GENSCAN 1.0	Date run:  4-Nov-116	Time: 00:00:25

Sequence gi568815589f:96046009_96247853 : 201845 bp : 46.40% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1935   2014   80  0  2  145   80    41 0.890   8.19
 1.02 Intr +   3190   3355  166  2  1   80   30    48 0.278  -2.78
 1.03 Intr +   5568   5697  130  0  1   44   99    55 0.259   2.90
 1.04 Intr +  13215  13459  245  2  2   80   39   163 0.334   6.90
 1.05 Intr +  24249  24415  167  0  2   81   31   136 0.253   6.80
 1.06 Intr +  30041  30150  110  0  2   72   50    73 0.390   1.90
 1.07 Intr +  34213  34396  184  0  1   79  105    41 0.113   4.26
 1.08 Intr +  36325  36530  206  2  2   52   75    48 0.199  -1.18
 1.09 Intr +  39567  39795  229  2  1   55   78   117 0.245   4.84
 1.10 Intr +  47704  47800   97  2  1  102   88   123 0.436  12.77
 1.11 Term +  48990  49068   79  0  1   90   37    88 0.899   1.14
 1.12 PlyA +  50685  50690    6                               1.05

 2.00 Prom +  51139  51178   40                              -6.26
 2.01 Init +  53216  53329  114  1  0   86   77    58 0.166   4.72
 2.02 Intr +  55526  55741  216  1  0   49   29   130 0.023   1.90
 2.03 Intr +  70297  70404  108  0  0  120   39    85 0.002   7.28
 2.04 Intr +  71745  71853  109  2  1    3   80    89 0.001  -0.54
 2.05 Intr +  82296  82477  182  1  2   82   73    71 0.424   4.59
 2.06 Intr +  94902  95082  181  2  1   81   52    84 0.588   3.54
 2.07 Intr + 100300 100970  671  2  2   74   35   660 0.764  50.72
 2.08 Term + 101057 101848  792  1  0   23   41   475 0.750  29.60
 2.09 PlyA + 101935 101940    6                               1.05

 3.00 Prom + 102379 102418   40                              -1.66
 3.01 Init + 106873 106919   47  0  2   71   97    39 0.816   3.26
 3.02 Intr + 121158 121308  151  0  1   97   37    90 0.133   4.96
 3.03 Intr + 121894 121995  102  0  0   19   66    97 0.153   0.97
 3.04 Intr + 122213 122282   70  1  1   33   52    71 0.389  -3.25
 3.05 Intr + 122921 123115  195  0  0   91   94    65 0.577   6.79
 3.06 Term + 123355 123416   62  2  2   65   43    62 0.577  -2.63
 3.07 PlyA + 123877 123882    6                               1.05

 4.14 PlyA - 124300 124295    6                               1.05
 4.13 Term - 126267 125979  289  2  1   35   48   155 0.392   1.05
 4.12 Intr - 126579 126501   79  1  1   77   92    49 0.391   2.81
 4.11 Intr - 127877 127793   85  2  1   92   45    85 0.278   3.99
 4.10 Intr - 133852 133806   47  2  2  106   77    10 0.011  -0.17
 4.09 Intr - 135074 134964  111  0  0   61   34   111 0.010   3.35
 4.08 Intr - 137889 137774  116  2  2   86   18    73 0.004   0.19
 4.07 Intr - 159810 159739   72  2  0   87   41    74 0.085   1.12
 4.06 Intr - 163699 163641   59  1  2   77  105    37 0.177   1.98
 4.05 Intr - 168478 168424   55  0  1  107   97    49 0.548   6.68
 4.04 Intr - 186929 186733  197  2  2  102   58    57 0.017   2.31
 4.03 Intr - 189562 189461  102  1  0   98   77    95 0.928   9.77
 4.02 Intr - 198386 198321   66  2  0  100   94    86 0.924   9.50
 4.01 Intr - 200582 200548   35  0  2   93  116     0 0.298   1.24

