Result of FASTA (ccds) for pF1KA1017
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1017, 1015 aa
  1>>>pF1KA1017 1015 - 1015 aa - 1015 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5345+/-0.000933; mu= 15.5336+/- 0.056
 mean_var=91.4550+/-18.422, 0's: 0 Z-trim(107.4): 21  B-trim: 177 in 1/49
 Lambda= 0.134113
 statistics sampled from 9557 (9572) to 9557 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.294), width:  16
 Scan time:  3.680

The best scores are:                                      opt bits E(32554)
CCDS7837.1 HPS5 gene_id:11234|Hs108|chr11          (1015) 6767 1320.1       0
CCDS7836.1 HPS5 gene_id:11234|Hs108|chr11          (1129) 6767 1320.1       0
CCDS58337.1 TECPR2 gene_id:9895|Hs108|chr14        (1267)  318 72.4 6.8e-12
CCDS32162.1 TECPR2 gene_id:9895|Hs108|chr14        (1411)  318 72.4 7.5e-12


>>CCDS7837.1 HPS5 gene_id:11234|Hs108|chr11               (1015 aa)
 initn: 6767 init1: 6767 opt: 6767  Z-score: 7072.1  bits: 1320.1 E(32554):    0
Smith-Waterman score: 6767; 99.9% identity (100.0% similar) in 1015 aa overlap (1-1015:1-1015)

               10        20        30        40        50        60
pF1KA1 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MYVSSEHKGRRVTALCWDTAILRVFVGDHAGKVSAIKLNTSKQAKAAAAFVMFPVQTITT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VDSCVVQLDYLDGRLLISSLTRSFLCDTEREKFWKIGNKERDGEYGACFFPGRCSGGQQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LIYCARPGSRMWEVNFDGEVISTHQFKKLLSLPPLPVITLRSEPQYDHTAGSSQSLSFPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LLHLSEHCVLTWTERGIYIFIPQNVQVLLWSEVKDIQDVAVCRNELFCLHLNGKVSHLSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ISVERCVERLLRRGLWNLAARTCCLFQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 SQMEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SQLEELILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LSEDERFKEFTSQQEEDLPDQCCGSHGNEDNVSHAPVMFETDKNETFLPFGIPLPFRSPS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PLVSLQAVKESVSSFVRKTTEKIGTLHTSPDLKVRPELRGDEQSCEEDVSSDTCPKEEDT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EEEKEVTSPPPEEDRFQELKVATAEAMTKLQDPLVLFESESLRMVLQEWLSHLEKTFAMK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DFSGVSDTDNSSMKLNQDVLLVNESKKGILDEDNEKEKRDSLGNEESVDKTACECVRSPR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ESLDDLFQICSPCAIASGLRNDLAELTTLCLELNVLNSKIKSTSGHVDHTLQQYSPEILA
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 CQFLKKYFFLLNLKRAKESIKLSYSNSPSVWDTFIEGLKEMASSNPVYMEMEKGDLPTRL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KLLDDEVPFDSPLLVVYATRLYEKFGESALRSLIKFFPSILPSDIIQLCHHHPAEFLAYL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DSLVKSRPEDQRSSFLESLLQPESLRLDWLLLAVSLDAPPSTSTMDDEGYPRPHSHLLSW
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GYSQLILHLIKLPADFITKEKMTDICRSCGFWPGYLILCLELERRREAFTNIVYLNDMSL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MEGDNGWIPETVEEWKLLLHLIQSKSTRPAPQESLNGSLSDGPSPINVENVALLLAKAMG
              910       920       930       940       950       960

              970       980       990      1000      1010     
pF1KA1 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PDRAWSLLQECGLALELSEKFTRTCDILRIAEKRQRALIQSMLEKCDRFLWSQQA
              970       980       990      1000      1010     

>>CCDS7836.1 HPS5 gene_id:11234|Hs108|chr11               (1129 aa)
 initn: 6767 init1: 6767 opt: 6767  Z-score: 7071.3  bits: 1320.1 E(32554):    0
Smith-Waterman score: 6767; 99.9% identity (100.0% similar) in 1015 aa overlap (1-1015:115-1129)

                                             10        20        30
pF1KA1                               MYVSSEHKGRRVTALCWDTAILRVFVGDHA
                                     ::::::::::::::::::::::::::::::
CCDS78 HDDDYVAVATSQGLVVVWELNQERRGKPEQMYVSSEHKGRRVTALCWDTAILRVFVGDHA
           90       100       110       120       130       140    

               40        50        60        70        80        90
pF1KA1 GKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GKVSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTER
          150       160       170       180       190       200    

              100       110       120       130       140       150
pF1KA1 EKFWKIGNKERDGEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EKFWKIGNKERDGEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLL
          210       220       230       240       250       260    

