GENSCAN 1.0	Date run:  4-Nov-116	Time: 00:06:06

Sequence gi568815586f:71655175_71885670 : 230496 bp : 38.46% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -   1225   1220    6                              -1.95
 1.05 Term -   1389   1328   62  1  2   93   42    84 0.932   1.29
 1.04 Intr -   2099   1711  389  1  2  -31   90   332 0.063  15.01
 1.03 Intr -   8401   7775  627  0  0   25   48   598 0.038  39.89
 1.02 Intr -   8727   8544  184  1  1   82   90   152 0.964  12.72
 1.01 Init -   9068   8849  220  2  1  114   37   101 0.764   6.44
 1.00 Prom -  17560  17521   40                              -6.75

 2.00 Prom +  18793  18832   40                              -4.85
 2.01 Init +  20701  20782   82  0  1   63   84    41 0.021   2.38
 2.02 Intr +  31004  31290  287  0  2   43   77   199 0.418  10.44
 2.03 Intr +  31486  31636  151  0  1   85  115   -46 0.481  -3.39
 2.04 Intr +  34417  34530  114  2  0   87   87    58 0.481   5.10
 2.05 Intr +  41262  41399  138  1  0   94   93    91 0.971   9.71
 2.06 Intr +  42106  42360  255  2  0  103   97   113 0.528  10.19
 2.07 Intr +  43726  43935  210  2  0  117   99   104 0.901  12.36
 2.08 Intr +  45658  45817  160  2  1  116   18    76 0.155   1.52
 2.09 Intr +  56300  56409  110  2  2   74   53    73 0.016   1.41
 2.10 Intr +  75779  75828   50  0  2   74   89    46 0.129   0.78
 2.11 Intr +  76619  76816  198  1  0  -14  -26   300 0.857   7.03
 2.12 Intr +  77105  77226  122  1  2   59   98    99 0.579   6.37
 2.13 Term +  82870  82879   10  1  1  108   49     0 0.144  -5.21
 2.14 PlyA +  83339  83344    6                               1.05

 3.00 Prom +  86291  86330   40                              -6.05
 3.01 Init +  99956 100114  159  1  0   80   80   306 0.118  26.87
 3.02 Intr + 114626 114685   60  1  0   89  106    28 0.120   2.71
 3.03 Intr + 118785 118848   64  2  1   91   99    -2 0.084  -1.43
 3.04 Intr + 126857 126911   55  0  1   71   91    43 0.420   0.02
 3.05 Intr + 127396 127484   89  1  2   70   56    65 0.419   0.20
 3.06 Intr + 130357 130480  124  2  1  112   15   145 0.067   8.32
 3.07 Intr + 149793 149908  116  0  2   70   36    71 0.005  -0.73
 3.08 Term + 153518 153612   95  0  2   56   48   138 0.066   3.61
 3.09 PlyA + 154234 154239    6                               1.05

 4.00 Prom + 162103 162142   40                              -6.45
 4.01 Init + 165650 165691   42  1  0   96   93    11 0.917   2.87
 4.02 Intr + 168896 169110  215  1  2   48   95    93 0.642   2.59
 4.03 Term + 170269 170536  268  1  1   81   48   123 0.902   1.58
 4.04 PlyA + 170827 170832    6                               1.05

 5.07 PlyA - 170998 170993    6                               1.05
 5.06 Term - 179991 179853  139  2  1   45   50   162 0.870   4.55
 5.05 Intr - 180306 180106  201  2  0   24   52   177 0.016   5.18
 5.04 Intr - 184757 184412  346  0  1   59    1   218 0.005   3.73
 5.03 Intr - 189782 189664  119  1  2   41   66    61 0.259  -1.61
 5.02 Intr - 197522 197361  162  1  0   60  121   112 0.667   9.87
 5.01 Init - 199693 199599   95  1  2   59   81    48 0.418   1.10
 5.00 Prom - 200996 200957   40                              -5.65