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  61337  61272   66  2  0  135   39    81 0.956   5.84
S.002 Intr + 137836 137906   71  2  2  125   94    40 0.832   7.20
S.003 Term + 139367 139447   81  1  0  113   54    55 0.802   2.29


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589f:96046009_96247853|GENSCAN_predicted_peptide_1|564_aa
XDGFDISNCSMQPGRPGFSGCAGDAGPGWHQTPAHQTSYHQLEVAFWFMEQDGTVKSVVL
MGQSQVSAPAPPEPKEASGGPARILLIGAFYRTLIGAFYRVLIGAFYRALIGAFHRALIG
AFYNPLFSKQLDVYISEFDASGVLSSEVSAFSEEMNNLEATAQKPSLAHLYKKKEVLVCA
TMDDPNQIVLSERSQTWKTAYNMIPHQTSNQAGKFQQKEIPVNEGKRHGTQEIVPTTHES
GNSKSRNNSCAADPDISHRRGGLSNTIHSFHGLKILDTNWGNCLVYQDFLNPLCGRQATQ
DIRYYLFSLTPTCPVLFQISAPEIVTLFLKVACSELCICIFRHPRKYGSSCSNHGNDILS
KAPSSHIHITATSAPIAAHCSRLDCGEVCIHLSWETSEWLFSSQHLNGSKNLDCPLEYSG
CGILGMSAFCLITDSGSGHSPHLTFKASGRGPCAGSDHTLTGMQPHLPLHVQLRPPGVRG
VFSFPHLTWSPPVSLPPDAGSSLVVTECAAMKHTVEGDMTPMTREQVEAELLHAGFVCSG
SFPNGTLRGKELVHVHAATICPQR

>gi568815589f:96046009_96247853|GENSCAN_predicted_CDS_1|1695_bp
nntgacggatttgacataagcaactgctccatgcagccaggccggccaggcttctcaggc
tgtgctggggacgcagggcccggatggcaccagacacccgcccaccagacttcataccac
cagctggaagtggctttctggtttatggagcaagacggaactgtaaagtcagtcgttctc
atgggccagagtcaagtcagcgcccccgccccacccgagccaaaggaggcttctggaggc
cccgccagaattctgctgattggtgcgttttacagaacactgattggtgctttttacaga
gtgctgattggtgcattttacagagcactgattggtgcctttcacagagcgctgattggc
gcgttttacaatcctctgttctcaaaacaactggatgtgtacatttctgagtttgatgcc
agtggggttttgagctcagaggtctcagccttcagtgaagaaatgaacaacctagaggcc
actgcccagaagccatctttggctcatttatacaagaagaaggaagtgctggtgtgtgct
acaatggatgaccccaaccaaattgtgctaagtgaaagaagccagacatggaagaccgca
tacaatatgattccacaccaaacgagtaatcaagcaggaaagttccagcaaaaagaaatt
ccagtaaatgaaggaaaaagacatggaacccaggaaatagtgcctacaacccatgagagt
ggtaacagcaagtccaggaataacagctgtgctgcggaccctgatatcagccataggcga
ggaggcctttctaacaccattcatagcttccatggattgaagatcctagacacaaactgg
ggcaactgcctggtctaccaggatttccttaaccctctgtgtgggcggcaagccacccag
gatattcggtattacctattttccctaactcctacttgtcctgtactttttcaaatatca
gctcccgaaattgtcaccctcttccttaaggtggcttgctctgagctctgtatctgcatt
ttccgacatcccagaaagtacggtagttcctgttctaatcatggcaatgacatactcagt
aaagccccttccagccacattcacatcactgcaacctctgctcccattgctgcccattgc
agtcgactggactgcggagaggtgtgcatccacctttcctgggaaacatctgaatggctt
ttttccagccagcacctaaacggctctaagaacctggattgtcccctggaatattctgga
tgtggtatcttgggtatgtctgctttctgtctcatcactgacagcggctcaggccacagt
cctcacctcacattcaaggcctccggccgtgggccttgtgctgggagtgaccacactctc
accggcatgcagccgcacctgcccctccacgtccagctgcgtccacctggggtcagggga
gtcttcagcttcccgcacctgacctggagccctcccgtgagcctccctccagatgcgggc
agctcacttgtggtcactgagtgtgctgcaatgaagcacacagttgagggggacatgacc
cccatgacccgtgagcaggtagaagcagaattgctgcatgcgggcttcgtgtgttcagga
agttttccgaatggcactctgcgtgggaaggagcttgtgcacgtgcacgctgccaccatc
tgccctcagcgctga

