GENSCAN 1.0	Date run:  4-Nov-116	Time: 00:39:14

Sequence gi568815578f:1196240_1406051 : 209812 bp : 44.79% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   7235   7412  178  2  1   65   95   107 0.651   9.02
 1.02 Intr +  10630  10733  104  0  2   70   42    72 0.296  -0.23
 1.03 Term +  11294  11510  217  2  1  106   54    38 0.261  -1.18
 1.04 PlyA +  12014  12019    6                               1.05

 2.00 Prom +  14415  14454   40                              -6.16
 2.01 Init +  21869  22241  373  1  1   24   58   220 0.249   9.73
 2.02 Intr +  24616  24867  252  2  0   67   35   132 0.300   3.21
 2.03 Term +  25552  25814  263  2  2   70   55   152 0.539   5.79
 2.04 PlyA +  25833  25838    6                               1.05

 3.00 Prom +  26595  26634   40                              -2.46
 3.01 Init +  29177  29267   91  1  1   69   78    32 0.063  -0.99
 3.02 Intr +  35287  35380   94  2  1   96   22    65 0.054  -0.28
 3.03 Intr +  37846  37952  107  1  2  111   77    27 0.306   3.76
 3.04 Intr +  49452  49520   69  1  0   85   62    54 0.254   1.65
 3.05 Intr +  70057  70243  187  2  1  107   23    83 0.409   2.45
 3.06 Intr +  70415  70573  159  2  0   98   75   104 0.541   9.20
 3.07 Intr +  73325  73369   45  2  0  103   93    40 0.679   3.52
 3.08 Term +  85365  85578  214  0  1   90   47   106 0.465   3.40
 3.09 PlyA +  87917  87922    6                               1.05

 4.04 PlyA -  88127  88122    6                               1.05
 4.03 Term -  88385  88345   41  0  2  114   47    27 0.453  -1.45
 4.02 Intr -  90168  90024  145  0  1  111   59   140 0.835  13.26
 4.01 Init -  91526  91515   12  2  0   64   81     8 0.141  -2.05
 4.00 Prom -  92754  92715   40                              -2.96

 5.00 Prom +  93261  93300   40                              -7.46
 5.01 Init +  99340  99472  133  0  1   94   62   110 0.485   8.89
 5.02 Intr + 100086 100182   97  1  1  110  109    23 0.897   5.67
 5.03 Intr + 100807 101013  207  1  0   39   86   260 0.667  19.09
 5.04 Intr + 104323 104472  150  1  0  103  105   278 0.998  30.28
 5.05 Term + 108639 109815 1177  0  1   79   55  1955 0.993 182.57
 5.06 PlyA + 111807 111812    6                              -3.44

 6.12 PlyA - 111842 111837    6                              -3.84
 6.11 Term - 112340 112040  301  1  1  114   42   122 0.904   4.89
 6.10 Intr - 114652 114561   92  1  2  102   78   176 0.966  16.79
 6.09 Intr - 116269 116098  172  0  1   75  102   322 0.999  32.25
 6.08 Intr - 116523 116348  176  0  2  114  109   224 0.998  25.84
 6.07 Intr - 117259 117101  159  1  0  110   91   167 0.951  19.38
 6.06 Intr - 122179 122079  101  2  2   96   31    48 0.778  -0.27
 6.05 Intr - 122722 122673   50  0  2   60   81    29 0.103  -2.28
 6.04 Intr - 123420 123351   70  1  1  121  109    26 0.130   6.24
 6.03 Intr - 124152 124124   29  2  2   72  111     4 0.020  -1.14
 6.02 Intr - 132947 132846  102  1  0   35  115    86 0.205   5.29
 6.01 Init - 167483 167401   83  2  2   65   70    83 0.300   4.64
 6.00 Prom - 171348 171309   40                              -4.86

 7.07 PlyA - 172768 172763    6                               1.05
 7.06 Term - 176001 175873  129  0  0  114   48   134 0.959  10.18
 7.05 Intr - 179364 179252  113  1  2   97   85    32 0.133   3.90
 7.04 Intr - 196642 196595   48  2  0  102  117    60 0.004   8.95
 7.03 Intr - 196862 196723  140  1  2   30  113    66 0.003   3.41
 7.02 Intr - 197078 196887  192  1  0   89   41    75 0.002   1.51
 7.01 Intr - 197487 197316  172  1  1   53   77    84 0.003   2.80

