Result of FASTA (omim) for pF1KA0840
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0840, 491 aa
  1>>>pF1KA0840 491 - 491 aa - 491 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1246+/-0.000376; mu= 9.9538+/- 0.024
 mean_var=128.1072+/-26.033, 0's: 0 Z-trim(116.2): 127  B-trim: 0 in 0/54
 Lambda= 0.113315
 statistics sampled from 27104 (27250) to 27104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.32), width:  16
 Scan time:  7.470

The best scores are:                                      opt bits E(85289)
NP_036436 (OMIM: 605656) F-box/LRR-repeat protein  ( 491) 3321 554.4 2.6e-157
XP_016864751 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 486) 3239 541.0 2.8e-153
NP_001265246 (OMIM: 605656) F-box/LRR-repeat prote ( 444) 3028 506.5 6.3e-143
XP_011512300 (OMIM: 605656) PREDICTED: F-box/LRR-r ( 444) 3028 506.5 6.3e-143
NP_036289 (OMIM: 605652) F-box/LRR-repeat protein  ( 423)  527 97.6 7.2e-20
NP_116264 (OMIM: 609086) F-box/LRR-repeat protein  ( 436)  520 96.5 1.6e-19
XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 473)  520 96.5 1.8e-19
XP_005265071 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 454)  469 88.2 5.5e-17
XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318)  434 82.3 2.2e-15
XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 318)  434 82.3 2.2e-15
NP_001171835 (OMIM: 609086) F-box/LRR-repeat prote ( 404)  421 80.3 1.1e-14
XP_005257804 (OMIM: 609086) PREDICTED: F-box/LRR-r ( 441)  421 80.3 1.2e-14
XP_016861582 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349)  376 72.9 1.7e-12
XP_011531861 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349)  376 72.9 1.7e-12
XP_005265072 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349)  376 72.9 1.7e-12
XP_016861581 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349)  376 72.9 1.7e-12
XP_005265073 (OMIM: 605652) PREDICTED: F-box/LRR-r ( 349)  376 72.9 1.7e-12
XP_011514234 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 639)  348 68.5 6.5e-11
NP_001104508 (OMIM: 609080) F-box/LRR-repeat prote ( 690)  348 68.5 6.9e-11
XP_005250265 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780)  348 68.5 7.6e-11
NP_001165184 (OMIM: 605652) F-box/LRR-repeat prote ( 355)  330 65.4 3.1e-10
XP_006715961 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 584)  332 65.8 3.7e-10
XP_016867342 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735)  332 65.9 4.5e-10
XP_005250266 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735)  332 65.9 4.5e-10
NP_659469 (OMIM: 609080) F-box/LRR-repeat protein  ( 735)  332 65.9 4.5e-10
XP_011514232 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 735)  332 65.9 4.5e-10
XP_016867341 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 780)  332 65.9 4.7e-10
XP_005250264 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 792)  332 65.9 4.7e-10
XP_016867339 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 822)  332 65.9 4.9e-10
XP_005250262 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 825)  332 65.9 4.9e-10
NP_001274079 (OMIM: 609080) F-box/LRR-repeat prote ( 707)  328 65.2 6.8e-10
XP_011514230 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 797)  328 65.3 7.5e-10
XP_016867340 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 809)  328 65.3 7.6e-10
XP_011514231 (OMIM: 609080) PREDICTED: F-box/LRR-r ( 783)  323 64.4 1.3e-09
XP_016866217 (OMIM: 605654,615471) PREDICTED: F-bo ( 379)  315 62.9 1.8e-09
XP_016866215 (OMIM: 605654,615471) PREDICTED: F-bo ( 621)  315 63.1 2.7e-09
NP_036292 (OMIM: 605654,615471) F-box/LRR-repeat p ( 621)  315 63.1 2.7e-09
NP_001265645 (OMIM: 605654,615471) F-box/LRR-repea ( 621)  315 63.1 2.7e-09
XP_016865218 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 567)  304 61.3 8.7e-09
XP_011541880 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 582)  304 61.3 8.8e-09
XP_011541879 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 589)  304 61.3 8.9e-09
XP_011541878 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 610)  304 61.3 9.2e-09
XP_011541877 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 618)  304 61.3 9.3e-09
XP_011541876 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 621)  304 61.3 9.3e-09
NP_001156787 (OMIM: 609083) F-box/LRR-repeat prote ( 701)  304 61.3   1e-08
XP_005272105 (OMIM: 609083) PREDICTED: F-box/LRR-r ( 712)  304 61.3   1e-08
NP_078831 (OMIM: 609076) F-box/LRR-repeat protein  ( 533)  293 59.4 2.9e-08
XP_005270207 (OMIM: 610287) PREDICTED: F-box/LRR-r ( 300)  287 58.3 3.6e-08
XP_005270208 (OMIM: 610287) PREDICTED: F-box/LRR-r ( 300)  287 58.3 3.6e-08
NP_077302 (OMIM: 610287) F-box/LRR-repeat protein  ( 300)  287 58.3 3.6e-08