>gi568815589f:96046009_96247853|GENSCAN_predicted_peptide_2|790_aa
MAHAGKEQVLRSSPSHLPENCCSGHCGTIGSVDATGMVEIRHSKSQDEIGGRHKIQITKT
LLIKQVAVKKPAKTHQNQDGDESDSGRPHCYTPISAMTVYRCHSNVWKLPALTQGWMGAG
AGGPGIASGLHNKTLSTYESNFQSPSERDKKTLAHKSEENMKGVTAERGQLNDCKRKSDL
AVTSPRKSYPGSSQLRLKHDLFGKPLIPLGYVPIATFCKTHQTCNEFSIVWLLHEMGSSM
KARCCRSGVLKAGGLARNREAWAAARGGTSSWSTLDQSRPGQSLARSPSEVELDPLHAQA
EEQGNLPYDVTEESIKEFFRGLNISAVRLPCEPSNPVRLKGFGYAEFEDLDSLLSALSLK
EESLGNRRIRVDVADQAQDKDRDDCSFGRDRNRDSDKTGTDWRARPATDSFDDYPPRRGD
DSFGDKYRDRYDSDRYRDGYRDGYRDGQRRDMDPYGGRDRYDDRGSRDYDRGYDSRIGSG
RRAFGSGYRRDDVSEEAGTTMKTDMTDGMIGLGAPEMITLWMIIGVMSTRAASIFGGAKP
VDTAAREREVEERLQKEQEKLQHQLDEPKLERRPPERHPSWRSEETQERERSRTGSESSQ
TGTSTTSGRSKSAQDARRRENEKSLENETLNKEEDCHSPTSKPPKPDQPLKVMPAPPPKE
NAWVKRSSNPPARSQSSDTEQQSPTSGEGKVAPAQPSEEGPARKDENKVDGMNVPKGQTG
NSSRGPGDGGNKDHWKESDRKDGKKDQDSRSAPEPKKPEENPASKFSSASKYAALSVDGE
DENEGEDYAE

