Result of FASTA (ccds) for
pF1KA0790
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0790, 1247 aa
1>>>pF1KA0790 1247 - 1247 aa - 1247 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.6694+/-0.00103; mu= -5.4885+/- 0.063
mean_var=341.3180+/-70.604, 0's: 0 Z-trim(115.0): 21 B-trim: 217 in 2/54
Lambda= 0.069422
statistics sampled from 15512 (15523) to 15512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.477), width: 16
Scan time: 5.460
The best scores are: opt bits E(32554)
CCDS5212.1 SASH1 gene_id:23328|Hs108|chr6 (1247) 8410 857.0 0
CCDS42906.1 SAMSN1 gene_id:64092|Hs108|chr21 ( 373) 855 100.0 1.2e-20
CCDS58786.1 SAMSN1 gene_id:64092|Hs108|chr21 ( 441) 855 100.0 1.4e-20
CCDS14614.1 SASH3 gene_id:54440|Hs108|chrX ( 380) 827 97.2 8.5e-20
CCDS74774.1 SAMSN1 gene_id:64092|Hs108|chr21 ( 304) 793 93.7 7.5e-19
>>CCDS5212.1 SASH1 gene_id:23328|Hs108|chr6 (1247 aa)
initn: 8410 init1: 8410 opt: 8410 Z-score: 4565.9 bits: 857.0 E(32554): 0
Smith-Waterman score: 8410; 99.9% identity (100.0% similar) in 1247 aa overlap (1-1247:1-1247)
10 20 30 40 50 60
pF1KA0 MEDAGAAGPGPEPEPEPEPEPEPAPEPEPEPKPGAGTSEAFSRLWTDVMGILDGSLGNID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 MEDAGAAGPGPEPEPEPEPEPEPAPEPEPEPKPGAGTSEAFSRLWTDVMGILDGSLGNID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 DLAQQYADYYNTCFSDVCERMEELRKRRVSQDLEVEKPDASPTSLQLRSQIEESLGFCSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 DLAQQYADYYNTCFSDVCERMEELRKRRVSQDLEVEKPDASPTSLQLRSQIEESLGFCSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 VSTPEVERKNPLHKSNSEDSSVGKGDWKKKNKYFWQNFRKNQKGIMRQTSKGEDVGYVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VSTPEVERKNPLHKSNSEDSSVGKGDWKKKNKYFWQNFRKNQKGIMRQTSKGEDVGYVAS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 EITMSDEERIQLMMMVKEKMITIEEALARLKEYEAQHRQSAALDPADWPDGSYPTFDGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 EITMSDEERIQLMMMVKEKMITIEEALARLKEYEAQHRQSAALDPADWPDGSYPTFDGSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 NCNSREQSDDETEESVKFKRLHKLVNSTRRVRKKLIRVEEMKKPSTEGGEEHVFENSPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 NCNSREQSDDETEESVKFKRLHKLVNSTRRVRKKLIRVEEMKKPSTEGGEEHVFENSPVL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 DERSALYSGVHKKPLFFDGSPEKPPEDDSDSLTTSPSSSSLDTWGAGRKLVKTFSKGESR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 DERSALYSGVHKKPLFFDGSPEKPPEDDSDSLTTSPSSSSLDTWGAGRKLVKTFSKGESR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 GLIKPPKKMGTFFSYPEEEKAQKVSRSLTEGEMKKGLGSLSHGRTCSFGGFDLTNRSLHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GLIKPPKKMGTFFSYPEEEKAQKVSRSLTEGEMKKGLGSLSHGRTCSFGGFDLTNRSLHV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 GSNNSDPMGKEGDFVYKEVIKSPTASRISLGKKVKSVKETMRKRMSKKYSSSVSEQDSGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GSNNSDPMGKEGDFVYKEVIKSPTASRISLGKKVKSVKETMRKRMSKKYSSSVSEQDSGL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 DGMPGSPPPSQPDPEHLDKPKLKAGGSVESLRSSLSGQSSMSGQTVSTTDSSTSNRESVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 DGMPGSPPPSQPDPEHLDKPKLKAGGSVESLRSSLSGQSSMSGQTVSTTDSSTSNRESVK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 SEDGDDEEPPYRGPFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SEDGDDEEPPYRGPFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 KVGTFKFIYVDVLSEDEEKPKRPTRRRRKGRPPQPKSVEDLLDRINLKEHMPTFLFNGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 KVGTFKFIYVDVLSEDEEKPKRPTRRRRKGRPPQPKSVEDLLDRINLKEHMPTFLFNGYE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 DLDTFKLLEEEDLDELKIRDPEHRAVLLTAVELLQEYDSNSDQSGSQEKLLVDSQGLSGC