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 185351 185451  101  1  2   58  114    35 0.864   2.83
S.002 Term + 189319 189427  109  1  1  107   48    74 0.899   3.28
S.003 Sngl + 196737 197099  363  2  0   78   38   266 0.968  14.69


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:1196240_1406051|GENSCAN_predicted_peptide_1|166_aa
XDLARTCCQSERVGGMYKSKIPRAQNQVSVKVTPKNTEMKIAEEPSPSLGQTLEWLRKEL
SEMQIQDQSLLLTLRHLHSVLEELRADSAHWEDARKPSHSPSSDNILGPVTTLAIGMGIL
PGLANDIIHGCPKKMIGPMDGHVNQQSQSPTFPEIATWKLFLLHSG

>gi568815578f:1196240_1406051|GENSCAN_predicted_CDS_1|501_bp
nntgatttggccagaacctgctgccagtctgaaagagttgggggaatgtacaagtcaaag
atccctcgggcccagaaccaggtcagtgtcaaggtcactcctaagaacactgagatgaaa
atagcagaagagcccagcccgagtcttgggcagaccttggagtggctgagaaaggagctg
tctgagatgcagattcaagatcagagtctcctgctcacactgaggcatcttcacagtgtc
ctggaggagctgcgtgcggacagcgcccactgggaggacgccaggaagccttcccattcc
ccttcatctgataacatattaggccctgtaaccaccctggccataggcatgggtatatta
ccaggcctggccaatgatataattcatggttgccctaaaaagatgattggcccaatggat
ggtcatgtgaaccaacagagccagtcaccgaccttccctgagattgctacctggaagctc
tttctattacactcaggctga

>gi568815578f:1196240_1406051|GENSCAN_predicted_peptide_2|295_aa
MEERVSVIEDQMNEMKREEKFREKRVKRNEQSLQEMWDYVKRPNLHLIGVPESDGENGTK
LENTLQDIIQENFPNLARQANIQIQEIQRTPQRDSSRRATPRHIIVRFTKVEMKEKMLRA
AREKVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIISAQNLLKLISNFS
KVSEYKINVRKSQTFLYTNNRQTESQIMKLEKTTLKFTWNQKRAHIAKTILSQKNKAGGV
TLPNFKLYYKATVTKTAWYWYRNRDIDQWNRTEPSEIIPHIYNHLIFDKPDKNKK

>gi568815578f:1196240_1406051|GENSCAN_predicted_CDS_2|888_bp
atggaagaaagggtatcagtgattgaagatcaaatgaatgaaatgaagcgagaagagaag
tttagagaaaaaagagtaaaaagaaatgaacaaagcctccaagaaatgtgggactacgtg
aaaagaccaaatctacatctgattggtgtacctgaaagtgacggagagaatggaaccaag
ttggaaaacactcttcaggatatcatccaggagaacttccccaacctagcaaggcaggcc
aacattcaaattcaggaaatacagagaacgccacaaagagactcctcgagaagagcaact
ccaagacacataattgtcagattcaccaaagttgaaatgaaggaaaaaatgttaagggca
gccagagagaaagtgttggaagttctcgccagggcaatcaggcaagagaaagaaataaag
ggtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgta
tatttagaaaaccccatcatctcagcccaaaacctccttaagctgataagcaacttcagc
aaagtctcagaatacaaaatcaacgtgcgaaaatcacaaacattcctatacaccaataac
agacaaacagagagccaaatcatgaaattggaaaaaactactttaaagttcacatggaac
caaaaaagagcccacattgccaagacaatcctaagccaaaagaacaaagctggaggcgtc
acgctacctaacttcaaactatactacaaggctacagtaaccaaaacagcatggtactgg
taccgaaacagagatatagaccaatggaacagaacagagccctcagaaataataccacac
atctacaaccatctcatctttgacaaacctgacaaaaacaagaaatga

