Result of FASTA (omim) for pF1KB9506
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9506, 442 aa
  1>>>pF1KB9506 442 - 442 aa - 442 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.8417+/-0.000368; mu= -13.1642+/- 0.023
 mean_var=366.2616+/-76.131, 0's: 0 Z-trim(123.1): 85  B-trim: 34 in 1/58
 Lambda= 0.067016
 statistics sampled from 42291 (42386) to 42291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.497), width:  16
 Scan time: 11.820

The best scores are:                                      opt bits E(85289)
NP_055469 (OMIM: 186357,601665) syndecan-3 precurs ( 442) 2855 289.7   1e-77
XP_011540765 (OMIM: 186357,601665) PREDICTED: synd ( 431) 2557 260.9 4.6e-69
XP_011540766 (OMIM: 186357,601665) PREDICTED: synd ( 430) 2549 260.2 7.9e-69
XP_011540768 (OMIM: 186357,601665) PREDICTED: synd ( 400) 2543 259.6 1.1e-68
NP_002988 (OMIM: 186355) syndecan-1 precursor [Hom ( 310)  343 46.8 9.7e-05
NP_001006947 (OMIM: 186355) syndecan-1 precursor [ ( 310)  343 46.8 9.7e-05
XP_005262679 (OMIM: 186355) PREDICTED: syndecan-1  ( 292)  338 46.3 0.00013
XP_005262678 (OMIM: 186355) PREDICTED: syndecan-1  ( 305)  338 46.3 0.00013
XP_005262677 (OMIM: 186355) PREDICTED: syndecan-1  ( 334)  338 46.3 0.00014
NP_775082 (OMIM: 602372) zonadhesin isoform 6 prec (2721)  302 43.5  0.0085
NP_003377 (OMIM: 602372) zonadhesin isoform 3 prec (2812)  302 43.5  0.0087


>>NP_055469 (OMIM: 186357,601665) syndecan-3 precursor [  (442 aa)
 initn: 2855 init1: 2855 opt: 2855  Z-score: 1516.4  bits: 289.7 E(85289): 1e-77
Smith-Waterman score: 2855; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442)

               10        20        30        40        50        60
pF1KB9 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
              370       380       390       400       410       420

              430       440  
pF1KB9 LEEPKQASVTYQKPDKQEEFYA
       ::::::::::::::::::::::
NP_055 LEEPKQASVTYQKPDKQEEFYA
              430       440  

>>XP_011540765 (OMIM: 186357,601665) PREDICTED: syndecan  (431 aa)
 initn: 2543 init1: 2543 opt: 2557  Z-score: 1360.9  bits: 260.9 E(85289): 4.6e-69
Smith-Waterman score: 2557; 97.1% identity (97.3% similar) in 415 aa overlap (28-442:18-431)

               10        20        30        40        50        60
pF1KB9 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
                                  :   :::: :     : . ::::::::::::::
XP_011           MSCRALCWCWGHSSEQDRHKTLPPLELTR-HWRLGEAQRWRSENFERPVD
                         10        20         30        40         

               70        80        90       100       110       120
pF1KB9 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
      50        60        70        80        90       100         

              130       140       150       160       170       180
pF1KB9 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
     110       120       130       140       150       160         

              190       200       210       220       230       240
pF1KB9 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
     170       180       190       200       210       220         

              250       260       270       280       290       300
pF1KB9 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
     230       240       250       260       270       280         

              310       320       330       340       350       360
pF1KB9 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
     290       300       310       320       330       340         

              370       380       390       400       410       420
pF1KB9 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
     350       360       370       380       390       400         

              430       440  
pF1KB9 LEEPKQASVTYQKPDKQEEFYA
       ::::::::::::::::::::::
XP_011 LEEPKQASVTYQKPDKQEEFYA
     410       420       430 

>>XP_011540766 (OMIM: 186357,601665) PREDICTED: syndecan  (430 aa)
 initn: 2545 init1: 2545 opt: 2549  Z-score: 1356.7  bits: 260.2 E(85289): 7.9e-69
Smith-Waterman score: 2549; 96.0% identity (96.4% similar) in 421 aa overlap (22-442:12-430)