>>NP_036436 (OMIM: 605656) F-box/LRR-repeat protein 7 is  (491 aa)
 initn: 3321 init1: 3321 opt: 3321  Z-score: 2945.2  bits: 554.4 E(85289): 2.6e-157
Smith-Waterman score: 3321; 100.0% identity (100.0% similar) in 491 aa overlap (1-491:1-491)

               10        20        30        40        50        60
pF1KA0 MGANNGKQYGSEGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MGANNGKQYGSEGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALIC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 PPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 SMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 TPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 TPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 EHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 THLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 THLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 GRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 GRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 ECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 ECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKR
              430       440       450       460       470       480

              490 
pF1KA0 CVIEHTNPAFF
       :::::::::::
NP_036 CVIEHTNPAFF
              490 

>>XP_016864751 (OMIM: 605656) PREDICTED: F-box/LRR-repea  (486 aa)
 initn: 3239 init1: 3239 opt: 3239  Z-score: 2872.9  bits: 541.0 E(85289): 2.8e-153
Smith-Waterman score: 3239; 100.0% identity (100.0% similar) in 479 aa overlap (13-491:8-486)

               10        20        30        40        50        60
pF1KA0 MGANNGKQYGSEGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALIC
                   ::::::::::::::::::::::::::::::::::::::::::::::::
XP_016      MVYLSCPGKGSSSISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALIC
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KA0 PPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDH
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KA0 SMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQD
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KA0 TPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNL
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KA0 EHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQL
         240       250       260       270       280       290     

              310       320       330       340       350       360
pF1KA0 THLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 THLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHC
         300       310       320       330       340       350     

              370       380       390       400       410       420
pF1KA0 GRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGL
         360       370       380       390       400       410     

              430       440       450       460       470       480
pF1KA0 ECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ECLALNCFNLKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKR
         420       430       440       450       460       470     

              490 
pF1KA0 CVIEHTNPAFF
       :::::::::::
XP_016 CVIEHTNPAFF
         480      

>>NP_001265246 (OMIM: 605656) F-box/LRR-repeat protein 7  (444 aa)
 initn: 3028 init1: 3028 opt: 3028  Z-score: 2687.0  bits: 506.5 E(85289): 6.3e-143
Smith-Waterman score: 3028; 100.0% identity (100.0% similar) in 444 aa overlap (48-491:1-444)

        20        30        40        50        60        70       
pF1KA0 SISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALICPPNLPGFQNGRGSSTSS
                                     ::::::::::::::::::::::::::::::
NP_001                               MRTLSTPSPALICPPNLPGFQNGRGSSTSS
                                             10        20        30

        80        90       100       110       120       130       
pF1KA0 SSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRC
               40        50        60        70        80        90

       140       150       160       170       180       190       
pF1KA0 ARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCR
              100       110       120       130       140       150

       200       210       220       230       240       250       
pF1KA0 RLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLT
              160       170       180       190       200       210

       260       270       280       290       300       310       
pF1KA0 REASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLR
              220       230       240       250       260       270