 6.00 Prom + 201618 201657   40                              -6.95
 6.01 Init + 201988 202053   66  0  0   79   64    47 0.189   0.52
 6.02 Intr + 216896 216994   99  1  0  101  115    53 0.967   8.69
 6.03 Intr + 217755 217829   75  2  0   93   63   117 0.942   8.49
 6.04 Intr + 225295 225433  139  0  1   53   64   126 0.181   5.82
 6.05 Term + 229637 229851  215  0  2   76   42    63 0.014  -3.09
 6.06 PlyA + 230413 230418    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -   2127   1711  417  1  0   10   90   338 0.832  19.27
S.002 Init -   3842   3791   52  2  1   53   98    13 0.886   0.19
S.003 Term -   8401   7756  646  0  1   25   32   602 0.936  40.91
S.004 Term +  21515  21934  420  1  0   60   32   189 0.845   4.80
S.005 Term + 130357 130499  143  2  2  112   36   142 0.902   8.51


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586f:71655175_71885670|GENSCAN_predicted_peptide_1|493_aa
MADTTRSFSPPPRGSGSTAFLWQRSSEQLKGRGVFPSDYYKLQEFYNKTLSRLQQQLHLL
LHAPNCTKPDPAVGSDVSGTAATRVPFSRGGRTPIAEEQGGARKGNWVATVRRERAGVLG
CGEVGEQRPLGVRVGGLSPKEEGELEDGEISDDDNNSQIRSRSSSSSSGGGLLPYPRRRP
PHSARGGGSGGGGGSSSSSSSSQQQLRNFSRSRHASERGHLRGPSSYRPKEPFRSHPPSV
RMPSSSLSESSPRPSFWERSHLALDRFRFRGRPYRGGSRWSRGRGVGERGGKPGCRPPLG
GGAGSGFSSSQSWREPSPPRKSCILNVAVGAGCVTKVPFSVITRKQNYSSKNENCVEETF
EDLLLKYKQIQLELECINKDEKLALSSKEENVQEDPKTLNFEDQTSTDNVSITKDSSKEV
APEEKTQVKTFQAFELKPLRQKLTLPGDKNRLKKVKDGAKPLSLKSDTTDSSQGIPYRVK
EGFTPIPGLKFSA

>gi568815586f:71655175_71885670|GENSCAN_predicted_CDS_1|1482_bp
atggcggacacaacccgttctttctccccgcccccaagagggagcggatctactgcgttt
ctttggcagcggtcctcagagcaattaaaaggaagaggtgttttcccctccgattactat
aaattacaagagttttacaataaaactctctcaaggctgcaacagcagctccacctactt
ctgcatgcacccaactgtaccaagccagaccctgcggtgggaagtgacgtttcgggtaca
gccgctaccagagtccctttctcgcgaggcggaagaaccccgatcgctgaggagcaaggg
ggcgctaggaaagggaactgggttgcgacggtccggcgagagagagctggggtgctgggg
tgcggggaagttggggagcagaggccgcttggtgtccgagtaggtggcctctcgccgaag
gaagaaggggagcttgaagatggggaaatcagtgacgacgataataacagccagatacgg
agtcggagcagcagcagcagcagcggcggcgggctgttaccctatccgcggcgaaggcct
cctcactcggcccggggcggtggatctggcggaggcggtggctcttcctcgtcatcgtcc
tcttctcagcagcagctgaggaatttctcacgctcgcggcacgcgtctgagcggggccac
ctcaggggacccagcagctaccgacccaaagaaccgttccggtctcatccgccttctgta
cggatgccttcgagctcactgtccgaaagcagtccccggccgtctttctgggagcggagc
cacctcgccttggaccgtttccgctttcgaggcaggccttaccggggtgggagtcgctgg
agtcgggggcgaggagtgggtgagcgaggaggcaagccggggtgcagacctcctctggga
ggaggagcaggatccgggttcagcagcagtcagagctggcgagagccctctccacctcgg
aagagctgtatccttaacgtggcggtcggcgctgggtgtgtcactaaagttccctttagc
gtcattactagaaaacaaaattattcatcaaaaaatgaaaactgtgtggaagaaactttt
gaagatttgcttttaaagtataaacaaatacagttggaactagaatgcatcaataaggat
gaaaaactagcattgagtagcaaagaagagaatgtgcaggaagatcctaaaacattgaac
ttcgaggaccaaactagcactgataatgtcagtattacaaaggattcaagtaaagaagta
gctcctgaggagaaaacacaagtcaaaacttttcaggcatttgaattaaaaccactcagg
caaaaattgactttaccaggagataagaaccgtttgaaaaaagttaaagatggagcaaaa
ccactttccctgaaatccgacactactgattctagtcaaggtatcccttatcgggtaaag
gagggttttactcctattcctggtttgaaattttcagcgtga