               10        20        30        40        50        60
pF1KB9 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
                            : : : : . : :      :.  : ::::::::::::::
XP_011           MTTQTQSLPPGAIGGGDRHIPLKPGNKP--ANFQAVAQRWRSENFERPVD
                         10        20          30        40        

               70        80        90       100       110       120
pF1KB9 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
       50        60        70        80        90       100        

              130       140       150       160       170       180
pF1KB9 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
      110       120       130       140       150       160        

              190       200       210       220       230       240
pF1KB9 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
      170       180       190       200       210       220        

              250       260       270       280       290       300
pF1KB9 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
      230       240       250       260       270       280        

              310       320       330       340       350       360
pF1KB9 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
      290       300       310       320       330       340        

              370       380       390       400       410       420
pF1KB9 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
      350       360       370       380       390       400        

              430       440  
pF1KB9 LEEPKQASVTYQKPDKQEEFYA
       ::::::::::::::::::::::
XP_011 LEEPKQASVTYQKPDKQEEFYA
      410       420       430

>>XP_011540768 (OMIM: 186357,601665) PREDICTED: syndecan  (400 aa)
 initn: 2543 init1: 2543 opt: 2543  Z-score: 1354.0  bits: 259.6 E(85289): 1.1e-68
Smith-Waterman score: 2543; 100.0% identity (100.0% similar) in 396 aa overlap (47-442:5-400)

         20        30        40        50        60        70      
pF1KB9 AGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELD
                                     ::::::::::::::::::::::::::::::
XP_011                           MGPQAQRWRSENFERPVDLEGSGDDDSFPDDELD
                                         10        20        30    

         80        90       100       110       120       130      
pF1KB9 DLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTL
           40        50        60        70        80        90    

        140       150       160       170       180       190      
pF1KB9 EPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPF
          100       110       120       130       140       150    

        200       210       220       230       240       250      
pF1KB9 TATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRP
          160       170       180       190       200       210    

        260       270       280       290       300       310      
pF1KB9 RALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGD
          220       230       240       250       260       270    

        320       330       340       350       360       370      
pF1KB9 FELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQ
          280       290       300       310       320       330    

        380       390       400       410       420       430      
pF1KB9 KSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDK
          340       350       360       370       380       390    

        440  
pF1KB9 QEEFYA
       ::::::
XP_011 QEEFYA
          400

>>NP_002988 (OMIM: 186355) syndecan-1 precursor [Homo sa  (310 aa)
 initn: 300 init1: 213 opt: 343  Z-score: 206.1  bits: 46.8 E(85289): 9.7e-05
Smith-Waterman score: 399; 33.8% identity (57.8% similar) in 325 aa overlap (135-442:16-310)

          110       120       130       140       150       160    
pF1KB9 LAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMA
                                     .:.::   .:.:..: : .. .   : ...
NP_002                MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFS
                              10        20        30        40     

          170       180       190       200       210       220    
pF1KB9 TTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARA
        ..: .  :        :..  ::::      :   ..: :.      :  : ..:.. .
NP_002 GSGAGALQD-------ITLSQQTPSTWKD---TQLLTAIPTSPE----PTGLEATAASTS
          50               60           70            80        90 

          230       240       250        260        270       280  
pF1KB9 TTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPR-ALPRP-ATTQEPDIPERSTLPLGTTA
       : : . .:    ::.      :..    :.: . : :::  ::: :   . ::   .:::
NP_002 TLPAGEGPKEGEAVV-----LPEVEPGLTAREQEATPRPRETTQLPTTHQASTTT-ATTA
             100            110       120       130       140      

            290       300       310        320       330       340 
pF1KB9 PGPTEVAQTPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAA
         :.    :  :.  .   . :  .:  .::: .:.. :. :   : .:.: .:  ::..
NP_002 QEPA----TSHPHRDMQPGHHETSTP--AGPSQADLHTPHTEDGGP-SATERAAEDGASS
             150       160         170       180        190        