>gi568815578f:1196240_1406051|GENSCAN_predicted_peptide_3|321_aa
MGPRPHPCHAPAQVSQVRAPGQSRRLRTRTGLVDLPKENFEASYNAITLPEEFHDFDTQN
MNAIDVSEHFTQNQSRPEEITLRENFDNDLIFQAESFDRFFFPFARDSSSSGGRNPVMVL
APAPASTQLAASCRGSGEQFGGPCRAAEAMEASAGDDKDPGDLRAHRPAAPAAVQSAECQ
GVGSLIRARRLQQRLQRRCAKPGRSGASRRGCGGPVDSGEEAAAERGAGPALHRGRWEQG
FGEEEAVNNLRMWNAPPQAAPGYLENNYAPVLQSSAQGHQLLSSAEKPLSLLPNPSVTRA
SIMGLLAEEEVAHNRHLVNID

>gi568815578f:1196240_1406051|GENSCAN_predicted_CDS_3|966_bp
atggggcccaggccccatccctgtcatgcccctgctcaggtgtctcaggtccgagcgcca
ggacaaagccggagactgcgcactaggaccggactggttgaccttccaaaagagaatttt
gaagcatcttacaatgctatcacattgccagaagaatttcatgattttgacacccaaaat
atgaatgctattgatgtttcagaacactttactcagaaccaaagcagaccagaagaaatc
actcttagagaaaattttgacaatgatctaattttccaagctgagagctttgacaggttc
ttcttcccttttgcccgtgacagctccagcagtggtggcaggaatcctgtcatggtcctc
gccccagccccggcgagcacccagctagccgcctcctgcaggggctcgggagagcaattc
ggcggcccctgcagggcagctgaagccatggaagcctccgcaggtgatgacaaggacccc
ggggatctccgggcccaccgcccagctgcacccgccgcagtccagagtgccgagtgccag
ggggtggggtcgctgatcagggccaggcggctgcagcagcgactgcagaggcgctgcgcc
aagccgggccggagtggtgcgagccggcggggctgcggagggccagtggactcaggtgag
gaggccgcggcggagcggggagctggccctgcgctgcaccgcggcaggtgggaacagggg
tttggagaagaagaagctgtgaacaatttacgaatgtggaatgctcctccacaggcagct
cctgggtacctggagaacaactatgcacctgtcctccagagctctgctcaagggcaccag
cttctgagttctgcagagaagcccctctctcttctgcccaacccctcagtgacacgtgct
tcgattatgggactattggcagaggaggaagtggcacacaatagacacttggtaaatatt
gactga

>gi568815578f:1196240_1406051|GENSCAN_predicted_peptide_4|65_aa
MRKMLQLPCCPQQLIPVHLIPRGTSHAMLNSFTFNKIQGLNNAQCGSHLLEEGLCSKVTL
SVNLL

>gi568815578f:1196240_1406051|GENSCAN_predicted_CDS_4|198_bp
atgaggaaaatgctgcagctgccctgctgtcctcagcagctgatccctgtccacctgatt
ccccgtggtacttcccatgccatgctgaattctttcaccttcaataagatccagggcctc
aacaatgcccagtgtggctcacacttgctggaagagggtctttgctccaaggtcaccctc
tcagtgaatcttctctga

>gi568815578f:1196240_1406051|GENSCAN_predicted_peptide_5|587_aa
MPVCRMGAGGPGCMSCVMGWLPEHVHGDACGMSWNGRDMVPSRVAPGIPPIPPLTRTHSL
MAMSLPGSRRTSAGSRSGGTLGRSGLAVFAQCPQLPASQNEHLPLLPASRRTSPPVSVRD
AYGTSSLSSSSNSGSYKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIR
HLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIKQLKQ
VIDTVKNNLIDKDKGLQKYFVDINIQNKKLETLLHSMEVAQNGMAKEDGTGESAGGSPAR
SLTRSSTYTKLSDPAVCGDRQPGDPSSGSAEDGADSGFAAADDTLSRTDALEASSLLSSG
VDCGTEETSLHSSFGLGPRFPASNTYEKLLCGMEAGVQASCMQERAIQTDFVQYQPDLDT
ILEKVTQAQVCGTDPESGDRCPELDAHPSGPRDPNSAVVVTVGDELEAPEPITRGPTPQR
PGANPNPGQSVSVVCPMEEEEEAAVAEKEPKSYWSRHYIVDLLAVVVPAVPTVAWLCRSQ
RRQGQPIYNISSLLRGCCTVALHSIRRISCRSLSQPSPSPAGGGSQL

