GENSCAN 1.0	Date run:  4-Nov-116	Time: 02:02:13

Sequence gi568815596r:61378823_61633897 : 255075 bp : 42.80% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  38097  38383  287  2  2   78   24   312 0.067  20.40
 1.02 Intr +  46583  46672   90  2  0   77   39    94 0.036   1.59
 1.03 Term +  48528  48801  274  0  1   25   32   235 0.819   5.56
 1.04 PlyA +  49532  49537    6                               1.05

 2.00 Prom +  51598  51637   40                              -6.65
 2.01 Init +  54327  54457  131  2  2   60   80    66 0.312   2.67
 2.02 Intr +  60925  61109  185  1  2  144   54    26 0.315   3.31
 2.03 Intr +  65011  65131  121  2  1   17   42   139 0.009   0.83
 2.04 Term +  91745  91919  175  2  1   81   42   159 0.527   6.85
 2.05 PlyA +  95539  95544    6                               1.05

 3.19 PlyA -  96696  96691    6                               1.05
 3.18 Term - 100144  99998  147  1  0   93   38   161 0.966   8.52
 3.17 Intr - 102116 102088   29  0  2   83   86   -15 0.314  -5.28
 3.16 Intr - 104269 104135  135  2  0   89   99    26 0.705   3.42
 3.15 Intr - 105283 105115  169  1  1   68   66    88 0.797   3.20
 3.14 Intr - 107140 106946  195  1  0  119   93    90 0.993  11.29
 3.13 Intr - 109449 109343  107  1  2   72  115    27 0.979   2.81
 3.12 Intr - 109949 109766  184  2  1   61   78   143 0.999   9.04
 3.11 Intr - 111954 111820  135  0  0   66  106   102 0.999   9.64
 3.10 Intr - 113374 113213  162  1  0    9   91   124 0.735   4.05
 3.09 Intr - 113926 113745  182  2  2   67   91    94 0.873   6.27
 3.08 Intr - 114231 114093  139  0  1    2  106    97 0.960   2.02
 3.07 Intr - 116791 116633  159  1  0   85   94    74 0.988   6.96
 3.06 Intr - 118185 118057  129  0  0   55   90   118 0.985   8.67
 3.05 Intr - 121072 120887  186  1  0   74   29    88 0.554   0.46
 3.04 Intr - 123218 123174   45  2  0  109  115    46 0.985   7.09
 3.03 Intr - 123488 123427   62  0  2   67   94    34 0.591  -0.57
 3.02 Intr - 143861 143789   73  2  1   70   97    36 0.258   0.76
 3.01 Init - 147693 147598   96  0  0   59   80    95 0.259   6.16
 3.00 Prom - 148206 148167   40                              -8.35

 4.00 Prom + 148837 148876   40                              -6.45
 4.01 Init + 149569 149581   13  0  1   74   83    24 0.019  -0.92
 4.02 Term + 159273 159904  632  1  2  114   32   346 0.898  25.09
 4.03 PlyA + 160853 160858    6                               1.05

 5.00 Prom + 184774 184813   40                              -6.35
 5.01 Init + 211590 211716  127  2  1   71  -20   211 0.943   8.97
 5.02 Term + 213343 213488  146  2  2  109   49   132 0.622   8.49
 5.03 PlyA + 215819 215824    6                               1.05

 6.04 PlyA - 218848 218843    6                               1.05
 6.03 Term - 226817 226588  230  0  2   83   43    97 0.055   0.51
 6.02 Intr - 249146 249040  107  1  2   93   55    91 0.323   5.24
 6.01 Init - 251104 251097    8  1  2   96  105     0 0.394   3.05

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  38097  38387  291  2  0   78   39   317 0.862  21.20
S.002 Init +  47831  47928   98  1  2   75   72    77 0.812   4.63
S.003 Intr + 158050 158306  257  1  2   37   16   205 0.826   4.36