             350                   360        370       380        
pF1KB9 KASSPPGTLPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVA
       .  .  :.  .       :   .     :   ... .:.:...:.   ...:.::::: .
NP_002 QLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGG
      200       210       220       230       240          250     

      390       400       410       420        430       440  
pF1KB9 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
       ::.::.:: .::. :: ...:::::::::::.:::::::.  .:::: :::::::
NP_002 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
         260       270       280       290       300       310

>>NP_001006947 (OMIM: 186355) syndecan-1 precursor [Homo  (310 aa)
 initn: 300 init1: 213 opt: 343  Z-score: 206.1  bits: 46.8 E(85289): 9.7e-05
Smith-Waterman score: 399; 33.8% identity (57.8% similar) in 325 aa overlap (135-442:16-310)

          110       120       130       140       150       160    
pF1KB9 LAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMA
                                     .:.::   .:.:..: : .. .   : ...
NP_001                MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFS
                              10        20        30        40     

          170       180       190       200       210       220    
pF1KB9 TTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARA
        ..: .  :        :..  ::::      :   ..: :.      :  : ..:.. .
NP_001 GSGAGALQD-------ITLSQQTPSTWKD---TQLLTAIPTSPE----PTGLEATAASTS
          50               60           70            80        90 

          230       240       250        260        270       280  
pF1KB9 TTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPR-ALPRP-ATTQEPDIPERSTLPLGTTA
       : : . .:    ::.      :..    :.: . : :::  ::: :   . ::   .:::
NP_001 TLPAGEGPKEGEAVV-----LPEVEPGLTAREQEATPRPRETTQLPTTHQASTTT-ATTA
             100            110       120       130       140      

            290       300       310        320       330       340 
pF1KB9 PGPTEVAQTPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAA
         :.    :  :.  .   . :  .:  .::: .:.. :. :   : .:.: .:  ::..
NP_001 QEPA----TSHPHRDMQPGHHETSTP--AGPSQADLHTPHTEDGGP-SATERAAEDGASS
             150       160         170       180        190        

             350                   360        370       380        
pF1KB9 KASSPPGTLPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVA
       .  .  :.  .       :   .     :   ... .:.:...:.   ...:.::::: .
NP_001 QLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGG
      200       210       220       230       240          250     

      390       400       410       420        430       440  
pF1KB9 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
       ::.::.:: .::. :: ...:::::::::::.:::::::.  .:::: :::::::
NP_001 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
         260       270       280       290       300       310

>>XP_005262679 (OMIM: 186355) PREDICTED: syndecan-1 isof  (292 aa)
 initn: 299 init1: 213 opt: 338  Z-score: 203.8  bits: 46.3 E(85289): 0.00013
Smith-Waterman score: 373; 34.4% identity (57.7% similar) in 317 aa overlap (143-442:6-292)

            120       130       140       150       160       170  
pF1KB9 VLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTG
                                     .:.:..: : .. .   : ... ..: .  
XP_005                          MGDEQIVATNLPPEDQDGSGDDSDNFSGSGAGALQ
                                        10        20        30     

            180       190       200       210       220       230  
pF1KB9 DPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSP
       :        :..  ::::      :   ..: :.      :  : ..:.. .: : . .:
XP_005 D-------ITLSQQTPSTWKD---TQLLTAIPTSPE----PTGLEATAASTSTLPAGEGP
                 40           50        60            70        80 

            240       250        260        270       280       290
pF1KB9 PTTAAVLDTEAPTPRLVSTATSRPR-ALPRP-ATTQEPDIPERSTLPLGTTAPGPTEVAQ
           ::.  :.  : :    :.: . : :::  ::: :     ::   .:::  :.    
XP_005 KEGEAVVLPEVE-PGL----TAREQEATPRPRETTQLPTTHLASTTT-ATTAQEPA----
              90            100       110       120        130     