>gi568815589f:96046009_96247853|GENSCAN_predicted_CDS_2|2373_bp
atggcccacgcagggaaggagcaggtcttgcgctcctctccatcccacttgccagaaaat
tgctgcagtggacactgtggcactataggttctgtggacgccacgggcatggtggagatt
aggcattctaagtcacaggatgagataggaggtcggcacaagatacagatcacaaagacc
ttgctgataaaacaggttgcagtaaagaagccggccaaaacccaccaaaaccaagatggt
gacgagagtgactctggtcgtcctcactgctacactcccatcagcgccatgacagtttac
agatgccatagcaacgtctggaagttacctgctttgacccagggctggatgggagctgga
gcaggaggcccaggcattgcatctggtctccacaacaagacgctcagtacctacgagtcc
aactttcagtctccaagtgaaagggacaaaaagacattggcgcacaaaagcgaagagaac
atgaaaggagtcacagcagagagaggtcaactgaatgactgcaagaggaagtcagatcta
gcagtgacttcaccacgaaaatcctatcccgggagttctcagttgcgacttaaacatgac
ttatttgggaagcctttgatccccctcggatatgttcccattgcaaccttctgtaaaacc
catcagacttgcaatgaattttctattgtctggcttctccatgaaatgggaagctccatg
aaagctaggtgctgtcgaagtggcgtcctgaaagccgggggccttgcccggaacagggag
gcttgggctgcggccaggggaggcaccagcagctggagcacactagaccagagccggcca
ggacagagcctggcccgatctccctcggaggtagaactggacccccttcatgctcaggct
gaggagcagggaaacctaccctatgatgttacagaagagtcaattaaggaattctttcga
ggattaaatatcagtgcagtgcgtttaccatgtgaacccagcaatccagtgaggttgaaa
ggttttggttatgctgaatttgaggacctggattccctgcttagtgccctgagtctcaag
gaagagtctctaggtaacaggagaattcgagtggacgttgctgatcaagcacaggataaa
gacagggatgattgttcttttggccgtgatagaaatcgggattctgacaaaacaggtaca
gactggagggctcgtcctgctacagacagctttgatgactacccacctagaagaggtgat
gatagctttggagacaagtatcgagatcgttatgattcagaccggtatcgggatgggtat
cgggatgggtatcgggatggccaacgccgggatatggatccatatggtggccgggatcgc
tatgatgaccgaggcagcagagactatgatagaggctatgattcccggataggcagtggc
agaagagcatttggcagtgggtatcgcagggatgatgtctcagaggaggcggggaccact
atgaagaccgatatgacagacgggatgatcggtcttggagctccagagatgattactctc
tggatgattataggcgtgatgtccactcgagctgcttctatctttggaggggcaaagccc
gttgacacagctgctagagaaagagaagtagaagaacggctacagaaggaacaagagaag
ttgcagcatcagctggatgagccaaaactagaacgacggcctccggagagacacccaagc
tggcgaagtgaagaaactcaggaacgggaacggtcgaggacaggaagtgagtcatcacag
actgggacctccaccacatctggcagaagtaagtcagcccaggatgcacgaaggagagag
aatgagaagtctctagaaaatgaaacactcaataaggaggaagattgccactctccaact
tctaaacctcccaaacctgatcagcccctaaaggtaatgccagcccctccaccaaaggag
aatgcttgggtgaagcgaagttctaaccctcctgctcgatctcagagctcagacacagag
cagcaatcccctacaagtggtgagggaaaagtagctccagctcaaccatctgaggaagga
ccagcaaggaaagatgaaaacaaagtagatgggatgaatgtcccaaaaggccaaactggg
aactctagccgtggtccaggagatggagggaacaaagaccactggaaggagtcagatagg
aaagatggcaaaaaggatcaagactccagatctgcacctgagccaaagaaacctgaggaa
aatccagcttccaagttcagttctgcaagcaagtatgctgctctctctgttgatggtgaa
gatgaaaatgagggagaagattatgccgaatag

>gi568815589f:96046009_96247853|GENSCAN_predicted_peptide_3|208_aa
MNKHRDFQVALIERDSEKCRALLSFEPNARAKAGLLLEVRLPQLRSSHARRKRQQASSWT
FFQVPQRLYIQLEESEVNMIITKANIPPMTSQERKRCVEMTQHEKDSIERAPVQAASGIH
WEPGTLQYTEEIKASFQKPAVQLRTIQACACTAPPKDLPMQMAGPLSTASVSAGLGQGLR
ISISNKAPGKALVTVSSGTAQLPGMTKR

>gi568815589f:96046009_96247853|GENSCAN_predicted_CDS_3|627_bp
atgaataaacacagagactttcaagttgccttgattgaacgggacagcgagaaatgcaga
gctctcctgtcatttgaacctaatgctcgggccaaggcaggcctgctcctcgaggtccgc
ctacctcagcttagatccagccatgcgcgcaggaagcggcagcaggccagctcatggacg
ttcttccaggtccctcaaaggctgtacatccagctagaagaatccgaagtcaacatgata
atcacaaaggcaaacattccaccaatgacaagtcaagagcgcaagagatgtgttgagatg
acccagcacgagaaggacagcattgaaagagcccctgtccaggcggcttctggcattcac
tgggaaccagggaccctacagtacacagaagagataaaagcaagcttccagaaacctgca
gtccagcttcgcactatacaagcctgcgcgtgcacggcgcctcccaaggacttgcccatg
cagatggctgggcccctttccacagcatctgtttccgcaggtctgggtcagggcctgaga
atcagcatttctaacaaggctccagggaaggccctggtcacagtctcctcagggacagct
cagctgcctggaatgaccaagcgctga