              160       170       180       190       200       210
pF1KA1 SLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLSEHCVLTWTERGIYIFIPQNVQVLLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLSEHCVLTWTERGIYIFIPQNVQVLLW
          270       280       290       300       310       320    

              220       230       240       250       260       270
pF1KA1 SEVKDIQDVAVCRNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCLFQNSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SEVKDIQDVAVCRNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCLFQNSV
          330       340       350       360       370       380    

              280       290       300       310       320       330
pF1KA1 IASRARKTLTADKLEHLKSQLDHGTYNDLISQMEELILKFEPLDSACSSRRSSISSHESF
       ::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::
CCDS78 IASRARKTLTADKLEHLKSQLDHGTYNDLISQLEELILKFEPLDSACSSRRSSISSHESF
          390       400       410       420       430       440    

              340       350       360       370       380       390
pF1KA1 SILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDERFKEFTSQQEEDLPDQCCGSHGNED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SILDSGIYRIISSRRGSQSDEDSCSLHSQTLSEDERFKEFTSQQEEDLPDQCCGSHGNED
          450       460       470       480       490       500    

              400       410       420       430       440       450
pF1KA1 NVSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NVSHAPVMFETDKNETFLPFGIPLPFRSPSPLVSLQAVKESVSSFVRKTTEKIGTLHTSP
          510       520       530       540       550       560    

              460       470       480       490       500       510
pF1KA1 DLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DLKVRPELRGDEQSCEEDVSSDTCPKEEDTEEEKEVTSPPPEEDRFQELKVATAEAMTKL
          570       580       590       600       610       620    

              520       530       540       550       560       570
pF1KA1 QDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 QDPLVLFESESLRMVLQEWLSHLEKTFAMKDFSGVSDTDNSSMKLNQDVLLVNESKKGIL
          630       640       650       660       670       680    

              580       590       600       610       620       630
pF1KA1 DEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQICSPCAIASGLRNDLAELTTLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DEDNEKEKRDSLGNEESVDKTACECVRSPRESLDDLFQICSPCAIASGLRNDLAELTTLC
          690       700       710       720       730       740    

              640       650       660       670       680       690
pF1KA1 LELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKKYFFLLNLKRAKESIKLSYSNSPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LELNVLNSKIKSTSGHVDHTLQQYSPEILACQFLKKYFFLLNLKRAKESIKLSYSNSPSV
          750       760       770       780       790       800    

              700       710       720       730       740       750
pF1KA1 WDTFIEGLKEMASSNPVYMEMEKGDLPTRLKLLDDEVPFDSPLLVVYATRLYEKFGESAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 WDTFIEGLKEMASSNPVYMEMEKGDLPTRLKLLDDEVPFDSPLLVVYATRLYEKFGESAL
          810       820       830       840       850       860    

              760       770       780       790       800       810
pF1KA1 RSLIKFFPSILPSDIIQLCHHHPAEFLAYLDSLVKSRPEDQRSSFLESLLQPESLRLDWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RSLIKFFPSILPSDIIQLCHHHPAEFLAYLDSLVKSRPEDQRSSFLESLLQPESLRLDWL
          870       880       890       900       910       920    

              820       830       840       850       860       870
pF1KA1 LLAVSLDAPPSTSTMDDEGYPRPHSHLLSWGYSQLILHLIKLPADFITKEKMTDICRSCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LLAVSLDAPPSTSTMDDEGYPRPHSHLLSWGYSQLILHLIKLPADFITKEKMTDICRSCG
          930       940       950       960       970       980    

              880       890       900       910       920       930
pF1KA1 FWPGYLILCLELERRREAFTNIVYLNDMSLMEGDNGWIPETVEEWKLLLHLIQSKSTRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 FWPGYLILCLELERRREAFTNIVYLNDMSLMEGDNGWIPETVEEWKLLLHLIQSKSTRPA
          990      1000      1010      1020      1030      1040    

              940       950       960       970       980       990
pF1KA1 PQESLNGSLSDGPSPINVENVALLLAKAMGPDRAWSLLQECGLALELSEKFTRTCDILRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 PQESLNGSLSDGPSPINVENVALLLAKAMGPDRAWSLLQECGLALELSEKFTRTCDILRI
         1050      1060      1070      1080      1090      1100    

             1000      1010     
pF1KA1 AEKRQRALIQSMLEKCDRFLWSQQA
       :::::::::::::::::::::::::
CCDS78 AEKRQRALIQSMLEKCDRFLWSQQA
         1110      1120         

>>CCDS58337.1 TECPR2 gene_id:9895|Hs108|chr14             (1267 aa)
 initn: 246 init1:  94 opt: 318  Z-score: 327.0  bits: 72.4 E(32554): 6.8e-12
Smith-Waterman score: 324; 30.4% identity (57.7% similar) in 260 aa overlap (3-255:122-366)

