GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:10:12

Sequence gi568815596f:28652125_28899300 : 247176 bp : 42.44% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3379   3540  162  0  0   84  -16   175 0.405   4.50
 1.02 Intr +  12037  12146  110  0  2   18   59   110 0.251  -0.74
 1.03 Intr +  12300  12467  168  0  0   34   63   169 0.651   7.14
 1.04 Term +  14737  14929  193  1  1   84   32   172 0.250   7.11
 1.05 PlyA +  16013  16018    6                              -0.45

 2.06 PlyA -  18767  18762    6                               1.05
 2.05 Term -  20035  19799  237  1  0   48   49   105 0.309  -2.22
 2.04 Intr -  20311  20084  228  1  0   82  100    41 0.348   1.84
 2.03 Intr -  21314  21247   68  0  2  144   69    39 0.442   5.31
 2.02 Intr -  26562  26185  378  1  0   73   49   245 0.378  13.11
 2.01 Init -  30869  30542  328  2  1   46   37   199 0.852   8.13
 2.00 Prom -  34658  34619   40                              -1.35

 3.00 Prom +  42302  42341   40                              -7.45
 3.01 Init +  42986  43294  309  1  0   86  105    84 0.098   7.26
 3.02 Intr +  46431  46611  181  2  1   14   75   101 0.081  -0.08
 3.03 Intr +  56313  56453  141  1  0   81   98    45 0.619   4.20
 3.04 Intr +  57250  57425  176  2  2   45   83   148 0.191   8.74
 3.05 Intr +  76624  76692   69  0  0   77  113    17 0.015   1.56
 3.06 Intr +  99914 100316  403  1  1   32    2   367 0.003  15.58
 3.07 Intr + 124727 124858  132  0  0   52   68    92 0.655   3.30
 3.08 Intr + 126685 126915  231  2  0  109  101   129 0.997  13.12
 3.09 Intr + 129614 129718  105  0  0  110   59    42 0.869   2.77
 3.10 Intr + 131783 131854   72  0  0   77  111   106 0.999  10.26
 3.11 Intr + 136534 136685  152  2  2   90   80    70 0.889   5.36
 3.12 Intr + 141739 141873  135  0  0  104   80   149 0.999  15.54
 3.13 Term + 147075 147179  105  2  0   34   49   183 0.821   6.43
 3.14 PlyA + 149125 149130    6                               1.05

 4.02 PlyA - 150039 150034    6                               1.05
 4.01 Sngl - 159377 158703  675  2  0   56   45   308 0.999  19.23
 4.00 Prom - 163829 163790   40                              -4.35

 5.00 Prom + 165449 165488   40                              -2.45
 5.01 Init + 168637 168647   11  0  2   37   77    10 0.086  -5.25
 5.02 Intr + 177024 177195  172  0  1   53   94   104 0.378   6.52
 5.03 Intr + 188048 188345  298  1  1   50   86   215 0.440  13.02
 5.04 Term + 196186 196214   29  2  2   77   54    36 0.066  -3.64
 5.05 PlyA + 196525 196530    6                               1.05

 6.07 PlyA - 197721 197716    6                               1.05
 6.06 Term - 199164 198901  264  0  0   14   44   205 0.234   3.22
 6.05 Intr - 209184 208994  191  1  2   18   92   101 0.870   1.88
 6.04 Intr - 212995 212893  103  1  1   74  110    72 0.860   6.83
 6.03 Intr - 214268 214221   48  2  0   60   53    89 0.498   0.56
 6.02 Intr - 218286 217455  832  2  1   73   90   427 0.724  31.87
 6.01 Init - 223331 223186  146  2  2   35   80   184 0.895  11.94
 6.00 Prom - 232608 232569   40                              -7.15

 7.00 Prom + 237703 237742   40                              -9.25
 7.01 Init + 240593 240595    3  1  0  113   22     0 0.184  -4.05
 7.02 Intr + 242509 242799  291  0  0  113   98   347 0.874  34.61
 7.03 Term + 246038 246106   69  1  0  116   46    11 0.375  -3.34
 7.04 PlyA + 246547 246552    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:28652125_28899300|GENSCAN_predicted_peptide_1|210_aa
MAKLLPAPASSYTPHVLGTGLWRTQGGHILCSLEHNMFSAIQTRLQIAPSQQDVGTESCL
GYRYWNTVTAQYAELNCCKEHGCALVKHRPRRAGTQRKRETELSVFADEQRGARTQLRLL
VPRERIKLLTLKANESRLCSSVWEWPDNGTGAPALAVLPPTGPDTFHHPEPILDKSVASR
GCRSYRSSHTSIATDATCPPTVFTPSWSSP