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS52 DLDTFKLLEEEDLDELNIRDPEHRAVLLTAVELLQEYDSNSDQSGSQEKLLVDSQGLSGC
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 SPRDSGCYESSENLENGKTRKASLLSAKSSTEPSLKSFSRNQLGNYPTLPLMKSGDALKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SPRDSGCYESSENLENGKTRKASLLSAKSSTEPSLKSFSRNQLGNYPTLPLMKSGDALKQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 GQEEGRLGGGLAPDTSKSCDPPGVTGLNKNRRSLPVSICRSCETLEGPQTVDTWPRSHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 GQEEGRLGGGLAPDTSKSCDPPGVTGLNKNRRSLPVSICRSCETLEGPQTVDTWPRSHSL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 DDLQVEPGAEQDVPTEVTEPPPQIVPEVPQKTTASSTKAQPLEQDSAVDNALLLTQSKRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 DDLQVEPGAEQDVPTEVTEPPPQIVPEVPQKTTASSTKAQPLEQDSAVDNALLLTQSKRF
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 SEPQKLTTKKLEGSIAASGRGLSPPQCLPRNYDAQPPGAKHGLARTPLEGHRKGHEFEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 SEPQKLTTKKLEGSIAASGRGLSPPQCLPRNYDAQPPGAKHGLARTPLEGHRKGHEFEGT
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 HHPLGTKEGVDAEQRMQPKIPSQPPPVPAKKSRERLANGLHPVPMGPSGALPSPDAPCLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 HHPLGTKEGVDAEQRMQPKIPSQPPPVPAKKSRERLANGLHPVPMGPSGALPSPDAPCLP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 VKRGSPASPTSPSDCPPALAPRPLSGQAPGSPPSTRPPPWLSELPENTSLQEHGVKLGPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VKRGSPASPTSPSDCPPALAPRPLSGQAPGSPPSTRPPPWLSELPENTSLQEHGVKLGPA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 LTRKVSCARGVDLETLTENKLHAEGIDLTEEPYSDKHGRCGIPEALVQRYAEDLDQPERD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 LTRKVSCARGVDLETLTENKLHAEGIDLTEEPYSDKHGRCGIPEALVQRYAEDLDQPERD
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 VAANMDQIRVKQLRKQHRMAIPSGGLTEICRKPVSPGCISSVSDWLISIGLPMYAGTLST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 VAANMDQIRVKQLRKQHRMAIPSGGLTEICRKPVSPGCISSVSDWLISIGLPMYAGTLST
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240
pF1KA0 AGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPGPEAM
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS52 AGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPGPEAM
1210 1220 1230 1240
>>CCDS42906.1 SAMSN1 gene_id:64092|Hs108|chr21 (373 aa)
initn: 778 init1: 492 opt: 855 Z-score: 484.1 bits: 100.0 E(32554): 1.2e-20
Smith-Waterman score: 883; 45.7% identity (71.1% similar) in 346 aa overlap (404-738:20-351)
380 390 400 410 420 430
pF1KA0 SYPEEEKAQKVSRSLTEGEMKKGLGSLSHGRTCSFGGFD-LTNRSLHVGSNNSDPMGKEG
:. :::.:: . : :: ..... ..::
CCDS42 MLKRKPSNVSEKEKHQKPKRSSSFGNFDRFRNNSLSKPDDSTE--AHEG
10 20 30 40
440 450 460 470 480 490
pF1KA0 DFVYKEVIKSPTASRIS-LGKKVKSVKETMRKRMSKKYSSSVSEQDSGLDGMPGSPPPSQ
: . .: :.. . ::::..... ::.:...::: ...::. . :: .. : .