              300       310        320       330       340         
pF1KB9 TPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAAKASSPPGT
       :  :.  .   . :  .:  .::: .:.. :. :   : .:.: .:  ::...  .  :.
XP_005 TSHPHRDMQPGHHETSTP--AGPSQADLHTPHTEDGGP-SATERAAEDGASSQLPAAEGS
             140         150       160        170       180        

     350                   360        370       380       390      
pF1KB9 LPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVAVIVGGVVG
         .       :   .     :   ... .:.:...:.   ...:.::::: .::.::.::
XP_005 GEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGGVIAGGLVG
      190       200       210       220          230       240     

        400       410       420        430       440  
pF1KB9 ALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
        .::. :: ...:::::::::::.:::::::.  .:::: :::::::
XP_005 LIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
         250       260       270       280       290  

>>XP_005262678 (OMIM: 186355) PREDICTED: syndecan-1 isof  (305 aa)
 initn: 299 init1: 213 opt: 338  Z-score: 203.5  bits: 46.3 E(85289): 0.00013
Smith-Waterman score: 373; 34.4% identity (57.7% similar) in 317 aa overlap (143-442:19-305)

            120       130       140       150       160       170  
pF1KB9 VLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTG
                                     .:.:..: : .. .   : ... ..: .  
XP_005             MTVYCRWAMVDCDCSLQQIVATNLPPEDQDGSGDDSDNFSGSGAGALQ
                           10        20        30        40        

            180       190       200       210       220       230  
pF1KB9 DPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSP
       :        :..  ::::      :   ..: :.      :  : ..:.. .: : . .:
XP_005 D-------ITLSQQTPSTWKD---TQLLTAIPTSPE----PTGLEATAASTSTLPAGEGP
              50        60           70            80        90    

            240       250        260        270       280       290
pF1KB9 PTTAAVLDTEAPTPRLVSTATSRPR-ALPRP-ATTQEPDIPERSTLPLGTTAPGPTEVAQ
           ::.  :.  : :    :.: . : :::  ::: :     ::   .:::  :.    
XP_005 KEGEAVVLPEVE-PGL----TAREQEATPRPRETTQLPTTHLASTTT-ATTAQEPA----
          100            110       120       130        140        

              300       310        320       330       340         
pF1KB9 TPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAAKASSPPGT
       :  :.  .   . :  .:  .::: .:.. :. :   : .:.: .:  ::...  .  :.
XP_005 TSHPHRDMQPGHHETSTP--AGPSQADLHTPHTEDGGP-SATERAAEDGASSQLPAAEGS
          150       160         170       180        190       200 

     350                   360        370       380       390      
pF1KB9 LPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVAVIVGGVVG
         .       :   .     :   ... .:.:...:.   ...:.::::: .::.::.::
XP_005 GEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGGVIAGGLVG
             210       220       230          240       250        

        400       410       420        430       440  
pF1KB9 ALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
        .::. :: ...:::::::::::.:::::::.  .:::: :::::::
XP_005 LIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
      260       270       280       290       300     

>>XP_005262677 (OMIM: 186355) PREDICTED: syndecan-1 isof  (334 aa)
 initn: 299 init1: 213 opt: 338  Z-score: 203.0  bits: 46.3 E(85289): 0.00014
Smith-Waterman score: 374; 33.5% identity (57.1% similar) in 322 aa overlap (137-442:42-334)

        110       120       130       140       150       160      
pF1KB9 VSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATT
                                     :     .:.:..: : .. .   : ... .
XP_005 CLAPSLPHLELSLGGGGAAGEGRAESLDESEAMIPQIVATNLPPEDQDGSGDDSDNFSGS
              20        30        40        50        60        70 

        170       180       190       200       210       220      
pF1KB9 AATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATT
       .: .  :        :..  ::::      :   ..: :.      :  : ..:.. .: 
XP_005 GAGALQD-------ITLSQQTPSTWKD---TQLLTAIPTSPE----PTGLEATAASTSTL
                     80        90          100           110       