>gi568815596f:28652125_28899300|GENSCAN_predicted_CDS_1|633_bp
atggccaagctgttgcctgcccccgcctcctcctatacacctcatgtactggggacaggc
ctatggaggacccaaggaggacacattctctgctccctggaacacaacatgttttcagcc
atccagacccgacttcaaatagcaccttctcagcaggatgtgggcacagaaagctgttta
ggttacaggtactggaatacagtgacggcacagtacgcggagctgaattgctgcaaggaa
catggctgtgctttggtcaagcacaggccgaggcgtgctggaacccagagaaagagagag
acagagctgtccgtctttgcagatgaacagaggggagccaggacacagctcaggctgctc
gtgcccagagaaagaattaagctgctgaccctgaaggcaaacgagagccggctgtgcagc
tctgtgtgggagtggccagacaatggaactggggctccggcattggcagtcctgcctcct
acaggccctgacacctttcaccatcctgagccaattctggataagagtgtggccagtcgt
ggatgccggagttaccgttccagccacacatctattgcaacagatgccacatgtccacca
actgtctttacaccatcctggtcatcaccctag

>gi568815596f:28652125_28899300|GENSCAN_predicted_peptide_2|412_aa
MPKLLAVSQWDLLSDQGRSGPRTPLTSSPVCPPLGAPHLGTASFKDPDATQGFGHPPPSN
TGIGDPVSFLSHQFLRKIGIDDSSFFKISVSLFHLLWALLHLESDFPQGGDRVLGAVGHA
AKVYGKLHPWAIVLPSLKANLFPFPRMACSAISIYCLAQHPVPRTPWRILRPQTMKCLIR
SKRKSTGVTGVHVDAIPQVTLKWLWLLLHVDRSQLAAVRILTMLPKRRGAESAPADHSHW
GKQAAMLWATLQRGPRSVLPLTGKNMECLVFCSCVSLVRMMASSFIHGELPLIKPSDLVR
LIHCHENSIGETAPMIQLSPPGPTLDMWGLLQFKIADFVQCIIHTTAYSNPGPTPAENFA
STVVDDLLFCNPDDLSLVPLSFDLSALLDTVDHPCTLTVCYVGLQETGLISC

>gi568815596f:28652125_28899300|GENSCAN_predicted_CDS_2|1239_bp
atgccgaagctcttagctgtttcacaatgggacctcctcagtgaccaaggccgctctggt
cctcggaccccattgacaagcagcccagtttgccctcctttgggggcccctcatctggga
acagcatcctttaaggaccctgatgctactcagggttttggtcatcctccaccatctaat
acgggaattggggaccctgtttcatttctgtctcatcagtttctcaggaagattggcata
gatgacagctcctttttcaaaatctctgtctctctgttccaccttctgtgggccctgctt
catcttgagtctgatttccctcagggtggtgaccgtgtccttggtgctgtgggccacgct
gccaaggtttatgggaagctacacccctgggctattgtgttgccctccctgaaggcaaat
ctctttcccttcccacgaatggcatgttccgccatctctatttattgtcttgcccagcat
ccagttcccagaactccctggagaattctcagacctcaaacaatgaagtgtctcattcgg
agtaaaaggaagagcacaggagtcaccggagtccacgtggacgcaattccacaagtgacc
ttgaaatggctgtggctgctccttcatgttgaccgaagccagctggcagcggtcaggatt
ctgaccatgttgccaaaaagaagaggggcagaaagtgctccagcagatcattcgcactgg
ggcaagcaagctgccatgttgtgggcaactttacagagaggcccacgtagcgtgctccca
cttacgggtaagaacatggagtgtttggttttctgttcctgtgttagtttggtgaggatg
atggcttccagcttcatccatggggaactcccacttataaaaccatcagatcttgtgaga
cttattcactgccacgagaacagtataggggaaaccgcccccatgattcaattatctcca
cctggccccacccttgacatgtggggattattacaattcaagattgctgactttgtgcag
tgcataatccacactactgcatatagcaaccctggccccactcctgctgaaaatttcgcc
tccactgttgttgatgacctgctgttttgcaaccctgatgatctttccttagttcccctt
tcctttgatctctcagctttacttgacactgtggaccacccctgcaccctcacagtttgt
tatgtgggattgcaggagacaggactgatatcttgctga