CCDS42 DPTNGSGEQSKTSNNGGGLGKKMRAISWTMKKKVGKKYIKALSEEKDEEDG-ENAHPYRN
50 60 70 80 90 100
500 510 520 530 540
pF1KA0 PDP---EHLDKPKLKAGGSVESLRSSLSGQSSMSGQTVSTTDSSTSNRESVKSEDGDDEE
:: : .: .:::. :..:: : :::: :: ... ...::::.: . .: .
CCDS42 SDPVIGTHTEKVSLKASDSMDSLYS---GQSSSSG--ITSCSDGTSNRDSFRLDD----D
110 120 130 140 150
550 560 570 580 590 600
pF1KA0 PPYRGPFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFI
:: ::::::::::::::::::::::::.::::::::: : ::: : :.::::::.::::
CCDS42 GPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFI
160 170 180 190 200 210
610 620 630 640 650 660
pF1KA0 YVDVLSEDEEKPKRPTRRRRKGRPPQPKSVEDLLDRINLKEHMPTFLFNGYEDLDTFKLL
::::.::.: ::. . :.. . :.....:.::.:.:. :.:.:::: :. .: .
CCDS42 YVDVISEEEAAPKK-IKANRRSNSKKSKTLQEFLERIHLQEYTSTLLLNGYETLEDLKDI
220 230 240 250 260 270
670 680 690 700 710 720
pF1KA0 EEEDLDELKIRDPEHRAVLLTAVELLQEYDSNSDQSGSQEKLLVDSQ------GLSGCSP
.: : ::.:..:. : ::.:.: . : . ..: . : : ..:. :. : :
CCDS42 KESHLIELNIENPDDRRRLLSAAENFLEEEIIQEQENEPEPLSLSSDISLNKSQLDDC-P
280 290 300 310 320 330
730 740 750 760 770 780
pF1KA0 RDSGCYESSENLENGKTRKASLLSAKSSTEPSLKSFSRNQLGNYPTLPLMKSGDALKQGQ
:::::: :: : .:::
CCDS42 RDSGCYISSGNSDNGKEDLESENLSDMVHKIIITEPSD
340 350 360 370
>>CCDS58786.1 SAMSN1 gene_id:64092|Hs108|chr21 (441 aa)
initn: 778 init1: 492 opt: 855 Z-score: 483.1 bits: 100.0 E(32554): 1.4e-20
Smith-Waterman score: 883; 45.7% identity (71.1% similar) in 346 aa overlap (404-738:88-419)
380 390 400 410 420 430
pF1KA0 SYPEEEKAQKVSRSLTEGEMKKGLGSLSHGRTCSFGGFD-LTNRSLHVGSNNSDPMGKEG
:. :::.:: . : :: ..... ..::
CCDS58 QVGPWDHCSSCIRHTRLKSSCSDMDLLHSWRSSSFGNFDRFRNNSLSKPDDSTE--AHEG
60 70 80 90 100 110
440 450 460 470 480 490
pF1KA0 DFVYKEVIKSPTASRIS-LGKKVKSVKETMRKRMSKKYSSSVSEQDSGLDGMPGSPPPSQ
: . .: :.. . ::::..... ::.:...::: ...::. . :: .. : .
CCDS58 DPTNGSGEQSKTSNNGGGLGKKMRAISWTMKKKVGKKYIKALSEEKDEEDG-ENAHPYRN
120 130 140 150 160 170
500 510 520 530 540
pF1KA0 PDP---EHLDKPKLKAGGSVESLRSSLSGQSSMSGQTVSTTDSSTSNRESVKSEDGDDEE
:: : .: .:::. :..:: : :::: :: ... ...::::.: . .: .