>gi568815586f:71655175_71885670|GENSCAN_predicted_peptide_2|628_aa
MWINEDQNEVERSIKNNIVRTDMIRAQWRLAQLSGRDCVQPRRACFPDLPKFGCPSCPFA
AAGLPGPRVRRLRREVGGTRQRRDRGLAASAFSFPRGLRREALKRPAAGDRPSPSAGLRS
AFAELISLFSMTDLNDNICKRYIKMITNIVILSLIICISLAFWIISMTASTYYGNLRPIS
PWRWLFSVVVPVLIVSNGLKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKL
TKWKGEVKKRLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSAS
WMCLSLLAALACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTNGGVTVVGLVSSLLGG
TFVGIAYFLTQLIFVNDLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTGLDESTGM
VVNSPTNKARHIAGKPILDNNAVNLFSSVLIALLLPTAAWGFWPRGVTKLIAVYRPEYLC
GDAKVQLRSYSTKVIVKLRRGLARQGTSIAGCALTDGGMAHPQAAGRGEEQICGRRHKRL
DKGWHASRPSTNQTKWSLAQEVGKEPDRSEAQLQGKTIPLLAPPSRSEQRGTEEVSQTRI
AHPVRGTKEPFRSNIKVVLTQGQDLQAS

>gi568815586f:71655175_71885670|GENSCAN_predicted_CDS_2|1887_bp
atgtggattaatgaggatcaaaatgaagtggagagatcaataaagaataatatagtcaga
acagatatgatacgggcccagtggcggcttgcgcagctgtcgggacgtgactgcgttcag
ccgcgtcgggcgtgcttcccagacttgcccaagttcgggtgccctagctgcccctttgca
gccgctggcctacccggcccgcgggtgagaaggttgcgacgggaggtgggtggaactcgc
cagcgccgggaccgcggattggctgcctcggctttctcttttccccgtgggctccggcgt
gaggcgctgaagcggccggcagccggcgaccggccctcaccgtccgccgggttgcgctct
gcttttgcggagctcatatccttattttccatgacagatcttaacgacaatatatgcaaa
agatatataaagatgataactaatatagttatactgagcctgatcatttgcatttcgtta
gctttctggattatatcaatgactgcaagcacctattatggtaacttacgacctatttct
ccgtggcgttggctgttttctgttgttgttcctgttctgatcgtctctaatggccttaaa
aagaaaagtctagatcacagtggggctctaggagggctagtcgttggatttatcctaacc
attgcaaatttcagcttttttacctctttgctgatgtttttcttgtcttcttcgaaactc
actaaatggaagggagaagtgaagaagcgtctagattcagaatataaggaaggtgggcaa
aggaattgggttcaggtgttctgtaatggagctgtacccacagaactggccctgctgtac
atgatagaaaatggccccggggaaatcccagtcgatttttccaagcagtactccgcttcc
tggatgtgtttgtctctcttggctgcactggcctgctctgctggagacacatgggcttca
gaagttggcccagttctgagtaaaagttctccaagactgataacaacctgggagaaagtt
ccagttggtaccaatggaggagttacagtggtgggccttgtctccagtctccttggtggt
acctttgtgggcattgcatacttcctcacacagctgatttttgtgaatgatttagacatt
tctgccccgcagtggccaattattgcatttggtggtttagctggattactaggatcaatt
gtggactcatacttaggggctacaatgcagtatactgggttggatgaaagcactggcatg
gtggtcaacagcccaacaaataaggcaaggcacatagcagggaaacccattcttgataac
aacgcagtgaatctgttttcttctgttcttattgccctcttgctcccaactgctgcttgg
ggtttttggcccaggggagtcaccaagttaatagcagtataccgaccagaatacctctgt
ggggatgctaaagttcagttgagaagctacagcaccaaagttattgtaaaactaagaagg
gggctggcaaggcaaggtacttctatagcagggtgcgcccttacagatggaggaatggca
cacccacaagctgctggacgtggagaggagcagatctgtggaagaagacacaagcggctg
gataagggctggcatgccagcaggccatcgaccaaccagacgaagtggagtttggcccag
gaagtcggaaaagagccagaccgctcagaggcccaactccaggggaaaaccatccccctt
cttgctcccccatcgaggtctgagcagcggggcactgaagaagtgagccaaacccgcatc
gcacaccctgtgagggggacaaaggaacctttccgttccaacatcaaggttgttttgacc
caagggcaagatttacaagcatcataa