>gi568815596f:28652125_28899300|GENSCAN_predicted_peptide_3|736_aa
MGEKAGIQAGVHTTEGEISILRGICKDLVTVKACLCTKKKKKKKEEGREREGKREGKRER
EKERKPARRKLSFFPINQLSGAQVAKLQGKWNSLCSLKGALGEENEHEGLKYLCKTHNNS
VLEPRVRLGCAGPKAQFLSTVSRSSLLVPCVLENDGCGKQPQADFAKEQEPNKREKELSM
IVDSCIIMKRDQDLAGCSGSHYIPNALGGQVPALKLEIKRRAPKALAFHPKPPKAVGRIQ
NYVSPAGPGRSLSGERNRHREQRDGGGKVKKFADPWTRVSTSYPLGSFGFLKVRERRAVA
AASAAEKPLFPLLGRRVCADKMADGELNVDSLITRLLEGECAPGRGTEGGRAPPPTPASP
SAAGTRGDPFPAPRRVSGSAARRTNRGGGEEALGAGERPLGARSGEIGGEGAVPADPRGP
GPPAEGLRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDL
LRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINR
IYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSMEQIRRIMRP
TDVPDTGLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVE
DGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSEKKAKYQYGGLNS
GRPVTPPRTANPPKKR

>gi568815596f:28652125_28899300|GENSCAN_predicted_CDS_3|2211_bp
atgggggagaaagccggtattcaggcaggagtccacactacagagggtgaaatcagcatc
ctcagaggaatttgcaaggaccttgttacagtcaaggcttgcttatgtaccaaaaagaaa
aagaaaaaaaaagaagagggaagggagagagaaggaaagagagagggaaagagggagaga
gaaaaagaaaggaaacctgctcggagaaagttaagcttttttccaataaatcagttgtca
ggggctcaggttgctaagctacagggaaagtggaacagcctgtgctcgctaaaaggagct
ttgggggaggagaatgagcatgaagggctcaaatacttgtgtaagacacacaacaattca
gtgttggagccaagagtcagacttggatgtgctggacctaaagctcagtttctttccact
gtgtcacgttcatctctcttggtaccttgcgtccttgaaaatgatggatgtgggaagcag
ccacaggcagactttgcaaaggaacaagaacccaacaaaagggaaaaagaactctccatg
attgttgacagctgtataataatgaaaagagaccaggacctggccgggtgcagtggctca
cactatattcccaacgctttgggaggccaagtgccggccttaaaacttgaaatcaaacgc
agggctcccaaggcgctggcctttcatccaaaaccaccgaaggctgtgggcaggattcag
aattatgtttcaccagctggtccaggccgcagtttgtctggggagagaaacagacacagg
gaacaaagagatggaggtgggaaggtgaaaaagtttgctgacccatggactagagtatcc
acatcttatccactggggtcttttgggttcttgaaggtgagagaacgccgagccgtcgcc
gcagcctccgccgccgagaagcccttgttcccgctgctgggaaggagagtctgtgccgac
aagatggcggacggggagctgaacgtggacagcctcatcacccggctgctggagggtgag
tgcgcgcctggccgcgggacagagggaggtcgggcaccgccgccgacccctgcgtccccg
tctgccgccggaacgcgaggggacccctttcccgccccgagacgagtctctgggagcgcg
gcgcggcggacgaaccgaggagggggcgaggaggctctgggcgcgggggagcggcctctg
ggagcgcggtcaggggagatcgggggagagggggccgttcccgcggaccctcgggggcca
ggcccgccggccgaaggcttacgaggatgtcgtccaggaaagattgtgcagatgactgaa
gcagaagttcgaggcttatgtatcaagtctcgggagatctttctcagccagcctattctt
ttggaattggaagcaccgctgaaaatttgtggagatattcatggacaatatacagattta
ctgagattatttgaatatggaggtttcccaccagaagccaactatcttttcttaggagat
tatgtggacagaggaaagcagtctttggaaaccatttgtttgctattggcttataaaatc
aaatatccagagaacttctttctcttaagaggaaaccatgagtgtgctagcatcaatcgc
atttatggattctatgatgaatgcaaacgaagatttaatattaaattgtggaagaccttc
actgattgttttaactgtctgcctatagcagccattgtggatgagaagatcttctgttgt
catggaggattgtcaccagacctgcaatctatggagcagattcggagaattatgagacct
actgatgtccctgatacaggtttgctctgtgatttgctatggtctgatccagataaggat
gtgcaaggctggggagaaaatgatcgtggtgtttcctttacttttggagctgatgtagtc
agtaaatttctgaatcgtcatgatttagatttgatttgtcgagctcatcaggtggtggaa
gatggatatgaattttttgctaaacgacagttggtaaccttattttcagccccaaattac
tgtggcgagtttgataatgctggtggaatgatgagtgtggatgaaactttgatgtgttca
tttcagatattgaaaccatctgaaaagaaagctaaataccagtatggtggactgaattct
ggacgtcctgtcactccacctcgaacagctaatccgccgaagaaaaggtga

