Result of FASTA (ccds) for pF1KA1694
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1694, 773 aa
  1>>>pF1KA1694 773 - 773 aa - 773 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9089+/-0.000922; mu= 16.8460+/- 0.055
 mean_var=69.8342+/-13.939, 0's: 0 Z-trim(105.8): 37  B-trim: 0 in 0/50
 Lambda= 0.153476
 statistics sampled from 8594 (8608) to 8594 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.264), width:  16
 Scan time:  3.670

The best scores are:                                      opt bits E(32554)
CCDS54044.1 CMIP gene_id:80790|Hs108|chr16         ( 773) 5148 1149.4       0
CCDS54045.1 CMIP gene_id:80790|Hs108|chr16         ( 679) 4478 1001.0       0


>>CCDS54044.1 CMIP gene_id:80790|Hs108|chr16              (773 aa)
 initn: 5148 init1: 5148 opt: 5148  Z-score: 6153.5  bits: 1149.4 E(32554):    0
Smith-Waterman score: 5148; 100.0% identity (100.0% similar) in 773 aa overlap (1-773:1-773)

               10        20        30        40        50        60
pF1KA1 MDVTSSSGGGGDPRQIEETKPLLGGDVSAPEGTKMGAVPCRRALLLCNGMRYKLLQEGDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MDVTSSSGGGGDPRQIEETKPLLGGDVSAPEGTKMGAVPCRRALLLCNGMRYKLLQEGDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 QVCVIRHPRTFLSKILTSKFLRRWEPHHLTLADNSLASATPTGYMENSVSYSAIEDVQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QVCVIRHPRTFLSKILTSKFLRRWEPHHLTLADNSLASATPTGYMENSVSYSAIEDVQLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 SWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 EIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 DLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 MEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 QPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 GNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 PFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 ELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNND
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 TQLQIISTLESTDVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TQLQIISTLESTDVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 FGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCE
              670       680       690       700       710       720

              730       740       750       760       770   
pF1KA1 TPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW
              730       740       750       760       770   

>>CCDS54045.1 CMIP gene_id:80790|Hs108|chr16              (679 aa)
 initn: 4478 init1: 4478 opt: 4478  Z-score: 5352.7  bits: 1001.0 E(32554):    0
Smith-Waterman score: 4478; 99.7% identity (99.9% similar) in 676 aa overlap (98-773:4-679)

        70        80        90       100       110       120       
pF1KA1 PRTFLSKILTSKFLRRWEPHHLTLADNSLASATPTGYMENSVSYSAIEDVQLLSWENAPK
                                     .: :::::::::::::::::::::::::::
CCDS54                            MGQAAEPTGYMENSVSYSAIEDVQLLSWENAPK
                                          10        20        30   

       130       140       150       160       170       180       
pF1KA1 YCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVD
            40        50        60        70        80        90   

       190       200       210       220       230       240       
pF1KA1 MALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPPDLCEFFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPPDLCEFFC
           100       110       120       130       140       150   

       250       260       270       280       290       300       
pF1KA1 KHCRERPRSMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAGMEVVKKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KHCRERPRSMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAGMEVVKKF
           160       170       180       190       200       210   

       310       320       330       340       350       360       
pF1KA1 IQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKP
           220       230       240       250       260       270   

       370       380       390       400       410       420       
pF1KA1 TLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASAGNDSEPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASAGNDSEPN
           280       290       300       310       320       330   

       430       440       450       460       470       480       
pF1KA1 LIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPIPFPKEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPIPFPKEAL
           340       350       360       370       380       390   

       490       500       510       520       530       540       
pF1KA1 AHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDGELFASMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDGELFASMV
           400       410       420       430       440       450   

       550       560       570       580       590       600       
pF1KA1 HILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNNDTQLQIIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNNDTQLQIIS
           460       470       480       490       500       510   

       610       620       630       640       650       660       
pF1KA1 TLESTDVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGSFGNLENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TLESTDVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGSFGNLENL
           520       530       540       550       560       570   

       670       680       690       700       710       720       
pF1KA1 SLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAG
           580       590       600       610       620       630   

       730       740       750       760       770   
pF1KA1 LLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW
           640       650       660       670         




773 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:44:21 2016 done: Fri Nov  4 01:44:22 2016
 Total Scan time:  3.670 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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