>gi568815589f:96046009_96247853|GENSCAN_predicted_peptide_4|437_aa
XDTANSETYGIKAFVCAFSKALQEEYKAKEVIIQAGFLSLIPAWAFYSGAFQRLLLTHYV
AYLKLNTKPSICATSQEAEGRRVPFGWHWEQENEVIMGCCSKKYWQLLLGRLPGVSSLSC
SCGWEPEHPTSKTLLMHSASHVGIGDEADYVAEVNAGCAPVECKGILRTSKREIRSNTKM
KVLEMQPNNKKKPMAGVIIRLQRATSWRCSLNVTCEEEQWSRGMQRKKRYRGRRDCGMYS
QEITDSQDAWQQVGGQNFWRWNLLDSVSPEKVPSEAPCYPSTMGIVMSMRTVCSSKRDLP
AAMAVSEAKGKGKPKEYSGQANFPDSRNQCKVGHKDPQGLVINAAMPSKAHGPLYPLPVE
PEPKTLPFHLTNVFIEDLEYSKSYSRPVDFKCGLQTSSFGITQKPVSNANSQAPSLAKPE
ALGVSPASVSNKPTRRL

>gi568815589f:96046009_96247853|GENSCAN_predicted_CDS_4|1314_bp
natgacacagctaattctgaaacatatggaatcaaggcgtttgtgtgcgcattttccaag
gccctgcaagaggaatataaagcaaaagaagtcatcatccaggcgggctttctgagcctg
atcccggcctgggccttctacagcggtgccttccaaaggctgctcctgacacactatgtg
gcatacctgaagctcaacaccaagccttccatctgtgctacctcccaggaagccgaaggc
cgcagagtccctttcggatggcactgggagcaggaaaatgaggtgattatgggctgctgc
tccaagaagtattggcagctgttgctggggcggctccctggggtgtcatccctttcttgc
tcttgtggatgggaaccagagcaccccacttcaaagactctgctcatgcactctgccagt
catgtgggcattggcgatgaggcagactatgttgccgaagttaatgcaggatgtgctcca
gtggaatgtaaaggtatcctacgaacaagcaagagagagattagatcaaacaccaagatg
aaagtgttggagatgcagcccaataacaaaaagaaacccatggctggggtaattataagg
cttcagcgagctacgtcctggaggtgctccctgaatgttacctgtgaggaggagcagtgg
agcaggggaatgcagaggaagaagaggtatcgtggaagaagggattgtgggatgtacagc
caggagatcacagactctcaggatgcctggcagcaagtggggggccagaatttctggcgg
tggaacttactggacagcgtcagccctgagaaggttccctctgaagctccctgttaccca
agcacaatgggaattgtaatgagcatgcggacagtctgctcctcaaagagggacttgcct
gcagccatggctgtttcagaggccaaaggaaaagggaaaccgaaagaatacagcggccaa
gcaaactttcctgacagcagaaatcaatgcaaggtgggccataaagacccacaaggcctt
gttataaatgctgcaatgccgtccaaagctcacggccctctctatcctttaccagtagaa
ccagaacccaagacactgccttttcatttaaccaacgtatttattgaggacctggaatac
tccaagtcttattctaggccagtggatttcaaatgtggtctccagaccagcagcttcggc
atcacccagaaacctgtgagcaatgcaaactctcaggcccccagccttgctaagccagaa
gctctgggggtcagccctgcatctgtgtctaacaagcccaccaggcgactctga