CCDS58 SDPVIGTHTEKVSLKASDSMDSLYS---GQSSSSG--ITSCSDGTSNRDSFRLDD----D
180 190 200 210 220
550 560 570 580 590 600
pF1KA0 PPYRGPFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFI
:: ::::::::::::::::::::::::.::::::::: : ::: : :.::::::.::::
CCDS58 GPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNNKVGNFKFI
230 240 250 260 270 280
610 620 630 640 650 660
pF1KA0 YVDVLSEDEEKPKRPTRRRRKGRPPQPKSVEDLLDRINLKEHMPTFLFNGYEDLDTFKLL
::::.::.: ::. . :.. . :.....:.::.:.:. :.:.:::: :. .: .
CCDS58 YVDVISEEEAAPKK-IKANRRSNSKKSKTLQEFLERIHLQEYTSTLLLNGYETLEDLKDI
290 300 310 320 330 340
670 680 690 700 710 720
pF1KA0 EEEDLDELKIRDPEHRAVLLTAVELLQEYDSNSDQSGSQEKLLVDSQ------GLSGCSP
.: : ::.:..:. : ::.:.: . : . ..: . : : ..:. :. : :
CCDS58 KESHLIELNIENPDDRRRLLSAAENFLEEEIIQEQENEPEPLSLSSDISLNKSQLDDC-P
350 360 370 380 390 400
730 740 750 760 770 780
pF1KA0 RDSGCYESSENLENGKTRKASLLSAKSSTEPSLKSFSRNQLGNYPTLPLMKSGDALKQGQ
:::::: :: : .:::
CCDS58 RDSGCYISSGNSDNGKEDLESENLSDMVHKIIITEPSD
410 420 430 440
>>CCDS14614.1 SASH3 gene_id:54440|Hs108|chrX (380 aa)
initn: 823 init1: 687 opt: 827 Z-score: 468.9 bits: 97.2 E(32554): 8.5e-20
Smith-Waterman score: 827; 45.0% identity (67.0% similar) in 351 aa overlap (400-733:20-357)
370 380 390 400 410 420
pF1KA0 GTFFSYPEEEKAQKVSRSLTEGEMKKGLGSLSHGRTCSFGGFDLTNRSLHVGSN---NSD
:: :. :: : .. : : :. : :
CCDS14 MLRRKPSNASEKEPTQKKKLSLQRSSSFKDFAKSKPSSPVVSEKEFNLD
10 20 30 40
430 440 450 460 470 480
pF1KA0 PMGKEGDFVYKEVIKSPTASRIS---LGKKVKSV-KETMRKRMSKKYSSSVSEQDSGLDG
: : . .: . : :::: ..: ..:: ..:.: . ...::. . :
CCDS14 DNIPEDD----SGVPTPEDAGKSGKKLGKKWRAVISRTMNRKMGKMMVKALSEEMA--DT
50 60 70 80 90 100
490 500 510 520 530 540
pF1KA0 MP-GSPPPSQPDPEHLDKPKLKAGGSVESLRSSLSGQSSMSGQTVSTTDSSTSNRESVKS
. :: :..:: ::.: . :.. ..: : ..: :. :. : .
CCDS14 LEEGSASPTSPD-YSLDSP------GPEKMALAFSEQEEHELPVLSRQASTGSELCSPSP
110 120 130 140 150
550 560 570 580 590
pF1KA0 EDGD-DEEPP---YRGPFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGL
.:. :::: : ::::::::::::::::::: :::::.:::.:.:: :::.:::.::
CCDS14 GSGSFGEEPPAPQYTGPFCGRARVHTDFTPSPYDHDSLKLQKGDVIQIIEKPPVGTWLGL
160 170 180 190 200 210
600 610 620 630 640 650
pF1KA0 LNNKVGTFKFIYVDVLSEDEEKPKRPTRRRRKGRPPQPKSVEDLLDRINLKEHMPTFLFN
::.:::.::::::::: :. ::.::. ::. :.::....::.::.:.:: :.:.:
CCDS14 LNGKVGSFKFIYVDVLPEEAVGHARPSRRQSKGKRPKPKTLHELLERIGLEEHTSTLLLN
220 230 240 250 260 270
660 670 680 690 700 710
pF1KA0 GYEDLDTFKLLEEEDLDELKIRDPEHRAVLLTAVELLQEYDSNSDQS-----GSQEKLLV
::. :. :: :.: :.::.: ::.::: ::::.::: .::..:... .::: .
