GENSCAN 1.0	Date run:  4-Nov-116	Time: 00:45:50

Sequence gi568815596r:144289454_144617350 : 327897 bp : 38.55% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -    366    361    6                               1.05
 1.04 Term -  17163  17128   36  0  0   81   54    51 0.358  -2.64
 1.03 Intr -  26471  26369  103  1  1   75   98   117 0.966  10.66
 1.02 Intr -  28135  28026  110  1  2   67  116    13 0.970   0.16
 1.01 Init -  31151  31110   42  2  0  102  105    66 0.985  10.17
 1.00 Prom -  32333  32294   40                              -9.65

 2.00 Prom +  34760  34799   40                              -4.65
 2.01 Init +  38187  38318  132  2  0  112   97    53 0.823   8.79
 2.02 Term +  43541  43747  207  1  0   54   44   187 0.835   7.26
 2.03 PlyA +  44288  44293    6                               1.05

 3.05 PlyA -  45840  45835    6                               1.05
 3.04 Term -  76151  75981  171  2  0   46   48   150 0.011   3.64
 3.03 Intr -  87453  87323  131  1  2   58   73    61 0.064   1.09
 3.02 Intr -  91577  91430  148  2  1   96   36   133 0.159   7.79
 3.01 Init -  92371  92255  117  1  0   15   72   133 0.982   4.65
 3.00 Prom -  95676  95637   40                              -6.85

 4.10 PlyA -  96050  96045    6                               1.05
 4.09 Term - 100575  99998  578  1  2  118   38   781 0.999  69.74
 4.08 Intr - 107139 106959  181  0  1   68   80   139 0.942   9.62
 4.07 Intr - 110892 108848 2045  1  2   78  103  1137 0.615 100.57
 4.06 Intr - 111854 111746  109  2  1   87   89    95 0.999   8.44
 4.05 Intr - 114677 114463  215  0  2   99   75   269 0.985  24.21
 4.04 Intr - 115571 115383  189  0  0   64   77   263 0.881  21.44
 4.03 Intr - 135414 135343   72  1  0   77  109    79 0.699   7.36
 4.02 Intr - 140573 140316  258  0  0   51  111   271 0.687  22.21
 4.01 Init - 148673 148610   64  2  1   81   86    35 0.317   3.96
 4.00 Prom - 176703 176664   40                              -5.55

 5.04 PlyA - 177605 177600    6                               1.05
 5.03 Term - 184660 184572   89  2  2  102   42   120 0.762   5.64
 5.02 Intr - 191264 191240   25  2  1   80   96    13 0.481  -2.02
 5.01 Init - 195539 195486   54  2  0   47   89   103 0.914   7.63
 5.00 Prom - 199579 199540   40                              -7.65

 6.00 Prom + 200872 200911   40                              -6.05
 6.01 Sngl + 201521 201691  171  1  0   75   45   203 0.975   9.35
 6.02 PlyA + 202220 202225    6                               1.05

 7.07 PlyA - 205709 205704    6                               1.05
 7.06 Term - 209099 208977  123  2  0   87   47    89 0.434   2.10
 7.05 Intr - 215180 215045  136  1  1  129   42    41 0.214   3.25
 7.04 Intr - 219973 219808  166  2  1   99   50    93 0.277   4.70
 7.03 Intr - 227966 227825  142  2  1   60  107   122 0.108  10.31
 7.02 Intr - 237683 237564  120  2  0   94   78    80 0.471   7.37
 7.01 Init - 238687 238544  144  1  0   75   93     9 0.358   0.27
 7.00 Prom - 241608 241569   40                              -3.65

 8.00 Prom + 242409 242448   40                              -3.35
 8.01 Init + 250067 250134   68  1  2   70   36    66 0.018   0.20
 8.02 Intr + 279547 279678  132  1  0    2   58   143 0.017   1.54
 8.03 Term + 291660 291777  118  0  1  101   43   163 0.412  10.13
 8.04 PlyA + 292675 292680    6                               1.05

 9.03 PlyA - 292713 292708    6                               1.05
 9.02 Term - 293649 293497  153  0  0   48   42   129 0.240   1.24
 9.01 Init - 296270 296187   84  2  0   44   85    94 0.645   5.57

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 233459 233684  226  2  1   82   41   185 0.900   8.47
S.002 Term + 271749 271918  170  1  2   29   39   200 0.902   6.26


