 526)  369 70.4 3.7e-12
CCDS14133.1 TBL1X gene_id:6907|Hs108|chrX          ( 577)  369 70.4   4e-12
CCDS32528.1 PAFAH1B1 gene_id:5048|Hs108|chr17      ( 410)  342 66.0   6e-11


>>CCDS2019.1 CIAO1 gene_id:9391|Hs108|chr2                (339 aa)
 initn: 2444 init1: 2444 opt: 2444  Z-score: 2111.6  bits: 399.1 E(32554): 2.7e-111
Smith-Waterman score: 2444; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB3 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ
              250       260       270       280       290       300

              310       320       330         
pF1KB3 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
       :::::::::::::::::::::::::::::::::::::::
CCDS20 AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL
              310       320       330         

>>CCDS46961.1 TBL1XR1 gene_id:79718|Hs108|chr3            (514 aa)
 initn: 276 init1: 156 opt: 398  Z-score: 356.6  bits: 75.0 E(32554): 1.5e-13
Smith-Waterman score: 408; 32.8% identity (54.1% similar) in 259 aa overlap (11-221:222-469)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
CCDS46 TARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTS--LDWNSEGTLLATGSYDGFA
             200       210       220       230         240         

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  ::.. ::. : :: ::       :.:  
CCDS46 RIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFP
     250          260        270       280       290       300     

                                           100       110       120 
pF1KB3 FE-----------------CVT----------------TLEGHENEVKSVAWAPSGNLLA
       :.                 : :                :..:: :::... : :.:::::
CCDS46 FHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLA
         310       320       330       340       350       360     

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE---------LLASASYDD
       .:: : .. .: . ...   ::  :..:....  . : :.           .:::::.:.
CCDS46 SCSDDMTLKIWSMKQDN---CVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDS
         370       380          390       400       410       420  

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  . :  .:  ::  :.  :.:.::.:.:. ::: : :. :.::           
CCDS46 TVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY
              430       440       450       460       470       480

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
CCDS46 RGTGGIFEVCWNAAGDKVGASASDGSVCVLDLRK                          
              490       500       510                              

>>CCDS14779.1 TBL1Y gene_id:90665|Hs108|chrY              (522 aa)
 initn: 348 init1: 146 opt: 373  Z-score: 335.1  bits: 71.0 E(32554): 2.4e-12
Smith-Waterman score: 401; 34.0% identity (53.3% similar) in 259 aa overlap (11-221:232-479)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::  . :   
CCDS14 TARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTS--LDWNSDGTLLAMGSYDGFA
             210       220       230       240         250         

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  :::. ::. : :: ::       :.:  
CCDS14 RIWTENGN---LASTLGQ-HKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFP
     260          270        280       290       300       310     

                                           100       110       120 
pF1KB3 FE-----------------C----------------VTTLEGHENEVKSVAWAPSGNLLA
       :.                 :                : :..:: :::... : ::: :::
CCDS14 FHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLA
         320       330       340       350       360       370     

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------SQELLASASYDD
       .:: : .. .: . ..    ::  :..:....  . : :         :. .:::::.:.
CCDS14 SCSDDMTLKIWSMKQD---ACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDS
         380       390          400       410       420       430  

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  :.   ::  ::  :.  :.:.::.:.:. ::: : :. :.::           
CCDS14 TVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSY
            440         450       460       470       480       490

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
CCDS14 QGTGGIFEVCWNARGDKVGASASDGSVCVLDL                            
              500       510       520                              

>>CCDS48078.1 TBL1X gene_id:6907|Hs108|chrX               (526 aa)
 initn: 354 init1: 150 opt: 369  Z-score: 331.7  bits: 70.4 E(32554): 3.7e-12
Smith-Waterman score: 405; 34.0% identity (53.7% similar) in 259 aa overlap (11-221:234-481)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
CCDS48 TARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTS--LDWNTNGTLLATGSYDGFA
           210       220       230       240         250       260 

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  :::. ::. : :: ::       :.:  
CCDS48 RIWTEDGN---LASTLGQ-HKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFP
                270        280       290       300       310       