       320       330       340       350       360       370       
pF1KA0 YLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSK
              280       290       300       310       320       330

       380       390       400       410       420       430       
pF1KA0 LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKS
              340       350       360       370       380       390

       440       450       460       470       480       490 
pF1KA0 CESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF
              400       410       420       430       440    

>>XP_011512300 (OMIM: 605656) PREDICTED: F-box/LRR-repea  (444 aa)
 initn: 3028 init1: 3028 opt: 3028  Z-score: 2687.0  bits: 506.5 E(85289): 6.3e-143
Smith-Waterman score: 3028; 100.0% identity (100.0% similar) in 444 aa overlap (48-491:1-444)

        20        30        40        50        60        70       
pF1KA0 SISSDVSSSTDHTPTKAQKNVATSEDSDLSMRTLSTPSPALICPPNLPGFQNGRGSSTSS
                                     ::::::::::::::::::::::::::::::
XP_011                               MRTLSTPSPALICPPNLPGFQNGRGSSTSS
                                             10        20        30

        80        90       100       110       120       130       
pF1KA0 SSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRC
               40        50        60        70        80        90

       140       150       160       170       180       190       
pF1KA0 ARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCR
              100       110       120       130       140       150

       200       210       220       230       240       250       
pF1KA0 RLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLT
              160       170       180       190       200       210

       260       270       280       290       300       310       
pF1KA0 REASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLR
              220       230       240       250       260       270

       320       330       340       350       360       370       
pF1KA0 YLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSK
              280       290       300       310       320       330

       380       390       400       410       420       430       
pF1KA0 LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKS
              340       350       360       370       380       390

       440       450       460       470       480       490 
pF1KA0 CESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CESITGQGLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF
              400       410       420       430       440    

>>NP_036289 (OMIM: 605652) F-box/LRR-repeat protein 2 is  (423 aa)
 initn: 1129 init1: 335 opt: 527  Z-score: 477.6  bits: 97.6 E(85289): 7.2e-20
Smith-Waterman score: 644; 30.1% identity (65.9% similar) in 369 aa overlap (116-479:14-366)

          90       100       110       120       130       140     
pF1KA0 AMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWY
                                     .:: . ...:::::    :::::.. . : 
NP_036                  MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWN
                                10        20        30        40   

         150       160        170       180       190       200    
pF1KA0 NLAWDPRLWRTIRLTGETINVD-RALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGL
        :: :   :. : : .   .:. :... ...: :        .:. ... ::  . : .:
NP_036 ILALDGSNWQRIDLFNFQTDVEGRVVENISKR-CGG------FLRKLSLRGCIGVGDSSL
            50        60        70               80        90      

          210       220       230       240       250       260    
pF1KA0 YTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKL
        :.:: : ....:...:: .:.. . ...  .: .:.:::..     .:.:.: ..:.: 
NP_036 KTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT-----SCVSIT-NSSLK-
        100       110       120       130            140           

          270       280       290       300       310       320    
pF1KA0 SPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCA
       .  .: . ...::... :  .  .:.....  :  :  : :: :..: ::.:...  :: 
NP_036 GISEGCR-NLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCH
     150        160       170       180       190       200        

          330       340       350       360       370       380    
pF1KA0 SIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNAR
        .  :....:  ..: :. .: .   ::. : .. :. .::...  ..  : .:. :.: 
NP_036 ELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAA
      210       220       230       240       250       260        

          390       400       410       420       430       440    
pF1KA0 GCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQ
        :  .:: :   ::.:: .:...:. .: :..:. :  :...: .:. :::. :: :: .
NP_036 RCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDD
      270       280       290       300       310       320        

           450         460        470       480       490          
pF1KA0 G-LQIVAANCFD--LQTLNVQDCEVSVE-ALRFVKRHCKRCVIEHTNPAFF         
       : :..  ..:    :..:....: . .. ::. .. .:.                     
NP_036 GILHLSNSTCGHERLRVLELDNCLLITDVALEHLE-NCRGLERLELYDCQQVTRAGIKRM
      330       340       350       360        370       380       