>gi568815578f:1196240_1406051|GENSCAN_predicted_CDS_5|1764_bp
atgcctgtgtgccgcatgggtgcgggaggacctggctgcatgtcctgcgtcatgggctgg
ctgcctgagcacgttcatggagacgcgtgtggcatgtcttggaatggcagggacatggta
ccttctcgtgttgcccccgggataccgcccatcccaccccttactcggacccacagcctc
atggccatgtccctgccaggaagtagacggacctctgctggatcacgcagcgggggcact
ttgggccgcagcggcctggcagtgttcgcccagtgtccgcagctgcccgccagccagaac
gagcacctgcctcttcttcctgcctccaggcgcacctctccacctgtgagcgtgcgggat
gcctacggcacctcttcgctcagcagcagcagcaattctggctcctacaagggcagtgac
agcagtcccacgccaaggcgctccatgaaatacacgctgtgcagtgacaaccatggcatc
aagcccccgaccccggagcagtacctgacccccctgcagcagaaggaggtgtgcatccgg
cacctgaaagcccggctgaaggacacacaggaccggctccaggaccgggacacagagatt
gatgacctgaagacgcagctgtcacgcatgcaggaggactggattgaggaggagtgccac
cgcgtggaggcccagctggccctgaaggaggcccgaaaggagatcaagcagctcaagcag
gtcatcgacactgtcaagaacaacctgattgacaaggacaaggggctgcagaagtacttc
gtggacatcaacatccagaacaagaagctggagacgctgctgcacagcatggaggtggcc
cagaatggcatggccaaggaggatggcactggggagtcagccggtgggtcccctgcccgc
tccctcacccgcagctccacctacaccaagctgagtgacccggctgtctgtggtgaccgc
cagccgggtgatccctccagcggctctgctgaggatggggcagacagtggctttgcagca
gccgatgacacactgagccggacggacgcgctggaagccagcagcctgctgtcgtcgggg
gtggactgtggcaccgaggagacctcgctgcacagctccttcggcctgggcccccgcttc
cctgccagcaacacctatgagaagctgctgtgtggcatggaggctggtgtgcaggccagc
tgcatgcaggagcgtgccatccagacagacttcgtgcagtaccagcctgaccttgacacc
atcctggagaaagtgacccaggcccaggtctgtgggacagaccctgagtcaggggacagg
tgcccagagctggatgcccacccttcagggcccagagaccccaactcagcagtggtggtg
acagtgggtgatgagctagaggccccagagcccatcacccgtggacccaccccacagcgg
cctggtgccaaccccaaccctggccagtcggtgagcgtggtgtgccccatggaagaggag
gaggaggctgccgtggctgagaaggagcccaagagctactggagccgccactacatcgtg
gatctgctggctgtggtggtgccggccgtgcccacggtggcctggctttgccgctcccag
cggcgccagggccagcccatctacaacatcagctccctgctgcggggctgctgcactgtg
gccttgcactccatccgcaggatcagctgccgctcgctgagccagccgagtcccagccca
gcgggcggcggctcccagctctga

>gi568815578f:1196240_1406051|GENSCAN_predicted_peptide_6|444_aa
MGPSEAEFAAAAVLYSMQQNGCQLLLGRSGSQLRDRATFQGGKQIQQRQQLEKVVEQHLA
CRGPKSGPSHSGPGQSLTQDASPASPGNSHFPTTSSGGWKPKIKVLANSVSVLYPNLAEL
ENYMGLSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIH
LCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQ
VVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNH
YVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKAWHLSSSCRTSTAWS
LTGSLHLCIDAGSEHTHMHSRAGPGPPATTVPGPVPGLSGELLPPLTRRKAHRRPQESPR
KRGPSTLWARALVTHTGGLRPEQE