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:144289454_144617350|GENSCAN_predicted_peptide_1|96_aa
MEQAKVGELEFDLKCFLQRTHLVVIFIGYEEGSDPGIRGLQKTFWRKINVRGSEVKHSQG
DSVMAELKCEYCGTLVWDVVMKTGQVDVLTHNGIQN

>gi568815596r:144289454_144617350|GENSCAN_predicted_CDS_1|291_bp
atggagcaggccaaagttggagaactggaatttgacctgaagtgttttttacaaaggacc
catttagtcgtgatatttataggatatgaggaaggcagtgatcctggcattcgtggactc
cagaaaacattttggagaaaaattaatgtaagggggagtgaagtaaagcacagccaaggt
gatagtgtcatggcagagcttaaatgtgagtactgtggcaccttggtgtgggatgtggta
atgaagacaggacaggttgacgtgctaactcacaatggtattcagaactga

>gi568815596r:144289454_144617350|GENSCAN_predicted_peptide_2|112_aa
MEPRSQYLKGQSGDVSPENSITGSWLCKTPTTYLWIRIGPSPLKSLRAPVRVPGSLADTS
TCSAARSSSTAALPMPLNIPPSGPPRFPPGKAHAFLYLHFSRPFGSDYSTHF

>gi568815596r:144289454_144617350|GENSCAN_predicted_CDS_2|339_bp
atggagcctagatctcagtatctaaagggtcaatctggtgatgtgagtccagaaaacagt
atcacaggatcttggctctgcaagaccccaaccacctacctatggataagaataggtccc
agccccctaaagagcctcagggcccctgtgcgggttcctggctcccttgccgacacctct
acctgctctgcagcccggagctcctccacagctgctttgccaatgcctcttaatatccct
ccttctggacctcctcgattccctcctggcaaggctcatgctttcctttatctccatttt
tcccgtcctttcggttctgactactccacacacttctga

>gi568815596r:144289454_144617350|GENSCAN_predicted_peptide_3|188_aa
MILTWSEEETRQQVYTVRGAVGIHKSAMGKLEQTETDQKVKEGDVIVNEMEVADSQLGVG
ADPQKPLRAVVIDLSLKVVKRSAMGRLCSTSSLTFTKWTWQYPSPFPLQNLVNVTHQVTQ
VKVMRVILLDLYRRRAKCLVLERNMIIFAFRIPVVLSPVEDSTGQLIVCKEWDVIQQNFR
ERKRCRVS

>gi568815596r:144289454_144617350|GENSCAN_predicted_CDS_3|567_bp
atgatcctgacgtggtctgaggaggaaacaaggcagcaggtgtacacagtaagaggagca
gtaggaattcataaatctgcaatgggaaaattggaacagacagaaacagaccaaaaggta
aaagaaggtgatgtgattgtaaatgagatggaagtagcggacagtcagctgggggtgggt
gcagatccacaaaagcccttgagggcagtggtgattgacttgagcctgaaggttgtaaag
aggtcagccatgggaagattgtgcagcacctcaagcctgacctttacaaaatggacatgg
cagtacccttctcccttccccctacaaaatctggtgaatgtcacccaccaggtcactcag
gtgaaagtcatgagagtcatcctgctggatctctatagaagaagagctaagtgcttggtt
ctggagcggaacatgatcatttttgcctttcggattcctgtggtattgtcccctgtggag
gattcaacaggtcagctaattgtctgtaaggaatgggatgttattcagcagaatttcagg
gagaggaagagatgcagagtctcataa