NP_036 RAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
       390       400       410       420   

>>NP_116264 (OMIM: 609086) F-box/LRR-repeat protein 20 i  (436 aa)
 initn: 807 init1: 330 opt: 520  Z-score: 471.3  bits: 96.5 E(85289): 1.6e-19
Smith-Waterman score: 628; 29.6% identity (63.1% similar) in 385 aa overlap (102-481:12-378)

              80        90       100       110        120       130
pF1KA0 GSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDR-LPDHSMVQIFSFLP
                                     :.    ....: :.. :: . ...::::: 
NP_116                    MRRDVNGVTKSRFEMFSNSDEAVINKKLPKELLLRIFSFLD
                                  10        20        30        40 

              140       150       160        170       180         
pF1KA0 TNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVD-RALKVLTRRLCQDTPNVCLMLE
       .  :::::.: : :  :: :   :. : :     ... :... ...: :        .:.
NP_116 VVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKR-CGG------FLR
              50        60        70        80         90          

     190       200       210       220       230       240         
pF1KA0 TVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCS
        ... ::  . : .: :.:: : ... :...:: . .. .  .. ..: .:.:::...:.
NP_116 KLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCT
          100       110       120       130       140       150    

     250       260       270       280       290       300         
pF1KA0 KVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCV
       ..: .::  .:  .  ::  .:..: . :.    : .: :.....  :  :  :.:. :.
NP_116 SITNMSL--KALSEGCPLL-EQLNISWCDQ----VTKD-GIQALVRGCGGLKALFLKGCT
          160         170        180            190       200      

     310       320       330       340       350       360         
pF1KA0 RLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIR
       .: ::.:.:.  .:  .  :... :  ..: ::  : .   .:. :  . :. .::. . 
NP_116 QLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILN
        210       220       230       240       250       260      

     370       380       390       400       410       420         
pF1KA0 YVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFN
        ... : .:: :..  :  .:: :   ::.:: .:...:. .:  ..:. :  :...:  
NP_116 ALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPR
        270       280       290       300       310       320      

     430       440       450          460       470       480      
pF1KA0 LKRLSLKSCESITGQGLQIVAAN-CF--DLQTLNVQDCEVSVEALRFVKRHCKRCVIEHT
       :. :::. :: :: .:.. .. . :   .:.......: . ..:     .: : :     
NP_116 LQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDA---SLEHLKSCHSLER
        330       340       350       360       370          380   

        490                                                 
pF1KA0 NPAFF                                                
                                                            
NP_116 IELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL
           390       400       410       420       430      

>>XP_005257803 (OMIM: 609086) PREDICTED: F-box/LRR-repea  (473 aa)
 initn: 807 init1: 330 opt: 520  Z-score: 470.8  bits: 96.5 E(85289): 1.8e-19
Smith-Waterman score: 641; 28.7% identity (62.2% similar) in 397 aa overlap (90-481:37-415)

      60        70        80        90       100       110         
pF1KA0 CPPNLPGFQNGRGSSTSSSSITGETVAMVHSPPPTRLTHPLIRLASRPQKEQASIDR-LP
                                     .:   :: :  .. .   ....: :.. ::
XP_005 GGGGGGGGNRGGAAAAALPQSRHIQKRRKMAPSRDRLLHFGFKATMFSNSDEAVINKKLP
         10        20        30        40        50        60      

      120       130       140       150       160        170       
pF1KA0 DHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVD-RALKVLTRRL
        . ...::::: .  :::::.: : :  :: :   :. : :     ... :... ...: 
XP_005 KELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKR-
         70        80        90       100       110       120      

       180       190       200       210       220       230       
pF1KA0 CQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLC
       :        .:. ... ::  . : .: :.:: : ... :...:: . .. .  .. ..:
XP_005 CGG------FLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFC
               130       140       150       160       170         