                                           100       110       120 
pF1KB3 FE-----------------C----------------VTTLEGHENEVKSVAWAPSGNLLA
       :.                 :                : :..:: :::... : ::: :::
CCDS48 FHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLA
       320       330       340       350       360       370       

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------SQELLASASYDD
       .:: : .. .: . .:    :.  :..:....  . : :         :. .:::::.:.
CCDS48 SCSDDMTLKIWSMKQE---VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDS
       380       390          400       410       420       430    

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  :.   ::  ::  :.  :.:.::.:.:. ::: : :. :.::           
CCDS48 TVRLWDIERG--VCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSY
          440         450       460       470       480       490  

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
CCDS48 RGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK                          
            500       510       520                                

>>CCDS14133.1 TBL1X gene_id:6907|Hs108|chrX               (577 aa)
 initn: 354 init1: 150 opt: 369  Z-score: 331.1  bits: 70.4 E(32554): 4e-12
Smith-Waterman score: 405; 34.0% identity (53.7% similar) in 259 aa overlap (11-221:285-532)

                                   10        20        30        40
pF1KB3                     MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRI
                                     ::.. :     : ::  :::::. . :   
CCDS14 TARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTS--LDWNTNGTLLATGSYDGFA
          260       270       280       290         300       310  

               50        60        70        80              90    
pF1KB3 RIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK------KNQDD
       :::  .:.     :.:.. :.  .  . :.  :::. ::. : :: ::       :.:  
CCDS14 RIWTEDGN---LASTLGQ-HKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFP
            320           330       340       350       360        

                                           100       110       120 
pF1KB3 FE-----------------C----------------VTTLEGHENEVKSVAWAPSGNLLA
       :.                 :                : :..:: :::... : ::: :::
CCDS14 FHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLA
      370       380       390       400       410       420        

             130       140       150       160                170  
pF1KB3 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP---------SQELLASASYDD
       .:: : .. .: . .:    :.  :..:....  . : :         :. .:::::.:.
CCDS14 SCSDDMTLKIWSMKQE---VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDS
      430       440          450       460       470       480     

            180       190       200       210       220       230  
pF1KB3 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV
       ::.:.  :.   ::  ::  :.  :.:.::.:.:. ::: : :. :.::           
CCDS14 TVRLWDIERG--VCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSY
         490         500       510       520       530       540   

            240       250       260       270       280       290  
pF1KB3 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF
                                                                   
CCDS14 RGTGGIFEVCWNARGDKVGASASDGSVCVLDLRK                          
           550       560       570                                 

>>CCDS32528.1 PAFAH1B1 gene_id:5048|Hs108|chr17           (410 aa)
 initn: 391 init1: 155 opt: 342  Z-score: 310.1  bits: 66.0 E(32554): 6e-11
Smith-Waterman score: 374; 32.0% identity (58.3% similar) in 228 aa overlap (14-221:149-365)

                                10        20        30        40   
pF1KB3                  MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIW
                                     : ::    .... .: :::::..:  :..:
CCDS32 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDS-VQDISFDHSGKLLASCSADMTIKLW
      120       130       140       150        160       170       

            50        60        70        80        90       100   
pF1KB3 GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG
         .:  . :  .. .::...: .::  : :....::: : :  .:.  :  . :: :. :
CCDS32 DFQG--FECIRTM-HGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEV-QTGY-CVKTFTG
       180          190       200       210       220         230  

           110       120       130       140       150       160   
pF1KB3 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE
       :.. :. :    .:.:.:.:: :..: :: :  .   :: . :  : . :. . : : . 
CCDS32 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK---ECKAELREHEHVVECISWAPESS
            240       250       260          270       280         

                               170       180       190       200   
pF1KB3 --------------------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD
                           .: :.: : :.:..  . .  .:  :: ::.. : .. : 
CCDS32 YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW--DVSTGMCLMTLVGHDNWVRGVLFH
     290       300       310       320         330       340       

           210       220       230       240       250       260   
pF1KB3 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL
        .:. . ::.::.:.:.:                                          
CCDS32 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW
       350       360       370       380       390       400       




339 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:20:53 2016 done: Fri Nov  4 02:20:53 2016
 Total Scan time:  2.680 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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