                                           10        20        30  
pF1KA1                             MYVSSEHKGRRVTALCWDTAILRVFVGDHAGK
                                     :.. ::.  .::: :.   ...: ::  ::
CCDS58 VAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIHKNS-ITALAWSPNGMKLFSGDDKGK
             100       110       120        130       140       150

             40        50        60        70        80        90  
pF1KA1 VSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREK
       .   .:. ..         .   : .    : .::::: .  ::.:.: ::.:  ::...
CCDS58 IVYSSLDLDQG--------LCNSQLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKS
              160               170       180       190       200  

            100         110       120       130       140       150
pF1KA1 FWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLL
         .::.. :   :..::::.:: :. ..  : : .::: :.:...  : : .:  .:  .
CCDS58 VRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YASRPGLRLWKADVHGTVQATFILKDAF
            210       220       230        240       250       260 

              160       170       180           190       200      
pF1KA1 SLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS----EHCVLTWTERGIYIFIPQNVQ
       .    :   .. .:. .   ..: ::   .:  .:    :  ::.:.: .::..   :  
CCDS58 AGGVKP---FELHPRLESPNSGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQA
                270       280       290       300       310        

        210        220       230       240       250       260     
pF1KA1 VLLWSEVK-DIQDVAVCRNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCL
       ..   : . :: .:.  .::.: :. . .. ..:  :  . .   .: ::          
CCDS58 TVAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS--SRPEGLTSTVRDGLEMSGCSERVH
      320       330       340       350         360       370      

         270       280       290       300       310       320     
pF1KA1 FQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLISQMEELILKFEPLDSACSSRRSSIS
                                                                   
CCDS58 VQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNSTDSGSGLLPPGLQATPELGKG
        380       390       400       410       420       430      

>>CCDS32162.1 TECPR2 gene_id:9895|Hs108|chr14             (1411 aa)
 initn: 246 init1:  94 opt: 318  Z-score: 326.3  bits: 72.4 E(32554): 7.5e-12
Smith-Waterman score: 324; 30.4% identity (57.7% similar) in 260 aa overlap (3-255:122-366)

                                           10        20        30  
pF1KA1                             MYVSSEHKGRRVTALCWDTAILRVFVGDHAGK
                                     :.. ::.  .::: :.   ...: ::  ::
CCDS32 VAAGTASGRVAVFQLVSSLPGRNKQLRRFDVTGIHKNS-ITALAWSPNGMKLFSGDDKGK
             100       110       120        130       140       150

             40        50        60        70        80        90  
pF1KA1 VSAIKLNTSKQAKAAAAFVMFPVQTITTVDSCVVQLDYLDGRLLISSLTRSFLCDTEREK
       .   .:. ..         .   : .    : .::::: .  ::.:.: ::.:  ::...
CCDS32 IVYSSLDLDQG--------LCNSQLVLEEPSSIVQLDYSQKVLLVSTLQRSLLFYTEEKS
              160               170       180       190       200  

            100         110       120       130       140       150
pF1KA1 FWKIGNKERD--GEYGACFFPGRCSGGQQPLIYCARPGSRMWEVNFDGEVISTHQFKKLL
         .::.. :   :..::::.:: :. ..  : : .::: :.:...  : : .:  .:  .
CCDS32 VRQIGTQPRKSTGKFGACFIPGLCKQSDLTL-YASRPGLRLWKADVHGTVQATFILKDAF
            210       220       230        240       250       260 

              160       170       180           190       200      
pF1KA1 SLPPLPVITLRSEPQYDHTAGSSQSLSFPKLLHLS----EHCVLTWTERGIYIFIPQNVQ
       .    :   .. .:. .   ..: ::   .:  .:    :  ::.:.: .::..   :  
CCDS32 AGGVKP---FELHPRLESPNSGSCSLPERHLGLVSCFFQEGWVLSWNEYSIYLLDTVNQA
                270       280       290       300       310        

        210        220       230       240       250       260     
pF1KA1 VLLWSEVK-DIQDVAVCRNELFCLHLNGKVSHLSLISVERCVERLLRRGLWNLAARTCCL
       ..   : . :: .:.  .::.: :. . .. ..:  :  . .   .: ::          
CCDS32 TVAGLEGSGDIVSVSCTENEIFFLKGDRNIIRIS--SRPEGLTSTVRDGLEMSGCSERVH
      320       330       340       350         360       370      

         270       280       290       300       310       320     
pF1KA1 FQNSVIASRARKTLTADKLEHLKSQLDHGTYNDLISQMEELILKFEPLDSACSSRRSSIS
                                                                   
CCDS32 VQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNSTDSGSGLLPPGLQATPELGKG
        380       390       400       410       420       430      




1015 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:17:42 2016 done: Fri Nov  4 01:17:42 2016
 Total Scan time:  3.680 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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