>gi568815586f:71655175_71885670|GENSCAN_predicted_peptide_3|253_aa
MAAAGGGGGGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKK
LNIGGKRVNLAIWVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA
KHYHTSAKQNKGIEELFLDLCKRMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQT
SGGGAGTPLKTGTAVLISLLVLLAQCLAAGECDSDECMGSHYGTDLDASDTAITENKRTD
KISARMQSLMSMK

>gi568815586f:71655175_71885670|GENSCAN_predicted_CDS_3|762_bp
atggctgcggccggcggcggcggcggcggggcggcggcggcgggccgagcctactcgttc
aaggtggtgctgctgggggaaggctgcgtggggaagacgtcgctggtgctgcgctactgc
gagaacaagtttaacgacaagcacatcaccactctgcaggcatcattcttaacaaagaag
ttaaatattggtgggaaaagagtaaaccttgccatatgggtaaaaaactgggtcaaagaa
ttacggaaaatgttgggaaatgaaatctgtttatgtatagttggtaataaaatagacttg
gaaaaggagagacatgtttccattcaagaagcagagtcgtatgcagaatctgtgggagca
aaacattatcatacttcagccaaacagaacaaaggaattgaggaactctttcttgacctt
tgtaaaaggatgatagaaacagcacaagtggatgagagagcaaaaggcaatggctctagt
cagccgggaactgcaaggcgaggtgtacagattattgatgatgaacctcaagcccagacc
agtggtggaggagcaggaactcctttgaagactggaactgctgttcttatctctttatta
gtccttttggctcagtgtctggctgcaggtgaatgtgacagtgatgagtgcatggggagt
cattatggcaccgatttagatgccagcgacacagcaattacagaaaacaaacgaacagac
aaaatctctgcccgtatgcagtctttaatgtcaatgaagtga

>gi568815586f:71655175_71885670|GENSCAN_predicted_peptide_4|174_aa
MLYIRSLELIPLITQLRQAGSGESGLQKRKSRCSSSKSDQQVIYLKEQKVKGHGCCVHIP
TLLWNTESGNAEPQTLAPAQNAKSSLLSEALSSNVMVYMLLNLHSYESGGQHLNRDTATR
KFKPEILMNSWRPTRGQLQNVKLLEGPIKGGLPLPAPPWAFPPGNPRGSHRVKG

>gi568815586f:71655175_71885670|GENSCAN_predicted_CDS_4|525_bp
atgctgtacattagatccctagaacttattcctcttataactcagctaagacaggctggg
tctggggaatcaggactgcagaaaagaaaatcaagatgcagcagcagcaagtctgaccag
caggtaatctacctaaaagagcaaaaagttaagggccatggttgctgtgtccatatacca
acattgctgtggaatactgaatctgggaatgctgaaccacagactctagcaccagcccaa
aatgccaagagcagccttctatcagaagctttgtcttcaaatgtgatggtttatatgctc
ctgaacttacattcttatgagtcaggaggccagcatcttaacagggacacagccaccagg
aagttcaaaccagaaatcttgatgaattcctggaggccaacaagaggccagctccagaat
gtgaagctgctggagggtcccataaagggaggtctccccctacccgctccaccctgggct
tttcctccaggaaacccacgaggctcccatagggtcaaaggttaa