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:61378823_61633897|GENSCAN_predicted_peptide_1|216_aa
MNGDILDPTAIWDEPLLSHHIFKFIGIELGEAPLLPDVDLLAAGELELGPEQDLNHMRLV
LQLGMDGHNLANVNPGHSALGLSKGTSHACLDPTLGQQQKAWCLEPLGAEGGTTQQLQAT
ELSAVLKPSQEGQLQIRPDSEDYNKYLTLQCHSRTSTSINAIQENMTSPNELNKASGTNP
GETEICDLSDKEFKIAVLRKLKEIQDNTEGIQNSIR

>gi568815596r:61378823_61633897|GENSCAN_predicted_CDS_1|651_bp
atgaatggcgacatacttgaccccacagccatctgggatgagccgcttctcagccaccat
atcttcaaattcatcggcattgaacttggtgaagccccacttcttccagatgtggatctt
ctggcagccggggaacttgaacttggccctgagcaggacctcaatcacatgcgccttgtt
ctgcagcttggtatggatggacataacttggccaatgtgaaccctggccacagtgccctg
gggctttccaaaggcacctcacatgcctgtttggaccctacactgggccagcagcaaaag
gcctggtgcctagagcctctcggtgctgagggagggacaacacagcaactgcaagccact
gaactcagtgctgtcctaaagccttcccaagaaggacagcttcaaataaggccagacagt
gaagactacaataaatacctaactcttcaatgccactcaagaacatctactagcatcaac
gccatccaggaaaacatgacctcaccaaatgaactaaataaggcatcagggaccaatcct
ggagaaacagagatatgtgacctttcagataaggaattcaaaatagccgtgttgaggaaa
ctcaaagaaattcaagataacacagaaggaatacagaattctatcagataa

>gi568815596r:61378823_61633897|GENSCAN_predicted_peptide_2|203_aa
METHLLVTKSRKAVWKHPASAAPSPLTQMGFACSQQGLPDAGKKEAGGCGQRVGLETCSA
IPCHYVGHTQLGGDLMMCGPERCLGVDSVDGCTVPLGQGLLLGQQDSPSVTNVPLTLVSD
VDNGGGFVCGESGGIPEISAPYAQFWPRQPGEARELREDPKPCTPTGRYRGYLLSFNTST
RSAQFSHIVRPPPPPSPASDHTD

>gi568815596r:61378823_61633897|GENSCAN_predicted_CDS_2|612_bp
atggagacacacctgttggtgacaaagtccaggaaggcagtatggaagcatccagcctct
gcagccccatctcccctcacccagatgggatttgcctgcagtcagcagggacttcctgat
gcagggaaaaaggaggcaggaggctgtgggcaaagggtgggcctggagacctgctcagcc
ataccctgtcactatgtgggtcacacacagctgggtggagacctcatgatgtgtggccca
gagaggtgtctgggtgtggattctgtggatggctgcactgtgccattaggacagggactg
ctgctgggccaacaggattcaccaagtgtaacaaatgtaccactcactctggtgtcagat
gttgataatggaggaggcttcgtgtgtggggagtcaggtggcataccggaaatatctgca
ccttatgctcaattttggccgcggcagcccggggaggccagagagctgcgcgaggacccc
aaaccgtgcaccccgacaggccgctaccgcggctacttactttcatttaacacctccacc
aggtctgcgcagttctcgcacatcgttcggccgccgccccccccctcccccgcttcggat
cacactgactga

>gi568815596r:61378823_61633897|GENSCAN_predicted_peptide_3|777_aa
MAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKK
YVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLC
QNNMVILKLLSEEVFDFSSGQITQVKSKHLKDRQFLNVPMFRNVSLKCLTEIAGVSVSQY
EEQFVTLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHDQLIEK
RLNLRETLMEVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT
HLDYVDTERIMTEKLHNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKTHD
GVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVG
YMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRA
CKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKL
ISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAE
IPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSI
IWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAG
SLKCIMEYWEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGIFNPHEIPEEMCD

>gi568815596r:61378823_61633897|GENSCAN_predicted_CDS_3|2334_bp
atggctcaagaagtactgacacatttaaaggagcatcctgatgcttggacaagagtcgac
acaattttggaattttctcagaatatgaatacgaaatactatggactacaaattttggaa
aatgtgataaaaacaaggtggaagattcttccaaggaaccagtgcgaaggaataaaaaaa
tacgttgttggcctcattatcaagacgtcatctgacccaacttgtgtagagaaagaaaag
gtgtatatcggaaaattaaatatgatccttgttcagatactgaaacaagaatggcccaaa
cattggccaacttttatcagtgatattgttggagcaagtaggaccagcgaaagtctctgt
caaaataatatggtgattcttaaactcttgagtgaagaagtatttgatttctctagtgga
cagataacccaagtcaaatctaagcatttaaaagacaggcaattcctgaatgttccaatg
tttcgaaatgtctctctgaagtgcctcactgagattgctggtgtgagtgtaagccaatat
gaagaacaatttgtaacactatttactctgacaatgatgcaactaaagcagatgcttcct
ttaaataccaatattcgacttgcgtactcaaatggaaaagatgatgaacagaacttcatt
caaaatctcagtttgtttctctgcacctttcttaaggaacatgatcaacttatagaaaaa
agattaaatctcagggaaactcttatggaggtccgtttattaatggttagtcgaatggct
aaaccagaggaagtattggttgtagagaatgatcaaggagaagttgtgagagaattcatg
aaggatacagattccataaatttgtataagaatatgagggaaacattggtttatcttact
catctggattatgtagatacagaaagaataatgacagagaagcttcacaatcaagtgaat
ggtacagagtggtcatggaaaaatttgaatacattgtgttgggcaataggctccattagt
ggagcaatgcatgaagaggacgaaaaacgatttcttgttactgttataaagacccatgat
ggagtccaggatatggcttgtgatactttcattaaaatagcccaaaaatgccgcaggcat
ttcgttcaggttcaggttggagaagtgatgccatttattgatgaaattttgaacaacatt
aacactattatttgtgatcttcagcctcaacaggttcatacgttttatgaagctgtgggg
tacatgattggtgcacaaacagatcaaacagtacaagaacacttgatagaaaagtacatg
ttactccctaatcaagtgtgggatagtataatccagcaggcaaccaaaaatgtggatata
ctgaaagatcctgaaacagtcaagcagcttggtagcattttgaaaacaaatgtgagagcc
tgcaaagctgttggacacccctttgtaattcagcttggaagaatttatttagatatgctt
aatgtatacaagtgcctcagtgaaaatatttctgcagctatccaagctaatggtgaaatg
gttacaaagcaaccattgattagaagtatgcgaactgtaaaaagggaaactttaaagtta
atatctggttgggtgagccgatccaatgatccacagatggtcgctgaaaattttgttccc
cctctgttggatgcagttctcattgattatcagagaaatgtcccagctgctagagaacca
gaagtgcttagtactatggccataattgtcaacaagttagggggacatataacagctgaa
atacctcaaatatttgatgctgtttttgaatgcacattgaatatgataaataaggacttt
gaagaatatcctgaacatagaacgaactttttcttactacttcaggctgtcaattctcat
tgtttcccagcattccttgctattccacctacacagtttaaacttgttttggattccatc
atttgggctttcaaacatactatgaggaatgtcgcagatacgggcttacagatacttttt
acactcttacaaaatgttgcacaagaagaagctgcagctcagagtttttatcaaacttat
ttttgtgatattctccagcatatcttttctgttgtgacagacacttcacatactgctggt
agtcttaaatgtataatggaatattgggaatttgcaggtgaagacacttctgatttgttt
ttggaagagagagaaatagccctacggcaggctgatgaagagaaacataaacgtcaaatg
tctgtccctggcatctttaatccacatgagattccagaagaaatgtgtgattaa