       240       250       260       270       280       290       
pF1KA0 PNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHC
        .:.:::...:...: .::  .:  .  ::      .. :... :  .  .:.....  :
XP_005 SKLRHLDLASCTSITNMSL--KALSEGCPL------LEQLNISWCDQVTKDGIQALVRGC
     180       190         200             210       220       230 

       300       310       320       330       340       350       
pF1KA0 TQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSI
         :  :.:. :..: ::.:.:.  .:  .  :... :  ..: ::  : .   .:. :  
XP_005 GGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCA
             240       250       260       270       280       290 

       360       370       380       390       400       410       
pF1KA0 AHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSD
       . :. .::. .  ... : .:: :..  :  .:: :   ::.:: .:...:. .:  ..:
XP_005 SGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITD
             300       310       320       330       340       350 

       420       430       440       450          460       470    
pF1KA0 TGLECLALNCFNLKRLSLKSCESITGQGLQIVAAN-CF--DLQTLNVQDCEVSVEALRFV
       . :  :...:  :. :::. :: :: .:.. .. . :   .:.......: . ..:    
XP_005 STLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDA---S
             360       370       380       390       400           

          480       490                                            
pF1KA0 KRHCKRCVIEHTNPAFF                                           
        .: : :                                                     
XP_005 LEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCR
      410       420       430       440       450       460        

>>XP_005265071 (OMIM: 605652) PREDICTED: F-box/LRR-repea  (454 aa)
 initn: 1108 init1: 270 opt: 469  Z-score: 426.0  bits: 88.2 E(85289): 5.5e-17
Smith-Waterman score: 586; 30.1% identity (65.2% similar) in 319 aa overlap (116-433:14-317)

          90       100       110       120       130       140     
pF1KA0 AMVHSPPPTRLTHPLIRLASRPQKEQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWY
                                     .:: . ...:::::    :::::.. . : 
XP_005                  MVFSNNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWN
                                10        20        30        40   

         150       160        170       180       190       200    
pF1KA0 NLAWDPRLWRTIRLTGETINVD-RALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGL
        :: :   :. : : .   .:. :... ...: :        .:. ... ::  . : .:
XP_005 ILALDGSNWQRIDLFNFQTDVEGRVVENISKR-CGG------FLRKLSLRGCIGVGDSSL
            50        60        70               80        90      

          210       220       230       240       250       260    
pF1KA0 YTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLTREASIKL
        :.:: : ....:...:: .:.. . ...  .: .:.:::..     .:.:.: ..:.: 
XP_005 KTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLT-----SCVSIT-NSSLK-
        100       110       120       130            140           

          270       280       290       300       310       320    
pF1KA0 SPLHGKQISIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCA
       .  .: . ...::... :  .  .:.....  :  :  : :: :..: ::.:...  :: 
XP_005 GISEGCR-NLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCH
     150        160       170       180       190       200        

          330       340       350       360       370       380    
pF1KA0 SIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAKYCSKLRYLNAR
        .  :....:  ..: :. .: .   ::. : .. :. .::...  ..  : .:. :.: 
XP_005 ELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAA
      210       220       230       240       250       260        

          390       400       410       420       430       440    
pF1KA0 GCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESITGQ
        :  .:: :   ::.:: .:...:. .: :..:. :  :...: .:. :           
XP_005 RCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALVSLSFSDIIHL
      270       280       290       300       310       320        

          450       460       470       480       490              
pF1KA0 GLQIVAANCFDLQTLNVQDCEVSVEALRFVKRHCKRCVIEHTNPAFF             
                                                                   
XP_005 LKMKEPSHHNKKLFGFSFCKSLSHCELITDDGILHLSNSTCGHERLRVLELDNCLLITDV
      330       340       350       360       370       380        

>>XP_016861583 (OMIM: 605652) PREDICTED: F-box/LRR-repea  (318 aa)
 initn: 590 init1: 335 opt: 434  Z-score: 397.3  bits: 82.3 E(85289): 2.2e-15
Smith-Waterman score: 457; 30.2% identity (62.2% similar) in 291 aa overlap (205-491:18-295)