>gi568815578f:1196240_1406051|GENSCAN_predicted_CDS_6|1335_bp
atgggcccatcagaggctgagtttgcagcagcagctgtcctgtacagcatgcagcaaaac
ggctgtcagctcttattaggaagatcaggaagccagctgagagacagggctacgtttcag
ggagggaaacagattcagcagcggcagcagctggagaaggtcgtggagcagcaccttgcc
tgcagaggacctaaaagtggaccaagccattcaggcccaggtcagagcctcacccaagat
gccagccctgccagtccaggcaacagccatttccccaccaccagctctggaggctggaag
cccaagatcaaggttctggccaattcagtttctgttttgtacccaaacttggcagaactg
gaaaattatatgggtctttccctctccagccaagaagtccaggagagcctgcttcagatt
ccagagggtgacagtacagcggtctcgggccccgggcccggccagatggtggcaccggta
accgggtacagcctgggcgtgcggcgagctgagatcaagcccggggtgcgcgagatccac
ctgtgcaaggacgagcgcggcaagaccgggctgaggctgcggaaggtcgaccaggggctc
tttgtgcagttggtccaggccaacacccctgcatcccttgtggggctgcgctttggggac
cagctcctgcagattgacgggcgtgactgtgctgggtggagctcgcacaaagcccatcag
gtggtgaagaaggcatcaggcgataagattgtcgtggtggttcgggacaggccgttccag
cggactgtcaccatgcacaaggacagcatgggccacgtcggcttcgtgatcaagaagggg
aagattgtctctctggtcaaagggagttctgcggcccgcaacgggctcctcaccaaccac
tacgtgtgtgaggtggacgggcagaatgttatcgggctgaaggacaaaaagatcatggag
attctggccacggctgggaacgttgtcaccctgaccatcatccccagtgtgatctacgag
cacatggtcaaaaaggcatggcacctgagcagcagctgccgcacctccaccgcctggagc
ctcacaggcagcctgcacctttgcatagatgcgggatctgagcacacacacatgcactcc
agagctgggccagggccaccggccaccacagtcccagggcctgtcccagggctgagtggg
gagctgctccctccactgacaagaagaaaagcccatcgaaggccccaggagagcccccga
aagagaggaccctcaacactgtgggccagggccctcgtgacccacaccggtggtctcagg
ccagaacaggagtag

>gi568815578f:1196240_1406051|GENSCAN_predicted_peptide_7|264_aa
XGQQAISAAVSGNIGSWSRRCVPPVLFPWPLDSDSVGHKKSDPIRIINFHMLNKNVCMEM
LNRLEAQRKGRRTKQVTRQTQLYPEASGLPEVSGLLGFRSLFRRPGFPGRRAPCGARTQG
WARRAEVLGRAVEPPPGRCWSTPPVAPPARSASAAAMGVQVETISPGDGRTFPKRGQTCV
VHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYG
ATGHPGIIPPHATLVFDVELLKLE

>gi568815578f:1196240_1406051|GENSCAN_predicted_CDS_7|795_bp
nggggacagcaggccatttccgcagcagttagtggaaatattggttcttggagcaggcgc
tgcgtgcctccagtgcttttcccctggcccctggattctgattccgttgggcataagaag
agtgacccaattcgtattatcaactttcacatgctcaataagaatgtatgcatggagatg
cttaaccggctggaagcacagaggaagggcaggagaacgaagcaagtcacccggcaaaca
cagctgtatccggaggcctccgggcttccggaggtctcggggcttctgggcttccggtcc
ctcttccggaggcctgggtttccgggacgtcgcgcgccgtgtggggcgcgcacgcagggc
tgggcgcgacgcgccgaggtactaggcagagccgtggaaccgccgccaggtcgctgttgg
tccacgccgcccgtcgcgccgcccgcccgctcagcgtccgccgccgccatgggagtgcag
gtggaaaccatctccccaggagacgggcgcaccttccccaagcgcggccagacctgcgtg
gtgcactacaccgggatgcttgaagatggaaagaaatttgattcctcccgggacagaaac
aagccctttaagtttatgctaggcaagcaggaggtgatccgaggctgggaagaaggggtt
gcccagatgagtgtgggtcagagagccaaactgactatatctccagattatgcctatggt
gccactgggcacccaggcatcatcccaccacatgccactctcgtcttcgatgtggagctt
ctaaaactggaatga