>gi568815596r:61378823_61633897|GENSCAN_predicted_peptide_4|214_aa
MGGRATGGSPLPLWVVARTAAAKTGTGTAAGAVATVALADAVAPAAPAAAAAAASPPPPS
ASNSEPVETGSDWEIPSRLSFQPMAPRSVWNLGLRPQPALLLVSSSYSRAMSLSLIGPSA
SQSRLTAPHEPAASAPTSFQQRFARRVGEGKWGGSKGKRRGVEEEEVGRRAGMSRKESEG
KPRGGFVRTSCQSRAARPRALDFPSPCGPLPPGA

>gi568815596r:61378823_61633897|GENSCAN_predicted_CDS_4|645_bp
atgggaggccgagcgactggtggttcccccctccccctctgggtggttgcacggactgca
gcagcaaagactggaacaggcaccgccgccggggctgtagctactgttgctcttgctgat
gctgtagctcccgctgctcctgccgcggccgctgcagccgcttctccccctcctcctagt
gcctcaaactcggaaccggttgaaaccggttcagactgggagattccatctcggttgagt
tttcagcccatggcgccgcggagcgtttggaacctgggcctccgcccccagcccgccctc
ctattggtcagttccagctacagccgcgccatgagcctatctctcattggcccgagcgcc
agtcaatcccgcctcacggctccacacgagcccgccgcttcggcccctacctcttttcag
cagcgatttgcccgcagagtgggggaggggaagtggggagggtcgaaaggcaagaggaga
ggggtggaggaggaggaggtgggacgaagagcagggatgagtagaaaagagagcgaagga
aagccgcgtggaggattcgttcgaacgagctgtcaatcaagagcagcccgccctcgagct
ctcgacttcccttccccctgcggccctctccctcccggtgcctag

>gi568815596r:61378823_61633897|GENSCAN_predicted_peptide_5|90_aa
MGIIKEEEEKEEKEERRRKKKEEEEEEEEEEEKLAEHDDVCSTRAQNWTENEIDKLTEVG
FRRWVITNSSELKEHVLTQCKEAKNLDERL

>gi568815596r:61378823_61633897|GENSCAN_predicted_CDS_5|273_bp
atggggataataaaagaggaagaagaaaaggaagagaaagaggaaagaagaaggaagaag
aaggaagaagaagaagaggaagaagaggaagaagaaaaattagctgagcatgatgatgta
tgctctacaagggcacaaaactggaccgagaatgagattgacaaattgacagaagtaggc
ttcagaaggtgggtaataacaaactcctctgagctaaaggagcatgttctaacccaatgc
aaggaagctaagaaccttgatgaaaggttatag

>gi568815596r:61378823_61633897|GENSCAN_predicted_peptide_6|114_aa
MPWELLHSEVGLKALALVPAVFMEFQICAELPASGGVGVYVLPKQAPELMFFTSKRDPWI
ANPPICGMGNDARIPSFNRTQRQRGERGTVAPRHWGMTQTNLVNSAEYSVNPYI

>gi568815596r:61378823_61633897|GENSCAN_predicted_CDS_6|345_bp
atgccctgggagttgctgcattccgaagtaggactgaaggcgcttgccctggtcccagct
gttttcatggagttccaaatatgtgctgaacttcctgccagtggaggggtaggagtatat
gtgctgccaaagcaagcaccagagctgatgttttttacgtcaaaaagagatccatggatt
gcaaacccacccatctgtggcatggggaatgatgccagaataccctcctttaacagaacc
caaaggcaaagaggtgagagaggaacggtggccccacgtcactggggaatgacacagacc
aatttagtcaattcagcagaatattcagtcaatccatatatctga