Result of FASTA (ccds) for pF1KA0196
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0196, 1159 aa
  1>>>pF1KA0196 1159 - 1159 aa - 1159 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6653+/-0.00135; mu= 20.0185+/- 0.081
 mean_var=68.4244+/-13.764, 0's: 0 Z-trim(98.9): 42  B-trim: 2 in 1/49
 Lambda= 0.155049
 statistics sampled from 5539 (5544) to 5539 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.5), E-opt: 0.2 (0.17), width:  16
 Scan time:  3.240

The best scores are:                                      opt bits E(32554)
CCDS6355.1 WASHC5 gene_id:9897|Hs108|chr8          (1159) 7559 1701.2       0
CCDS83325.1 WASHC5 gene_id:9897|Hs108|chr8         (1011) 6588 1484.0       0


>>CCDS6355.1 WASHC5 gene_id:9897|Hs108|chr8               (1159 aa)
 initn: 7559 init1: 7559 opt: 7559  Z-score: 9129.4  bits: 1701.2 E(32554):    0
Smith-Waterman score: 7559; 100.0% identity (100.0% similar) in 1159 aa overlap (1-1159:1-1159)

               10        20        30        40        50        60
pF1KA0 MLDFLAENNLCGQAILRIVSCGNAIIAELLRLSEFIPAVFRLKDRADQQKYGDIIFDFSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MLDFLAENNLCGQAILRIVSCGNAIIAELLRLSEFIPAVFRLKDRADQQKYGDIIFDFSY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 FKGPELWESKLDAKPELQDLDEEFRENNIEIVTRFYLAFQSVHKYIVDLNRYLDDLNEGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 FKGPELWESKLDAKPELQDLDEEFRENNIEIVTRFYLAFQSVHKYIVDLNRYLDDLNEGV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 YIQQTLETVLLNEDGKQLLCEALYLYGVMLLVIDQKIEGEVRERMLVSYYRYSAARSSAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YIQQTLETVLLNEDGKQLLCEALYLYGVMLLVIDQKIEGEVRERMLVSYYRYSAARSSAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 SNMDDICKLLRSTGYSSQPGAKRPSNYPESYFQRVPINESFISMVIGRLRSDDIYNQVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SNMDDICKLLRSTGYSSQPGAKRPSNYPESYFQRVPINESFISMVIGRLRSDDIYNQVSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 YPLPEHRSTALANQAAMLYVILYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITVNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YPLPEHRSTALANQAAMLYVILYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITVNL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 VDAWEPYKAAKTALNNTLDLSNVREQASRYATVSERVHAQVQQFLKEGYLREEMVLDNIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VDAWEPYKAAKTALNNTLDLSNVREQASRYATVSERVHAQVQQFLKEGYLREEMVLDNIP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 KLLNCLRDCNVAIRWLMLHTADSACDPNNKRLRQIKDQILTDSRYNPRILFQLLLDTAQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KLLNCLRDCNVAIRWLMLHTADSACDPNNKRLRQIKDQILTDSRYNPRILFQLLLDTAQF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 EFILKEMFKQMLSEKQTKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFREIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EFILKEMFKQMLSEKQTKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFREIS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 KQILSLNYDDSTAAGRKTVQLIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTINI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KQILSLNYDDSTAAGRKTVQLIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTINI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 KEEVLITMQIVGDLSFAWQLIDSFTSIMQESIRVNPSMVTKLRATFLKLASALDLPLLRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KEEVLITMQIVGDLSFAWQLIDSFTSIMQESIRVNPSMVTKLRATFLKLASALDLPLLRI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 NQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIIEVPTRLDKDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIIEVPTRLDKDK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 LRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRVAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRVAF
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 ALHRGLIFNPRAKPSELMPKLKELGATMDGFHRSFEYIQDYVNIYGLKIWQEEVSRIINY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ALHRGLIFNPRAKPSELMPKLKELGATMDGFHRSFEYIQDYVNIYGLKIWQEEVSRIINY
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 NVEQECNNFLRTKIQDWQSMYQSTHIPIPKFTPVDESVTFIGRLCREILRITDPKMTCHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NVEQECNNFLRTKIQDWQSMYQSTHIPIPKFTPVDESVTFIGRLCREILRITDPKMTCHI
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 DQLNTWYDMKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKIIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DQLNTWYDMKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKIIL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 RDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWTAYLEAIMKVGQMQILRQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWTAYLEAIMKVGQMQILRQQ
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KA0 IANELNYSCRFDSKHLAAALENLNKALLADIEAHYQDPSLPYPKEDNTLLYEITAYLEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IANELNYSCRFDSKHLAAALENLNKALLADIEAHYQDPSLPYPKEDNTLLYEITAYLEAA
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KA0 GIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNKNLGMVCRKPTDPVDWPPLVLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNKNLGMVCRKPTDPVDWPPLVLGL
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KA0 LTLLKQFHSRYTEQFLALIGQFICSTVEQCTSQKIPEIPADVVGALLFLEDYVRYTKLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LTLLKQFHSRYTEQFLALIGQFICSTVEQCTSQKIPEIPADVVGALLFLEDYVRYTKLPR
             1090      1100      1110      1120      1130      1140