>gi568815596r:144289454_144617350|GENSCAN_predicted_peptide_4|1236_aa
MECLLQEKYFFKRQAVATSDEVVNYDNVVDTGSETDEEDKLHIAEDDGIANPLDQETSPA
SVPNHESSPHVSQALLPREEEEDEIREGGVEHPWHNNEILQASVDGPEEMKEDYDTMGPE
ATIQTAINNGTVKNANCTSDFEEYFAKRKLEERDGHAVSIEEYLQRSDTAIIYPEAPEEL
SRLGTPEANGQEENDLPPGTPDAFAQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEENFSC
PLCSYTFAYRTQLERHMVTHKPGTDQHQMLTQGAGNRKFKCTECGKAFKYKHHLKEHLRI
HSDSSLGRQLQLLSNQGNVTVILIIILGEKPYECPNCKKRFSHSGSYSSHISSKKCIGLI
SVNGRMRNNIKTGSSPNSVSSSPTNSAITQLRNKLENGKPLSMSEQTGLLKIKTEPLDFN
DYKVLMATHGFSGTSPFMNGGLGATSPLGVHPSAQSPMQHLGVGMEAPLLGFPTMNSNLS
EVQKVLQIVDNTVSRQKMDCKAEEISKLKGYHMKDPCSQPEEQGVTSPNIPPVGLPVVSH
NGATKSIIDYTLEKVNEAKACLQSLTTDSRRQISNIKKEKLRTLIDLVTDDKMIENHNIS
TPFSCQFCKESFPGPIPLHQHERYLCKMNEEIKAVLQPHENIVPNKAGVFVDNKALLLSS
VLSEKGMTSPINPYKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY
QYSNSRSPSLERSSKPLAPNSNPPTKDSLLPRSPVKPMDSITSPSIAELHNSVTNCDPPL
RLTKPSHFTNIKPVEKLDHSRSNTPSPLNLSSTSSKNSHSSSYTPNSFSSEELQAEPLDL
SLPKQMKEPKSIIATKNKTKASSISLDHNSVSSSSENSDEPLNLTFIKKEFSNSNNLDNK
STNPVFSMNPFSAKPLYTALPPQSAFPPATFMPPVQTSIPGLRPYPGLDQMSFLPHMAYT
YPTGAATFADMQQRRKYQRKQGFQGELLDGAQDYMSGLDDMTDSDSCLSRKKIKKTESGM
YACDLCDKTFQKSSSLLRHKYEHTGKRPHQCQICKKAFKHKHHLIEHSRLHSGEKPYQCD
KCGKRFSHSGSYSQHMNHRYSYCKREAEEREAAEREAREKGHLEPTELLMNRAYLQSITP
QGYSDSEERESMPRDGESEKEHEKEGEDGYGKLGRQDGDEEFEEEEEESENKSMDTDPET
IRDEEETGDHSMDDSSEDGKMETKSDHEEDNMEDGM