        230       240       250       260        270       280     
pF1KB9 PEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRP-ATTQEPDIPERSTLPLGTTAPGP
       : . .:    ::.  :.  : :..    . .: :::  ::: :     ::   .:::  :
XP_005 PAGEGPKEGEAVVLPEVE-PGLTAR---EQEATPRPRETTQLPTTHLASTTT-ATTAQEP
       120       130        140          150       160        170  

         290       300       310        320       330       340    
pF1KB9 TEVAQTPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAAKAS
       .    :  :.  .   . :  .:.  ::: .:.. :. :   : .:.: .:  ::...  
XP_005 A----TSHPHRDMQPGHHETSTPA--GPSQADLHTPHTEDGGP-SATERAAEDGASSQLP
                180       190         200        210       220     

          350                   360        370       380       390 
pF1KB9 SPPGTLPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVAVIV
       .  :.  .       :   .     :   ... .:.:...:   ....:.::::: .::.
XP_005 AAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGA---SQGLLDRKEVLGGVIA
         230       240       250       260          270       280  

             400       410       420        430       440  
pF1KB9 GGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
       ::.:: .::. :: ...:::::::::::.:::::::.  .:::: :::::::
XP_005 GGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
            290       300       310       320       330    

>>NP_775082 (OMIM: 602372) zonadhesin isoform 6 precurso  (2721 aa)
 initn: 103 init1:  66 opt: 302  Z-score: 171.2  bits: 43.5 E(85289): 0.0085
Smith-Waterman score: 305; 31.5% identity (51.8% similar) in 257 aa overlap (101-325:584-830)

               80        90       100       110       120          
pF1KB9 PDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEE--
                                     : :     : :.  :: . .    : :.  
NP_775 SETTGLTENPTISTKKPTVSIEKPSVTTEKPTVPKEKPTIPTEKPTISTEKPTIPSEKPN
           560       570       580       590       600       610   

      130       140       150             160                  170 
pF1KB9 LPSERPTLEPATSPLVVTEVPEEPSQRAT------TVSTTMATT-----------AATST
       .:::.::. :. .: ..:: :  ::.. :      :.::   :.           ..:: 
NP_775 MPSEKPTI-PSEKPTILTEKPTIPSEKPTIPSEKPTISTEKPTVPTEEPTTPTEETTTSM
           620        630       640       650       660       670  

             180       190        200            210       220     
pF1KB9 GDPTVATVPATVATATPSTPAAPP-FTATTAVIRT-----TGVRRLLPLPLTTVATARAT
        .:.. :   .. :  :: :.  : ..   ..: :     .  .  .:    :. : ..:
NP_775 EEPVIPTEKPSIPTEKPSIPTEKPTISMEETIISTEKPTISPEKPTIPTEKPTIPTEKST
            680       690       700       710       720       730  

          230       240         250       260         270          
pF1KB9 -TPEAPSPPTTAAVLDTEAPT--PRLVSTATSRPRALPRPAT--TQEPDIP-ERSTLPLG
        .:: :. ::   .. :: ::  :.  .: : .:   :.  :  :..: :: :. :.:  
NP_775 ISPEKPTTPTEKPTIPTEKPTISPEKPTTPTEKPTISPEKLTIPTEKPTIPTEKPTIP--
            740       750       760       770       780       790  

     280        290       300       310       320       330        
pF1KB9 TTAPG-PTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGG
       :  :   ::   ::: :: ..:  ..: .:.   :.    :: ::::             
NP_775 TEKPTISTEEPTTPTEETTIST--EKPSIPMEK-PT----LPTEETTTSVEETTISTEKL
              800       810         820            830       840   

      340       350       360       370       380       390        
pF1KB9 AAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGAL
                                                                   
NP_775 TIPMEKPTISTEKPTIPTEKPTISPEKLTIPTEKLTIPTEKPTIPIEETTISTEKLTIPT
           850       860       870       880       890       900   




442 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:06:17 2016 done: Fri Nov  4 00:06:19 2016
 Total Scan time: 11.820 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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