>gi568815596f:28652125_28899300|GENSCAN_predicted_peptide_4|224_aa
MSYGPGTETQQLRSQNSGADDLGDKKRCLMGHKEVGFIKKTPQISIPPTIKAAGTRGDGS
ACPGPSLRADGRASGAASGIGPARPSPGTFTRYAAGRRAAKAPTCAATASLARSLSPEPA
AGSACVVAAKAAEGAHGRRREDEAGALPSHLRRAVGSPASEPRDRAHSKLEIRLRGPFPG
ASTGTCGSPGLRGRGPGNGGQGSVAALLASDGCSSVASQQRYPL

>gi568815596f:28652125_28899300|GENSCAN_predicted_CDS_4|675_bp
atgagctacgggcctggtactgagacacagcagctcagatctcaaaattctggggcagac
gatcttggggacaaaaagaggtgtttaatgggacataaggaggtaggatttatcaaaaag
accccccaaatctccattcctcccacaataaaggcggcaggcacacgtggagacgggagc
gcctgcccagggccctccctccgagcagacggccgagcttcgggagcagcctccggtatc
ggccctgcccgtccttcccctggaaccttcacccgctacgccgccgggcggagggcggcc
aaagccccaacctgcgcggccactgcctccctcgccaggtccctcagcccagagcccgct
gcggggagcgcgtgtgtcgtcgccgcgaaggcagctgagggcgcccacgggaggcggcgt
gaggacgaggctggagcgctgccttctcatctaaggcgggcggtggggtcgccggcgagc
gaacccagggaccgggcacactcgaaactggagattcgcctgcgaggccccttcccgggg
gcgagcacaggtacctgcggaagcccggggctgcgcgggagagggccgggcaacggcggt
caaggctccgtcgcagcgctcctggcctcagacggttgctcgtcggtcgctagccagcag
cggtacccgctctaa

>gi568815596f:28652125_28899300|GENSCAN_predicted_peptide_5|169_aa
MSGRYLANTVEEDEEETKYEIFPWALGKNWRKLFPNFLKLRDQLWDRIDYRAIVSRRCCE
EVMAIAPTHYIWQRERSVHHSGAVRNYNRDEVQLPRGPSATPVDCSLCGKKRRYVRLGLS
SSSSLSSHTAGVTEKHSQDSYNSLSMDIIGDPSQAYTGSEGYTNSFTGI

>gi568815596f:28652125_28899300|GENSCAN_predicted_CDS_5|510_bp
atgagtggaaggtatctggctaatacagttgaagaagatgaagaagaaaccaagtacgaa
atttttccatgggctttagggaaaaactggagaaaattgttccctaatttcttaaagtta
agggaccagctctgggatagaattgactatagggctattgtaagcaggcgatgttgtgag
gaggttatggccattgcaccaacccattatatctggcaaagagaacgttctgttcatcac
agtggagctgtcagaaactacaacagagatgaagttcagctgccccggggacctagtgcc
acaccagtagattgttcactctgtggtaaaaaaagaagatatgttagactgggattgtct
tcatcatcatctttatccagtcatacagcaggggtgacagaaaaacattctcaggactca
tacaactcactgtcaatggacataataggtgatccttctcaagcttatactggttctgaa
ggatacaccaattccttcacgggcatatga