>gi568815586f:71655175_71885670|GENSCAN_predicted_peptide_5|353_aa
MKKYTLRKRKGRTDQRFEEVAPPVTKRICKRRDLWNLELEMDDLGYPVEEISKQQSLQDV
AWLFLTTYAHMHTQRNDLKLELIFKRSFFTHAFSTFMSTNHMLEIKGVSGKNTHKEKCLT
KLAVLYATGCPDTESPSCPSPNQLPGSKSIPVPEKSRGLPGGRYLPSRSQHPPPPCFLRV
PGNDVAEPHVSLGHTTTSGKTRITSGREKGGEWREGSGGKEPGGKKPPDACVLNWAQRRL
GEIRGDFASTKQEYSENKSKLLEIKNMMLNLVKITEVQATMQELSKEMLKAGIVEEMLEG
TFESIEDHRGLGQSKVTAVLLEPESSRAMAASEDKEEEEALEPMQSWLVTLCS

>gi568815586f:71655175_71885670|GENSCAN_predicted_CDS_5|1062_bp
atgaaaaaatataccttgagaaaaagaaagggaagaacagatcaaagatttgaggaagta
gcaccacctgtcaccaagcgaatctgcaaaagaagggatctgtggaacttggaacttgag
atggatgatttagggtatccagtggaagaaatttctaagcagcaaagtcttcaagatgtg
gcctggctgtttctaacaacctatgctcatatgcatacgcaaagaaatgacctgaaactg
gaacttatatttaaaagaagtttctttactcatgcattcagcacatttatgagcaccaac
cacatgctggaaataaaaggtgtcagtggcaaaaacacacacaaggaaaagtgtctgact
aaactagcagtattatacgccacgggttgtccggacacagaaagtccctcgtgtccctcc
cccaaccagctgccagggagcaaaagcatccccgtcccagagaaaagccgaggtcttcct
ggaggccgttacctaccttcccgctcacaacacccgccgccgccatgtttcctgcgcgtg
cctggtaatgacgtagcagaacctcacgtgtctctcggacatacaacaacatccggcaaa
actagaataacatccgggcgggaaaagggcggggagtggcgggaagggagtggaggaaag
gagccgggcggaaaaaagccgcctgacgcgtgcgtgctgaactgggctcagagacggctg
ggagagataagaggagattttgcttccacgaaacaagaatattcagagaacaaaagtaag
ctgttagaaattaaaaatatgatgctaaatcttgtgaagattacagaagtccaggccacc
atgcaggagctgtccaaagaaatgttgaaggctgggatcgtagaggagatgttagagggc
acttttgaaagcatagaagatcacaggggccttgggcaaagcaaagtgactgctgtcctt
ctagagccagaatcttcaagagcgatggccgcctcagaggacaaggaggaagaagaggct
ctggagcccatgcagtcctggctggttacactctgcagctag

>gi568815586f:71655175_71885670|GENSCAN_predicted_peptide_6|197_aa
MVLNSWPQVILLPWPPSVLGLQIIYEQEGVYIHSSCGKTNDQDGLISGILRVLEKDAEVI
VDWRPLDDALDSSSILYARKDSSSVVEWTQAPKERGHRGSEHLNSYEAEWDMVNTVSFKR
KPHTNGDAPSHRNGKSKWSFLFSLTDLKSIKQNKEGMGWSYLVFCLKDDVVLPALHFHQG
DSKLLIESLEKYVVLCE

>gi568815586f:71655175_71885670|GENSCAN_predicted_CDS_6|594_bp
atggtcttgaactcctggcctcaagtgatcctcctgccttggcctcccagtgtcctggga
ttacagattatatatgaacaagaaggagtatatattcactcatcttgtggaaagaccaat
gaccaagacggcttgatttcaggaatattacgtgttttagaaaaggatgccgaagtaata
gtggactggagaccattggatgatgcattagattcctctagtattctctatgctagaaag
gactccagttcagttgtagaatggactcaggccccaaaagaaagaggtcatcgaggatca
gaacatctgaacagttacgaagcagaatgggacatggttaatacagtttcatttaaaagg
aaaccacataccaatggagatgctccaagtcatagaaatgggaaaagcaaatggtcattc
ctgttcagtttgacagacctgaaatcaatcaagcaaaacaaagagggtatgggctggtcc
tatttggtattctgtctaaaggatgacgtcgttctccctgctctacactttcatcaagga
gatagcaaactactgattgaatctcttgaaaaatatgtggtattgtgtgagtaa