>gi568815596r:144289454_144617350|GENSCAN_predicted_CDS_4|3711_bp
atggaatgccttttgcaagaaaaatatttctttaagagacaagctgttgctacttcagat
gaagtggtgaactatgacaatgtagtggacacaggttctgaaacagatgaggaagacaag
cttcatattgctgaggatgacggtattgccaaccctctggaccaggagacgagtccagct
agtgtgcccaaccatgagtcctccccacacgtgagccaagctctgttgccaagagaggaa
gaggaagatgaaataagggagggtggagtggaacacccctggcacaacaacgagattcta
caagcctctgtagatggtccagaagaaatgaaggaagactatgacactatggggccagaa
gccacgatccagaccgcaattaacaatggtacagtgaagaatgcaaattgcacatcagat
tttgaggaatactttgccaaaagaaaactggaggaacgcgatggtcatgcagtcagcatc
gaggagtaccttcagcgcagtgacacagccattatttacccagaagcccctgaggagctg
tctcgccttggcacgccagaggccaatgggcaagaagaaaatgacctgccacctggaact
ccagatgcttttgcccaactgctgacctgcccctactgcgaccggggctacaagcgcttg
acatcactgaaggagcacatcaagtaccgccacgagaagaatgaagagaacttttcctgc
cctctctgtagctacacgtttgcctaccgcacccagctcgagcggcatatggtgacacac
aagccagggacagatcagcaccaaatgctaacccaaggagcaggtaatcgcaagttcaaa
tgcacagagtgtggcaaggccttcaaatataaacaccatctgaaagaacacctgcgaatt
cacagtgattcttctcttggtagacaattgcaattgttatctaatcaaggaaatgtaacg
gtaattttaattatcattttaggtgaaaaaccttacgagtgcccaaactgcaagaaacgt
ttctcccattctggttcctacagttcgcacatcagcagcaagaaatgtattggtttaatc
tctgtaaatggccgaatgagaaacaatatcaagacgggttcttcccctaattctgtttct
tcttctcctactaattcagccattacccagttaagaaacaagttggagaatggaaaacca
cttagtatgtctgaacagacaggcttacttaaaattaaaacagaaccactagacttcaat
gactataaagttcttatggctacacacgggtttagtggcactagtccctttatgaatggt
gggcttggagccaccagccctttaggagttcatccatctgctcagagtccaatgcagcac
ttaggtgtagggatggaagcccctttacttgggtttcccaccatgaatagtaatttaagt
gaggtacaaaaggttctacagattgtggacaatactgtttccaggcaaaaaatggactgc
aaggctgaagaaatttcaaagttgaaaggttatcacatgaaggatccatgctctcaacct
gaggaacaaggagttacttctcctaatattccgcctgtcggtcttccggtagtgagtcat
aatggtgccactaaaagtattattgactatacgttggaaaaagtcaatgaagccaaagct
tgcctccagagcttgactactgactcaaggagacagatcagtaatataaagaaagagaag
ctacgtactttaatagatttggtcactgatgacaaaatgattgagaaccacaacatatcc
actccattttcatgccagttctgtaaagaaagttttcctggccccatccctttgcatcag
catgaacgttacctttgtaagatgaatgaagagatcaaggcggtcctgcagcctcatgaa
aacatagtccccaacaaagccggagtttttgttgataataaagccctcctcttgtcatct
gtactttctgagaaaggaatgacaagccccatcaacccatacaaggaccacatgtctgta
ctcaaagcatactatgctatgaacatggagcccaactccgatgaactgctgaaaatttcc
attgctgtgggccttcctcaggaatttgtgaaggaatggtttgaacaacgaaaagtctac
cagtactcaaattccaggtccccatccctggaaagaagctccaagccgttagctcccaac
agtaaccctcccacaaaagactctttattacccaggtctcctgtaaaacctatggactcc
ataacatcaccatctatagcagaactccacaacagtgttacgaattgtgatcctcctctc
aggctaacaaaaccttcccattttaccaatattaaaccagttgaaaaattggaccactcc
aggagtaatactccttctcccttaaatctttcctccacatcttctaaaaactcccacagt
agttcatacactccaaacagcttctcttctgaggagctccaggctgagcctttagacttg
tcattaccaaaacaaatgaaagaacccaaaagtattatagccacaaagaacaaaacaaaa
gctagtagcatcagtttagatcataacagtgtttcttcctcatctgaaaactcagatgag
cctctgaacttgacttttatcaagaaggaattttcaaattcaaataatctggacaacaaa
agcactaacccagtgttcagcatgaacccatttagtgccaaacctttatacacagctctt
ccacctcaaagcgcatttccccctgctactttcatgccaccagtccagaccagtattcct
gggctacgaccatacccaggactggatcagatgagcttcctaccacatatggcctacacc
tacccaactggagcagctacttttgctgatatgcagcaaaggagaaagtaccagcggaaa
caaggatttcagggagaattgcttgatggagcacaagactacatgtcaggcctagatgat
atgacagactccgactcctgtctgtctcgcaaaaagatcaagaagacagagagtggcatg
tatgcatgtgacttatgtgacaagacattccagaaaagcagttcccttctgcgacataaa
tacgaacacacaggaaaaagaccacatcagtgtcagatttgtaagaaagcgtttaaacac
aagcaccaccttatcgagcactcaaggcttcactcgggcgagaagccctatcagtgtgat
aaatgtggcaagcgcttctcacactcgggctcgtactcgcagcacatgaatcacaggtat
tcctactgcaagcgggaggcggaggagcgggaagcggcggagcgcgaggcgcgcgagaaa
gggcacttggaacccaccgagctgctgatgaaccgggcttacttgcagagcattacccct
caggggtactctgactcggaggagagggagagtatgccgagggatggcgagagcgagaag
gagcacgagaaagaaggcgaggatggctacgggaagctgggcagacaggatggcgacgag
gagttcgaggaggaagaggaagaaagtgaaaataaaagtatggatacggatcccgaaacg
atacgagatgaagaagagactggagatcactccatggacgatagttcggaggatgggaaa
atggaaaccaaatcagaccacgaggaagacaatatggaagatggcatgtaa

>gi568815596r:144289454_144617350|GENSCAN_predicted_peptide_5|55_aa
MYAKSEGTQDQKIQYARVYREKIEMTVLSSGGALLRTARTRPINEPVYLQTMTQD

>gi568815596r:144289454_144617350|GENSCAN_predicted_CDS_5|168_bp
atgtatgccaagagtgaagggacccaggaccagaaaattcagtatgcccgggtgtataga
gagaaaatagagatgacagtgctgtcttcaggaggggcgctgctcaggactgcccggaca
aggccaattaatgagcctgtgtatttgcaaacgatgacccaggattag

>gi568815596r:144289454_144617350|GENSCAN_predicted_peptide_6|56_aa
MAAKEPLCSAVSVIRALRTPRVRIDTIDRNSSEEAVMVYHASDVRILAGPLALLWK