             1150         
pF1KA0 RVAEAHVPNFIFDEFRTVL
       :::::::::::::::::::
CCDS63 RVAEAHVPNFIFDEFRTVL
             1150         

>>CCDS83325.1 WASHC5 gene_id:9897|Hs108|chr8              (1011 aa)
 initn: 6588 init1: 6588 opt: 6588  Z-score: 7956.5  bits: 1484.0 E(32554):    0
Smith-Waterman score: 6588; 100.0% identity (100.0% similar) in 1011 aa overlap (149-1159:1-1011)

      120       130       140       150       160       170        
pF1KA0 GVYIQQTLETVLLNEDGKQLLCEALYLYGVMLLVIDQKIEGEVRERMLVSYYRYSAARSS
                                     ::::::::::::::::::::::::::::::
CCDS83                               MLLVIDQKIEGEVRERMLVSYYRYSAARSS
                                             10        20        30

      180       190       200       210       220       230        
pF1KA0 ADSNMDDICKLLRSTGYSSQPGAKRPSNYPESYFQRVPINESFISMVIGRLRSDDIYNQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ADSNMDDICKLLRSTGYSSQPGAKRPSNYPESYFQRVPINESFISMVIGRLRSDDIYNQV
               40        50        60        70        80        90

      240       250       260       270       280       290        
pF1KA0 SAYPLPEHRSTALANQAAMLYVILYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SAYPLPEHRSTALANQAAMLYVILYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITV
              100       110       120       130       140       150

      300       310       320       330       340       350        
pF1KA0 NLVDAWEPYKAAKTALNNTLDLSNVREQASRYATVSERVHAQVQQFLKEGYLREEMVLDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NLVDAWEPYKAAKTALNNTLDLSNVREQASRYATVSERVHAQVQQFLKEGYLREEMVLDN
              160       170       180       190       200       210

      360       370       380       390       400       410        
pF1KA0 IPKLLNCLRDCNVAIRWLMLHTADSACDPNNKRLRQIKDQILTDSRYNPRILFQLLLDTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 IPKLLNCLRDCNVAIRWLMLHTADSACDPNNKRLRQIKDQILTDSRYNPRILFQLLLDTA
              220       230       240       250       260       270

      420       430       440       450       460       470        
pF1KA0 QFEFILKEMFKQMLSEKQTKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QFEFILKEMFKQMLSEKQTKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFRE
              280       290       300       310       320       330

      480       490       500       510       520       530        
pF1KA0 ISKQILSLNYDDSTAAGRKTVQLIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ISKQILSLNYDDSTAAGRKTVQLIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTI
              340       350       360       370       380       390

      540       550       560       570       580       590        
pF1KA0 NIKEEVLITMQIVGDLSFAWQLIDSFTSIMQESIRVNPSMVTKLRATFLKLASALDLPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NIKEEVLITMQIVGDLSFAWQLIDSFTSIMQESIRVNPSMVTKLRATFLKLASALDLPLL
              400       410       420       430       440       450

      600       610       620       630       640       650        
pF1KA0 RINQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIIEVPTRLDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 RINQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIIEVPTRLDK
              460       470       480       490       500       510

      660       670       680       690       700       710        
pF1KA0 DKLRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DKLRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRV
              520       530       540       550       560       570

      720       730       740       750       760       770        
pF1KA0 AFALHRGLIFNPRAKPSELMPKLKELGATMDGFHRSFEYIQDYVNIYGLKIWQEEVSRII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AFALHRGLIFNPRAKPSELMPKLKELGATMDGFHRSFEYIQDYVNIYGLKIWQEEVSRII
              580       590       600       610       620       630

      780       790       800       810       820       830        
pF1KA0 NYNVEQECNNFLRTKIQDWQSMYQSTHIPIPKFTPVDESVTFIGRLCREILRITDPKMTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NYNVEQECNNFLRTKIQDWQSMYQSTHIPIPKFTPVDESVTFIGRLCREILRITDPKMTC
              640       650       660       670       680       690

      840       850       860       870       880       890        
pF1KA0 HIDQLNTWYDMKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 HIDQLNTWYDMKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKI
              700       710       720       730       740       750

      900       910       920       930       940       950        
pF1KA0 ILRDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWTAYLEAIMKVGQMQILR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ILRDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWTAYLEAIMKVGQMQILR
              760       770       780       790       800       810

      960       970       980       990      1000      1010        
pF1KA0 QQIANELNYSCRFDSKHLAAALENLNKALLADIEAHYQDPSLPYPKEDNTLLYEITAYLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QQIANELNYSCRFDSKHLAAALENLNKALLADIEAHYQDPSLPYPKEDNTLLYEITAYLE
              820       830       840       850       860       870

     1020      1030      1040      1050      1060      1070        
pF1KA0 AAGIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNKNLGMVCRKPTDPVDWPPLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AAGIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNKNLGMVCRKPTDPVDWPPLVL
              880       890       900       910       920       930

     1080      1090      1100      1110      1120      1130        
pF1KA0 GLLTLLKQFHSRYTEQFLALIGQFICSTVEQCTSQKIPEIPADVVGALLFLEDYVRYTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GLLTLLKQFHSRYTEQFLALIGQFICSTVEQCTSQKIPEIPADVVGALLFLEDYVRYTKL
              940       950       960       970       980       990

     1140      1150         
pF1KA0 PRRVAEAHVPNFIFDEFRTVL
       :::::::::::::::::::::
CCDS83 PRRVAEAHVPNFIFDEFRTVL
             1000      1010 




1159 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:31:46 2016 done: Fri Nov  4 00:31:47 2016
 Total Scan time:  3.240 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
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