>gi568815596f:28652125_28899300|GENSCAN_predicted_peptide_6|527_aa
MFEKVLNFSEFGFAVSSNTAVNPRGEVLQNPDSSLAATGDKVKKQEKSRRSRGAVEPHAA
AEPSGCCAMRATGKEGVALGLRHSSATAPSRNTMLMAWCRGPVLLCLRQGLGTNSFLHGL
GQEPFEGARSLCCRSSPRDLRDGEREHEAAQRKAPGAESCPSLPLSISDIGTGCLSSLEN
LRLPTLREESSPRELEDSSGDQGRCGPTHQGSEDPSMLSQAQSATEVEERHVSPSCSTSR
ERPFQAGELILAETGEGETKFKKLFRLNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGK
QYMLRRPALEDYVVLMKRGTAITFPKSVEKLSSTKRVPSAQKDINMILSMMDINPGDTVL
EAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD
FIHKDISGATEDIKSLTFDAVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNGIL
AQKVESKINTDVQLDSQEKIGVKGELFQEDDHGELQFYFMHAVMNGE

>gi568815596f:28652125_28899300|GENSCAN_predicted_CDS_6|1584_bp
atgtttgagaaggttttaaacttctctgaatttggatttgcagtttctagtaacacagca
gtaaatcctagaggagaagttctacagaatccagattcaagtttagcagcaactggggat
aaagtgaaaaagcaggagaaaagcaggcgcagtcgcggagctgtagagccccacgcagct
gcagagccatcgggctgctgcgccatgcgcgcgactgggaaagaaggggtcgcgctaggc
ttgcgtcactcgtctgcgacggcgccttcgcgaaacactatgctaatggcatggtgccgc
ggtcctgtcttgctgtgcctgcggcaggggctcggaaccaattcattcctgcacggcctg
gggcaggagcccttcgagggagctcggtcactgtgttgcaggtcctcgcctagagacctg
cgagatggagaaagagagcacgaggcggcacaaaggaaagccccaggagcagagtcttgc
ccatctctccctctgagcatctcggacattgggactggatgtctttcgtcactggaaaac
ctcagactgccgacgctgcgggaagagtcatcccctcgagagctcgaggactcgagcgga
gaccagggccggtgcggtcccacacaccagggatccgaggatccttcgatgctctcgcag
gcccagtccgctaccgaggtcgaagagcgtcacgtctccccttcttgttcaacttccaga
gagagaccctttcaggctggggaactgattttagctgagactggggagggagaaacaaaa
tttaagaaattatttaggttgaacaacttcggactcttaaatagtaactggggggcagtc
ccgttcggcaagatcgtggggaagttccccggccagatactgaggagttccttcggtaag
cagtacatgctgaggaggccagccttggaagactatgtagtattgatgaaaagagggact
gccataacattcccaaagtctgtggaaaaactgtcttccacgaaacgggtccctagtgcc
caaaaggatattaatatgattctctcaatgatggatatcaacccaggtgatactgttttg
gaagctggctcaggctctggtggaatgagcttatttttatccaaagcagttggatcacaa
ggacgagtcataagttttgaggtacgaaaagaccaccatgatctggctaagaagaattac
aaacactggcgtgattcatggaaattaagtcatgtagaagagtggccagacaatgtggat
tttattcataaggacatttcaggagcaaccgaagacataaaatctttaacatttgacgca
gttattgaacttttagatggaattcgcacctgtgaacttgctctttcatgtgaaaagata
agcgaggtcattgtcagagattggttggtttgccttgcaaaacagaaaaatggaatttta
gctcaaaaagtagaatctaaaatcaacacagatgtacaactagattctcaagagaaaatt
ggagttaaaggtgagctgtttcaagaggatgaccatggtgagcttcagttttactttatg
catgcagtaatgaatggagaatga

>gi568815596f:28652125_28899300|GENSCAN_predicted_peptide_7|120_aa
MAPPRAGAPAHGRTRGCSGARAAMAAGGGGSCDPLAPAGVPCAFSPHSQAYFALASTDGH
LRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKTLSAIGYHSKCVYTALLSLQLR

>gi568815596f:28652125_28899300|GENSCAN_predicted_CDS_7|363_bp
atggctccgccccgcgccggtgcgcctgcgcacggacgaacacgtggctgcagcggggcc
agagcagcaatggcggcgggcggcggcggtagctgcgaccccctggcccctgctggggtc
ccttgcgccttctccccgcacagccaggcctacttcgctttggcctctaccgacggtcac
ttacgagtatgggagacggccaacaaccggctgcaccaggagtacgtgccttccgcgcac
ctcagtggtacctgcacctgtctggcctgggcgccagcgcggctgcaggccaagaccttg
tctgctattggctatcacagtaaatgtgtttatactgctttgctgtcactgcaattaaga
tga