>gi568815596r:144289454_144617350|GENSCAN_predicted_CDS_6|171_bp
atggctgctaaggagccgttatgtagtgccgtgtcagtgatccgtgcgttgaggactccc
cgagtacgcattgacacgatagaccggaacagctcagaagaagctgttatggtctatcat
gccagtgatgtgcggatattggcagggcctctggcccttctgtggaaatga

>gi568815596r:144289454_144617350|GENSCAN_predicted_peptide_7|276_aa
MSLSVRSKRQNKPYMEKQGPITASRRPGNGSQCAERVGTSGSETHLGKVLEISANPRTAT
IPKGNAQFIMNGLKANSALTAKFLVFKFIEPACCRSRAPSPCELPSDPLLSMKQPIMADG
PRCKRRKQANPRRKNEDLQNLQKEIIPTPSTPPIHPHDPSNEGFRQIYFSKHLWTLAGKV
GVCLQKEAFVKGYLFPMVQNRLDITVHQFQGFPWRYLHQISPVKLQVEIGRPETHRLLPP
TNCDDDDFIFQQSVHFQRGWVQTSSKNGFLDFLQDL

>gi568815596r:144289454_144617350|GENSCAN_predicted_CDS_7|831_bp
atgagcctaagtgttaggtccaaaaggcaaaataagccatacatggaaaaacaagggcca
atcacagcatccaggaggcctggaaatgggtcacaatgtgcagagcgggtgggcacaagt
gggtcagaaacacatctgggaaaggtacttgaaattagcgcaaaccccaggacagctaca
attccaaaagggaatgctcagttcattatgaatggtcttaaagcaaacagtgctctgaca
gccaaattcctggtcttcaaatttatcgagcctgcgtgctgccgaagcagggcgccgagt
ccatgcgaactgccatctgatccgctcttatcaatgaagcagccgatcatggcggatggc
ccccggtgcaagaggcgcaaacaagccaatcccaggaggaaaaacgaagatttacagaat
ttacaaaaagagattatccctacaccttccacccctcctatccacccccatgacccaagc
aatgaaggatttaggcagatttacttcagtaaacacctttggacacttgcggggaaagtg
ggagtctgtttgcaaaaggaggcttttgttaaaggttaccttttcccgatggtgcaaaat
cgacttgacataactgttcatcagtttcagggttttccctggaggtatttgcatcaaatc
agcccagtcaagcttcaagttgaaattggcaggccagaaactcacaggctcttgcctccc
actaactgtgatgatgacgatttcatattccagcagtcagttcactttcagcgagggtgg
gtgcagacttcatcaaagaatggcttcctggatttccttcaggacctgtga

>gi568815596r:144289454_144617350|GENSCAN_predicted_peptide_8|105_aa
METTDSFVDSNLRPNFNNTAVHMAFAERQHRSQDEFVFIDKSEEYLWPSKARGSNSEEVS
GHRCSPSLYLANERQPYSEPDVRLLENEHKLVYFKPNGKFYMQGP

>gi568815596r:144289454_144617350|GENSCAN_predicted_CDS_8|318_bp
atggagacaacagactctttcgttgactcaaatttacggccaaattttaataacacagct
gtccatatggcatttgcagagaggcagcataggtctcaagacgagtttgtctttatcgat
aagagtgaagagtatttgtggccttcaaaagccagaggctccaactctgaggaggtatct
ggtcatcgctgttccccgagtttgtaccttgcaaatgagaggcagccttattcagaacca
gatgtaaggctcctagagaatgagcataagctggtgtactttaagcctaatgggaagttt
tatatgcaagggccttga

>gi568815596r:144289454_144617350|GENSCAN_predicted_peptide_9|78_aa
MVGYEDGEHEKGQRGLPSQEDIAESQEEEGRKHARSSVQEEIRTGVISDLQLSPSVSAAK
KLPFNVVLSSSMLHVSGS

>gi568815596r:144289454_144617350|GENSCAN_predicted_CDS_9|237_bp
atggtgggatatgaagatggagaacatgaaaaaggacaaaggggtttgccttctcaagag
gacattgcagaatctcaggaagaggagggaagaaagcatgctaggagctctgtgcaggag
gagatccgcactggtgttatctctgacctgcagcttagccccagtgtctcagctgccaaa
aagctcccattcaacgttgtgctgagttcatcaatgctccacgtgtcaggatcctaa