          180       190       200       210       220       230    
pF1KA0 RRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVV
                                     :.... : .:..:....: .:.: ..  . 
XP_016              MDAQKSLTVRLLFFSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGIS
                            10        20        30        40       

          240       250       260       270       280       290    
pF1KA0 SLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIA
         : :::.:..: :...:  ..  :: ..     : . ... : .  :  ::::.:. : 
XP_016 EGCRNLEYLNLSWCDQITKDGI--EALVR-----GCR-GLKALLLRGCTQLEDEALKHIQ
        50        60          70              80        90         

          300       310       320       330       340       350    
pF1KA0 AHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRY
        .: .:. : :. : :.::::.  .   :  .. : .: :  ..: .:  ..    ::. 
XP_016 NYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQI
     100       110       120       130       140       150         

          360       370       380       390       400       410    
pF1KA0 LSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPL
       :  :.:...::.:.  .:. : .:. .. . :  :::  .  :. .: ::..:....: :
XP_016 LEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCEL
     160       170       180       190       200       210         

          420          430       440       450       460       470 
pF1KA0 VSDTGLECLALN-CFN--LKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEAL
       ..: :.  :. . : .  :. : : .:  ::  .:. .  ::  :. :.. ::.  ..: 
XP_016 ITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHLE-NCRGLERLELYDCQQVTRAG
     220       230       240       250        260       270        

             480        490                        
pF1KA0 RFVKRHCKRCVIEHTN-PAFF                       
         .::   :  . :..  :.:                       
XP_016 --IKRM--RAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
        280         290       300       310        

>>XP_005265074 (OMIM: 605652) PREDICTED: F-box/LRR-repea  (318 aa)
 initn: 590 init1: 335 opt: 434  Z-score: 397.3  bits: 82.3 E(85289): 2.2e-15
Smith-Waterman score: 457; 30.2% identity (62.2% similar) in 291 aa overlap (205-491:18-295)

          180       190       200       210       220       230    
pF1KA0 RRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVV
                                     :.... : .:..:....: .:.: ..  . 
XP_005              MDAQKSLTVRLLFFSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGIS
                            10        20        30        40       

          240       250       260       270       280       290    
pF1KA0 SLCPNLEHLDVSGCSKVTCISLTREASIKLSPLHGKQISIRYLDMTDCFVLEDEGLHTIA
         : :::.:..: :...:  ..  :: ..     : . ... : .  :  ::::.:. : 
XP_005 EGCRNLEYLNLSWCDQITKDGI--EALVR-----GCR-GLKALLLRGCTQLEDEALKHIQ
        50        60          70              80        90         

          300       310       320       330       340       350    
pF1KA0 AHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRY
        .: .:. : :. : :.::::.  .   :  .. : .: :  ..: .:  ..    ::. 
XP_005 NYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQI
     100       110       120       130       140       150         

          360       370       380       390       400       410    
pF1KA0 LSIAHCGRVTDVGIRYVAKYCSKLRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPL
       :  :.:...::.:.  .:. : .:. .. . :  :::  .  :. .: ::..:....: :
XP_005 LEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCEL
     160       170       180       190       200       210         

          420          430       440       450       460       470 
pF1KA0 VSDTGLECLALN-CFN--LKRLSLKSCESITGQGLQIVAANCFDLQTLNVQDCEVSVEAL
       ..: :.  :. . : .  :. : : .:  ::  .:. .  ::  :. :.. ::.  ..: 
XP_005 ITDDGILHLSNSTCGHERLRVLELDNCLLITDVALEHLE-NCRGLERLELYDCQQVTRAG
     220       230       240       250        260       270        

             480        490                        
pF1KA0 RFVKRHCKRCVIEHTN-PAFF                       
         .::   :  . :..  :.:                       
XP_005 --IKRM--RAQLPHVKVHAYFAPVTPPTAVAGSGQRLCRCCVIL
        280         290       300       310        




491 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:04:03 2016 done: Fri Nov  4 01:04:04 2016
 Total Scan time:  7.470 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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