CCDS14 GYQTLEDFKELRETHLNELNIMDPQHRAKLLTAAELLLDYDTGSEEAEEGAESSQEPVAH
280 290 300 310 320 330
720 730 740 750 760 770
pF1KA0 DSQGLSGCSPRDSGCYESSENLENGKTRKASLLSAKSSTEPSLKSFSRNQLGNYPTLPLM
. . ::::::.:.::.
CCDS14 TVSEPKVDIPRDSGCFEGSESGRDDAELAGTEEQLQGLSLAGAP
340 350 360 370 380
>>CCDS74774.1 SAMSN1 gene_id:64092|Hs108|chr21 (304 aa)
initn: 753 init1: 492 opt: 793 Z-score: 451.9 bits: 93.7 E(32554): 7.5e-19
Smith-Waterman score: 821; 47.6% identity (72.4% similar) in 294 aa overlap (454-738:1-282)
430 440 450 460 470 480
pF1KA0 NSDPMGKEGDFVYKEVIKSPTASRISLGKKVKSVKETMRKRMSKKYSSSVSEQDSGLDGM
..... ::.:...::: ...::. . ::
CCDS74 MRAISWTMKKKVGKKYIKALSEEKDEEDG-
10 20
490 500 510 520 530 540
pF1KA0 PGSPPPSQPDP---EHLDKPKLKAGGSVESLRSSLSGQSSMSGQTVSTTDSSTSNRESVK
.. : . :: : .: .:::. :..:: ::::: :: ... ...::::.: .
CCDS74 ENAHPYRNSDPVIGTHTEKVSLKASDSMDSL---YSGQSSSSG--ITSCSDGTSNRDSFR
30 40 50 60 70 80
550 560 570 580 590 600
pF1KA0 SEDGDDEEPPYRGPFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNN
.: . :: ::::::::::::::::::::::::.::::::::: : ::: : :.:::
CCDS74 LDD----DGPYSGPFCGRARVHTDFTPSPYDTDSLKIKKGDIIDIICKTPMGMWTGMLNN
90 100 110 120 130 140
610 620 630 640 650 660
pF1KA0 KVGTFKFIYVDVLSEDEEKPKRPTRRRRKGRPPQPKSVEDLLDRINLKEHMPTFLFNGYE
:::.::::::::.::.: ::. . :.. . :.....:.::.:.:. :.:.::::
CCDS74 KVGNFKFIYVDVISEEEAAPKK-IKANRRSNSKKSKTLQEFLERIHLQEYTSTLLLNGYE
150 160 170 180 190
670 680 690 700 710
pF1KA0 DLDTFKLLEEEDLDELKIRDPEHRAVLLTAVELLQEYDSNSDQSGSQEKLLVDSQ-----
:. .: ..: : ::.:..:. : ::.:.: . : . ..: . : : ..:.
CCDS74 TLEDLKDIKESHLIELNIENPDDRRRLLSAAENFLEEEIIQEQENEPEPLSLSSDISLNK
200 210 220 230 240 250
720 730 740 750 760 770
pF1KA0 -GLSGCSPRDSGCYESSENLENGKTRKASLLSAKSSTEPSLKSFSRNQLGNYPTLPLMKS
:. : ::::::: :: : .:::
CCDS74 SQLDDC-PRDSGCYISSGNSDNGKEDLESENLSDMVHKIIITEPSD
260 270 280 290 300
1247 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:01:18 2016 done: Fri Nov 4 01:01:19 2016
Total Scan time: 5.460 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]